OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June...
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Transcript of OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June...
![Page 1: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/1.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO tool
M. Fichaut, V. Tosello, M. Larour
![Page 2: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/2.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
2www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Overview• Objectives, background and technical characteristics
• Mikado main features
• Differences between MIKADO V0 and V1
• Manual input of metadata
• Use of the common SDN vocabularies
• Automatic XML generation
• Connection to the local database
• Query writing
• Mapping to the local database
• Practical work session
![Page 3: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/3.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
3www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Objective MIKADO is used to generate XML catalogue descriptions, it creates
XML ISO-19115 files using SDN common vocabularies for metadata exchange of CSR - Cruise Summary Reports EDMED - Marine Environmental Data sets CDI - Common Data Index EDMERP - Marine Environmental Research Projects [EDIOS – Permanent Ocean-observing System]
To use MIKADO you must be familiar with the XML documentation of SDN which can be downloaded from BSCW :
SDN Technical Task Team ISOApplication of ISO 19115 within SeaDataNet V1XML METADATA for CSR V1 ….
![Page 4: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/4.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
4www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Some background
• Mikado version 0
• created for the SEA-SEARCH project
• used for SeaDataNet V0
• Mikado version 1
• New version of Mikado to be compliant with the SeaDataNet V1 XML schemas, and the SeaDataNet common vocabularies
• Completely rewritten, more user friendly
![Page 5: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/5.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
5www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Technical characteristics
• Written in Java Language (Version >= 1.6)
• Available under multiple environments :
• Microsoft : Windows 2000, XP, VISTA
• APPLE
• Unix - Solaris
• Linux
• Use of the SeaDataNet common vocabularies web services
• to update lists of values of the SeaDataNet common vocabularies
• need network connections in order to have up to date lists of values.
• But Mikado works offline once the list are up-to-date
![Page 6: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/6.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
6www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO main features (1)
MIKADO can be used in 2 different ways
• One manual way, to input manually information for the catalogues and CDI in order to generate XML files.
• One automatic way, to generate XML descriptions automatically, from information catalogued in a relational database. Automatic way is needed for those who have many entries referenced in a relational database
Only one interface for all catalogues
• Same look
• Same principles
![Page 7: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/7.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
7www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO main features (2)
MIKADOJava code
Native DriversMYSQL
ORACLEPOSTGRESSQLServer
Bridge Driversusing Microsoft ODBC
(ACCESS, EXCEL, SQL SERVER)
DATABASE
JDBCJava DataBase Connectivity
EXCEL File
XML filesfor SeaDataNet
catalogues
CSREDMEDEDMERPCDI[EDIOS]
Manual
Automatic
Other DriversDownloaded from ad hoc Websites (Copied in the dist/lib MIKADO directory)
![Page 8: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/8.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
8www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Differences between V0 and V1 • No need to modify configuration files with JDBC connections and SQL
queries
• database connection and the user the queries are save as XML files
• EDMERP catalogue available in MIKADO
• Manual Input of data
• Input screens updated to be compliant with the new XML schemas
• List of values = common vocabularies
• Automatic generation of XML files : more interactive and user-friendly
• Help for JDBC connection – connection checking
• Help for the SQL query writing – query checking and query saving
• Incremental mapping with the local database
![Page 9: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/9.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
9www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO – Manual input
![Page 10: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/10.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
10www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO – Manual input
• Available for 4 catalogues : EDMED, CSR, CDI, EDMERP
• EDIOS will be also available in the near future
• Each input generates an XML file that can be sent to the central catalogues
• For EDMERP and CSR : EDMERP CMS and CSR online can also be used, but MIKADO is useful
• if you have problems with the NETWORK connection
• if you want to keep locally an XML description of your catalogues
• For EDMED and CDI, there is no online input tools.
