Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson,...

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Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton College) BCCE 22 Penn State University Wednesday, Aug. 1, 2012

Transcript of Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson,...

Page 1: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Molecular visualization for the masses: Virtual model kits to

virtual playgroundsRobert M. Hanson, Erik Wyatt (St. Olaf College)

Hai Nguyen (Carleton College)BCCE 22

Penn State UniversityWednesday, Aug. 1, 2012

Page 2: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Tom Newton,U. So. Maine.

Thanks for the greatcollaboration!

Otis Rothenberger,Ill. State

MarkusSitzmann,NCI-NIH

Carl BattCornell Univ.

Page 3: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Hens BorkentRadboud Univ.,Netherlands

Thanks for the greatcollaboration!

Paul Pillot,Académie de Nice

Amanda Leone,St. Olaf

RobertLancashire,U. West Indies

Page 4: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Hai NguyenCarleton ’13

Thanks for the greatcollaboration!

Erik WyattSt. Olaf ‘14

Craig MartinU. Mass. Amherst

Adam WilliamsonU. Mass.

Page 5: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Web-base molecular visualization

molecular orbital viewervirtual model kitmolecular playgroundnew ideas for teaching spectroscopy

Page 6: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Web-base molecular visualization

molecular orbitals

Page 7: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 8: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 9: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 10: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 11: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

CheMagic O=Chem VMK

http://chemagic.com/vmk

Page 12: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

CheMagic O=Chem VMKMolecular Editor

http://chemagic.com/vmk

Page 13: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

CheMagic O=Chem VMKStructure Drawing

JME applet by Peter Ertl, Novartis, Basel, Switzerland

http://chemagic.com/vmk

Page 14: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Infinite Model Collection

http://chemapps.stolaf.edu/jmol/modelkit

Page 16: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

http://chemapps.stolaf.edu/jmol/modelkit

Page 17: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

http://chemapps.stolaf.edu/jmol/modelkit

Page 18: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

http://chemapps.stolaf.edu/jmol/modelkit

Page 19: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

http://chemapps.stolaf.edu/jmol/modelkit

Page 20: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

http://www.molecularplayground.org/

Page 21: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Google: bobjmol molecular playground

Page 22: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Google: bobjmol molecular playground

Page 23: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

Structure/Spectrum Correlation

http://chemapps.stolaf.edu/jmol/jspecview/jsvtest.htm

Page 24: Molecular visualization for the masses: Virtual model kits to virtual playgrounds Robert M. Hanson, Erik Wyatt (St. Olaf College) Hai Nguyen (Carleton.

http://chemapps.stolaf.edu/nmr/viewspec2

Spectral Analysis Using JSpecView