Neuronal excitability from a dynamical systems perspective Mike Famulare CSE/NEUBEH 528 Lecture...
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![Page 1: Neuronal excitability from a dynamical systems perspective Mike Famulare CSE/NEUBEH 528 Lecture April 14, 2009.](https://reader038.fdocuments.in/reader038/viewer/2022110322/56649d405503460f94a19a44/html5/thumbnails/1.jpg)
Neuronal excitability from a dynamical systems perspective
Mike FamulareCSE/NEUBEH 528 LectureApril 14, 2009
![Page 2: Neuronal excitability from a dynamical systems perspective Mike Famulare CSE/NEUBEH 528 Lecture April 14, 2009.](https://reader038.fdocuments.in/reader038/viewer/2022110322/56649d405503460f94a19a44/html5/thumbnails/2.jpg)
Mike Famulare, CSE/NEUBEH 528 2
Outline
• Analysis of biophysical models– Hodgkin's classification of neurons by
response to steady input currents
• Introduction to dynamical systems
• Phase portraits and some bifurcation theory– quadratic-integrate-and-fire model
– Fitzhugh-Nagmuo model
• General simple neuron models
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Mike Famulare, CSE/NEUBEH 528 3
Biophysical Modeling
• Neurons can be modelled with a set of nonlinear differential equations (Hodgkin-Huxley)
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Mike Famulare, CSE/NEUBEH 528 4
Hodgkin-Huxley Model
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Mike Famulare, CSE/NEUBEH 528 5
What causes the spike in the HH model?
• In response to a step current at t=5 ms:– fast inward current
followed by slower outward current
– sodium channel (m) activates
– more slowly, potassium channel (n) activates and sodium (h) deinactivates.
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Mike Famulare, CSE/NEUBEH 528 6
Hodgkin-Huxley f-I curve
• Rate coding: firing rate response (f) to input current (I), steady state
• There is a minimum firing rate (58 Hz)• Can you infer the f-I curve from the
Hodgkin-Huxley equations?
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Mike Famulare, CSE/NEUBEH 528 7
Connor-Stevens Model
• Model of a neuron in anisodoris (AKA the sea lemon nudibranch)
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Mike Famulare, CSE/NEUBEH 528 8
What causes a Connor-Stevens spike?
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Mike Famulare, CSE/NEUBEH 528 9
Connor-Stevens f-I curve
• Does not have a minimum firing frequency.
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Mike Famulare, CSE/NEUBEH 528 10
Classifying Neurons by f-I type
cortical pyramidal brainstem mesV
Hodgkin's Classification of Neuronal Excitability
Class 1: shows a continuous f-I curve (like Connor-Stevens)
Class 2: shows a discontinuous f-I curve (like Hodgkin-Huxley)
Class 3: shows no persistent firing (as can be found in auditory brainstem)
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Mike Famulare, CSE/NEUBEH 528 11
Model-by-model is not the way to go!
• We want to understand why neurons are excitable.
• We want to understand what makes different neurons behave in different ways.
• Going model-by-model is difficult and not at all general:– there are hundreds of channel types in nature– any cell expresses a few or ten or so of them
• What do we do with cells whose response is measurable but for which we don't have a model?
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Mike Famulare, CSE/NEUBEH 528 12
Dynamical systems and simple models
• The models we've talked about are dynamical systems.
• What's a dynamical system?
• We can analyze dynamical systems to understand:– equilibria (resting potentials)– “unstable manifolds” (spike thresholds)– bifurcations (f-I class, root of subthreshold
behavior)
v= f v , I
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Mike Famulare, CSE/NEUBEH 528 13
• System: dynamical variables , control variable I.
• Fixed points :• Linear response near a fixed point:
• Stability analysis: what are the eigenvalues of
• Bifurcation: change in the qualitative behavior
of the system as the “control variable”, I, is changed.
Overview of stability and bifurcation analysis
v=f v , I
0=f vo , I
v
vo
v=[∂ f v , I ∂v ]
vo
⋅v−vo
det[[∂ f v , I ∂v ]
vo
−1]=0,stable if ℜ[]0
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Mike Famulare, CSE/NEUBEH 528 14
A note about the leaky-integrate-and-fire
• Leaky-integrate-and-fire (LIF) model:
vo = resting potential, vr = reset voltage, vth = threshold voltage
• This model is not a spiking model in the sense that it doesn't have any dynamics for the spike itself.
• Piecewise “spike” is not dynamically similar to any real neuron
• Useful, but not for what we want to do today.
m v=−v−voIif v≥vth , v vr
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Mike Famulare, CSE/NEUBEH 528 15
Quadratic-Integrate-and-Fire Model (QIF)
• Simplest model with dynamical spikes:m v=−v v2 Iif v≥v s , v v r
v s=spike max , v r=spike reset ,m= time constant ,0
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Mike Famulare, CSE/NEUBEH 528 16
QIF fixed points
• Fixed points:
or
• Do the fixed point exist for all I?
– for , the fixed points no longer exist
(we'll come back to what this means soon!)