![Page 11: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/11.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
11www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO and vocabulary lists
List code
List Name List code
List Name
C16 SeaDataNet Sea Areas L061 SeaDataNet Platform Classes
C77 ICES ROSCOP data types L081 SeaDataNet Data Access Restriction Policies
C174 SeaDataNet CSR ship metadata L101 SeaDataNet geographic co-ordinate reference frames
C320 ISO countries L111 Height and Depth Vertical Co-ordinate Reference Datum
C371 Ten-degree Marsden Squares L181 ROSCOP sample quantification units
C381 Ports Gazetteer L231 SeaDataNet metadata entities
L05 SeaDataNet device categories L241 SeaDataNet data transport formats
L021 SeaDataNet Geospatial Feature Types P021 BODC Parameter Discovery Vocabulary
L031 SeaDataNet Measurement Periodicity Classes P081 SeaDataNet Parameter Disciplines
EDMERP European marine projects EDMO European marine organisation
![Page 12: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/12.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
12www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO and vocabulary lists•Automatic check of the version of the vocabulary lists : once when MIKADO starts
• MIKADO downloads locally the latest version of each list
•Possible to enable-disable the automatic check and download of the lists and to work offline
![Page 13: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/13.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
13www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO manual – vocabulary lists (1)
Common vocabulary BODC,
list C320 (Country ISO codes)
![Page 14: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/14.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
14www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO manual – vocabulary lists (2)
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OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
15www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO – Automatic XML generation
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OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
16www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic - connexion
• Help for the connexion to the database
• Pre-filled information for some databases
• Check the connexion
![Page 17: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/17.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
17www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic – connexion OK
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OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
18www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO – automatic – connexion KO
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OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
19www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Expendable tree
• Main query
Return the ID
• Single queries
Return 1 row
• Multiple queries
Return 1 to n rows
MIKADO automatic – queries
![Page 20: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/20.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
20www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Write the queries
• SQL syntax (for Oracle, Excel, MySQL, …) and SQL variables must be adapted to your own data base
Check the Queries
• Green OK
• Red KO : read the error message
MIKADO automatic – queries
![Page 21: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/21.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
21www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic – single queries
All the XML variables are listed in the expendable tree
• In bold : mandatory fields
• 1 to n single subquery can be written
• In green : fields already fulfilled
• Add or to detele variables in a query
• Check the query
![Page 22: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/22.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
22www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic – multiple queries
All the XML variables are listed in the expendable tree
• Number of queries is pre-defined
• The list of variables for each of these multiple queries is also pre-defined
• In bold : mandatory field
• In green : fields already fulfilled
![Page 23: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/23.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
23www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic – multiple queries
• In a group of variables (same XML block, same pre-defined set of variable in a query), the non mandatory variables can be left to null
![Page 24: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/24.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
24www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic - Save the queries
When all the queries are written
• They can be saved in an XML file to be re-used later on
![Page 25: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/25.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
25www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic - generate the XML files
1. Select the catalogue you want to generate
2. Open the corresponding queries
3. Choose the output directory
4. Export the XML files
• Progress bar
• Cancel allowed
![Page 26: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/26.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
26www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
While generating the XML files for all the catalogues
• Each time that MIKADO does not recognized a value (entrykey or entryterm) which should come from the common vocabulary, it asks the user for mapping
• MIKADO manages a demand-driven continuous (incremental) extension of a local mapping : mapping of the local database to the common vocabulary
• Mapping tables can be modified
• Delete rows
• Modify the LOCAL value
MIKADO automatic - local mapping
![Page 27: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/27.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
27www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic - local mapping
Example
CSR generation
• Mapping of the platform type
![Page 28: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/28.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
28www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO automatic - local mapping
Modification of the local mapping
If wrong entries have been input, it is possible to:
• Delete one entry
• Delete all the entries
• Change the local code
![Page 29: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/29.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
29www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO – User manual
User manual is provided :
in : SDN_tools\Mikado_usermanual
File : SDN_MIKADO_UserManual_v1.pdf
• Detailed explanations for MIKADO use, lots of snapshots
![Page 30: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/30.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
30www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
MIKADO helpdesk
When using MIKADO
• Questions and errors must be reported to
• Subject of the mail should be :
• MIKADO question or
• MIKADO error
![Page 31: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/31.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
31www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Practical work – to-morrow
• Manual input of one EDMED form
• Manual input of one Cruise Summary Report
• Automatic generation of CDI files
• One dataset of 81 XBT SIPPICAN files
• EXCEL or MySQL
• Use the XML validator to see if your files are valid
• Copy MIKADO material on your own computer
• Copy the directory SDN_TOOLS.zip file and unzip it
![Page 32: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/32.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
32www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Practical work – requirements
Make sure that the java version is > = 1.61) To know if Java is available on your computer, in the right
version, follow these steps : - Open 'Start' menu, then 'Execute' - On the displayed window, enter: 'cmd', then click on 'OK' button - Enter 'java -version'
2) Check if command has been executed : - If not, download the last java version at http://java.com/en/download/index.jsp. - Else, check the version displayed.
The version should be greater than or equal to 1.6.
![Page 33: OBSERVATIONS & PRÉVISIONS CÔTIÈRES 3 rd SeaDataNet training course – Ostende – 16-19 June 2008 MIKADO tool M. Fichaut, V. Tosello, M.](https://reader035.fdocuments.in/reader035/viewer/2022062712/56649c785503460f9492e27f/html5/thumbnails/33.jpg)
OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
33www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
Practical work – requirements
For the trainees who want to test Mikado with MySQL • Those who have already MySQL on their labtops : make sure that
MySQL Query Browser is also available.
• If not, you must install it by double clicking on the following file from the common directory
SDN_tools\databases\mysql\install\Query_browser\
file : mysql-gui-tools-5.0-r12-win32.msi
• Those who do not have MySQL: let us know, we will install it on your notebook.
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OBSERVATIONS
& PRÉVISIONS CÔTIÈRES
34www.seadatanet.org
3rd SeaDataNet training course – Ostende – 16-19 June 2008
ANY QUESTIONS?