0=−v v2I
v+-=1
21±1−4 I
I 14
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Mike Famulare, CSE/NEUBEH 528 17
Phase plane analysis of the QIF: fixed points
• phase portrait for various external currents
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Mike Famulare, CSE/NEUBEH 528 18
Phase plane analysis of the QIF: stability
• Phase portrait of QIF: τm=1, α=1, and Iext=0
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Mike Famulare, CSE/NEUBEH 528 19
Stability Analysis of QIF
• linear response and stability at each fixed point
• for v-
– stable! v- is the resting potential
• for v+
– unstable! v+ is the threshold voltage
m v=[ ddv −v v2]v+-
v−v+-
m v=−21−4 I v−v -
m v=21−4 I v−v +
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Mike Famulare, CSE/NEUBEH 528 20
Saddle-node bifurcation in the QIF
• Loss of stability via a saddle-node bifurcation:– two fixed points “annihilate” each other
• also, we see that the QIF is an integrator!
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Mike Famulare, CSE/NEUBEH 528 21
Two types of saddle-node bifurcation
• “Saddle-node on invariant circle” (SNIC)– reset below “ghost”
of fixed point– arbitrarily low firing
rate—Type I
• Saddle-node (SN)– reset above “ghost”
fp– slow first spike– finite minimum firing
rate—Type II
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Mike Famulare, CSE/NEUBEH 528 22
Summary of saddle-node bifurcations
• Saddle-node bifurcations occur when two fixed points disappear in response to a changing input
• Systems showing an SN bifurcation will be act as integrators
• For neurons, depending on details of the nonlinear spike return mechanism, SN bifurcators can be Type I (continuous f-I curve) or Type II (discontinuous f-I curve)
• The Connor-Stevens model shows a SNIC bifurcation
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Mike Famulare, CSE/NEUBEH 528 23
What about resonating neurons?
• The saddle-node bifurcation type is only one of the very simple (“codimension 1”) bifurcations
• Hodgkin-Huxley does not show a saddle node bifurcation– one of the many ways to see this is that the
HH model cannot show an arbitrarily-long delayed first spike to step current
• With one dynamical variable, the saddle-node is the only possible continuous bifurcation, so we need two variables now!
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Mike Famulare, CSE/NEUBEH 528 24
Fitzhugh-Nagumo Model
• The Fitzhugh-Nagumo (FN) model is Hodgkin-Huxley like.
• Equations:
• Has two dynamical variables (is a two-dimensional dynamical system)– a voltage variable, v
– a recovery variable, w
v=v−v3/3−wIw=a v−bw
a=0.08,b=0.8
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Mike Famulare, CSE/NEUBEH 528 25
Fitzhugh-Nagumo phase portrait
• For standard parameters, the FN has one fixed point that exists for all I.
• dx/dt = 0 lines are known as “nullclines”
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Mike Famulare, CSE/NEUBEH 528 26
Stability of the fixed point in the FN model
• finding the critical current– bifurcation happens when intersection of
nullclines is at the local minimum:
• fixed point nearby critical point
vcrit=−1,wcrit=−1b
I crit=23−1b
I= I− I crit
vo=−1b I O I 2 ,wo=vob
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Mike Famulare, CSE/NEUBEH 528 27
Linear Response of FN near critical point
• Linear response of 2D model:
• eigenvalues are a complex-conjugate pair
• stable when
[∂ f v , I ∂v ]
vo
2 eigenvalues
+-=b I 1± ab
a2b2−4a ±a2b2
4−a
ℜ[+-]=b I
ℜ[+-]0
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Mike Famulare, CSE/NEUBEH 528 28
FN model shows a Hopf bifurcation
• Hopf bifurcation: stable, oscillatory fixed point becomes an unstable, oscillatory fixed point– there is a non-zero minimum firing rate
controlled by the linear response frequency at the critical input current
• Type II excitability
min~ ℑ[+-]
f min~1
2 a− a2b2
4 I
2a b2
4a−a2b2
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Mike Famulare, CSE/NEUBEH 528 29
Visualizing Hopf Dynamics
• phase portrait of a Hopf-bifurcating model (not the FN) for currents below the critical current
• looping around = subthreshold oscillation
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Mike Famulare, CSE/NEUBEH 528 30
Two types of Hopf bifurcation
• There are two types of Hopf bifurcation:– supercritical (like Fitzhugh-Nagumo and HH)
– subcritical
– see “Dynamical Systems in Neuroscience” by Izhikevich or Scholarpedia for details
• For real single neurons, the difference has never been found to be experimentally important (Izhikevich 2007)
• Both are Type II
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Mike Famulare, CSE/NEUBEH 528 31
Bifurcation Theory Review
• Bifurcation: a change in the qualitative behavior in response to a changing control parameter
• With only one control parameter (e.g. current), there are only two types of equilibrium bifurcations (“codimension one”):
• There is a lot more to this bifurcation business!– what if you've got more inputs (drugs,
hormones)?– how do you fit a simple model (“normal form”,
”canonical model”) to a more complex model or real data?
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Mike Famulare, CSE/NEUBEH 528 32
Simple Models can cover a lot of ground
• Saddle-node and Hopf bifurcations are very common and can describe the single-spike properties of the spike-generating mechanisms of most neurons
• One model to do a lot (Izhikevich 2003)
v= v2 vIu=a bv−u
when v≥v spike , v c ,uud
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Mike Famulare, CSE/NEUBEH 528 33
Izhikevich's simple model (adaptive QIF)
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Mike Famulare, CSE/NEUBEH 528 34
References
• Dayan and Abbott
• “Dynamical Systems in Neuroscience” by E.M. Izhikevich
• “Spiking Neuron Models” by Gerstner and Kistler
• “Nonlinear Dynamics and Chaos” by Strogatz
• Scholarpedia