Himalayan Plateau. Himalayan plateau topography Rivers off the Tibetan Plateau.
Molecular Systematics of Bamboos in the Eastern Himalayan Region of Northeast India … ·...
Transcript of Molecular Systematics of Bamboos in the Eastern Himalayan Region of Northeast India … ·...
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Molecular Systematics of Bamboos in the
Eastern Himalayan Region of Northeast India
L.B. Singha, A.R. Barbhuiya, B.I. Choudhury,
M.L. Khan and S. Dayanandan
CONCORDIA UNIVERSITY
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INTRODUCTION� BAMBOO-Perennial woody grass
� Family – Poaceae; Sub-family Bambusoideae
� Culm - branches, leaves, distinct nodes and internvodes
� Rhizome - below ground with adventitious roots
� Fast growing species - growth up to 1.2 m/day
LEAF
CULM
BRANCH
NODE INTERNODE
RHIZOME
ROOTA BAMBOO CLUMP
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IMPORTANCE OF BAMBOO
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WORLD-WIDE DISTRIBUTION & DIVERSITY OF BAMBOOS
�Sea level to 4500 m; All continents except Europe & Antarctica
�Genera: 111, Species:1575 (UNEP-WCMC 2003)
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Classical Taxonomy of Bamboos
o Munro (1868): 3 Divisions (21 genera)
o Kurz (1876): Culm sheath
o Gamble (1881): 4 subtribes (14 genera)
o Bentham (1883): 4 subtribes (18 genera)o Bentham (1883): 4 subtribes (18 genera)
o Stapf (1897): 5 subtribes (24 genera)
o Hooker (1897): 4 subtribes (15 genera)
o Camus (1913): 4 subtribes (21 genera)
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Recent bamboo classification
Subtribe (10) Clayton and
Renvoize (1986)
Soderstrom and
Ellis (1987)
Dransfield and
Widjaja (1995)
Stapleton
(1994, 1997)
Li (1999)
Arthrostylidiinae 11 genera,
NWT
13 genera,
NWT
13 genera,
NW
13 genera,
NW
Arundinariinae 20 genera,
PT
12 genera,
OW
14 genera,
OW
19 genera,
OW
14 genera,
OW
Bambusinae 25 genera,
PT
6 genera,
OWT
13 genera,
OWT
11 genera,
OW
9 genera,
OWT
Chusqueinae 1 genus,
NWT
2 genera,
NWT
2 genera,
NW
2 genera,
NWT
Guaduinae 5 genera,
NWT
5 genera,
NWT
5 genera,
NWT
5 genera,
NWTNWT NWT NWT NWT
Melocanninae 4 genera,
OWT
7 genera,
OWT
8 genera,
OW
10 genera,
OW
9 genera,
OWT
Nastinae 4 genera,
OWT+NWT
6 genera,
OW
6 genera,
OWT
6 genera,
OW+NWT
Neurolepidinae 1 genus,
NWH
Racemobambosinae 3 genera,
HIM
3 genera 1 genus,
OWT
Shibataeinae 7 genera,
HIM
5 genera,
OW
5 genera 7 genera,
OWT
Unclear placement 5 genera 3 genera 1 genus
Total 49 genera 59 genera 69 genera 77 genera 67 genera
NW-New World; NWT-New World Tropics; NWH- New World High elevation; OW-Old World; OWT-Old World Tropics; PT- Pan Tropics; HIM-Himalayas
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DISTRIBUTION & DIVERSITY OF BAMBOOSIN INDIA
Phytogeographical
zones
Genera Species
Western Himalaya,
Eastern Himalaya 16 90
Peninsular India
including Western
Ghats6 35
Andaman &
Nicobar islands4 7
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• Endemic bamboo species: 21
• Rare & endangered: 23
S. arunachalensis A.malingA. griffithiana
• Rare & endangered: 23
A. densifolia A. walkeriana O. beddomei
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PROBLEMS
� Incongruencies between existing Phylogeny and
Classification of many bamboo species
�Limited availability of reproductive structures�Limited availability of reproductive structures
(flowering time 7-120 years)
�Morphological plasticity
�Morphologically intermediate traits
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OBJECTIVES
�Reconstruct the Phylogeny of bamboos in the
Eastern Himalayas using molecular markers
�Assess the congruency between molecular
phylogeny and classical systematics of Bamboos phylogeny and classical systematics of Bamboos
in the Eastern Himalayas
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MATERIALS AND METHODS
�25 bamboo species belonging to 11 genera
�PCR amplification and sequencing of psbA-trnH
inter genic region of the cpDNA and ITS2 of
nrDNA
�Sequence Alignment: Geneious, ClustalW
�Data analyses: MacClade/ PAUP
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RESULTS
Parameters psbA-trnH (cpDNA) ITS2 (nrDNA)
Total characters
(nucleotides)
590 455
Parsimony informative
characters(nucleotides)
38 48
Equally parsimonious trees 137 211
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BambusinaeBambusinae
Majority rule consensus trees based on cpDNA and nrDNA sequences
psbA-trnH ITS2
Outgroup
Shibataeinae+
Arundinariinae
Melocanninae
Racemobabosinae
Outgroup
Shibataeinae +
Arundinariinae
Melocanninae
Racemobabosinae
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Bambusinae Bambusinae
Strict consensus trees based on cpDNA and nrDNA sequences
psbA-trnH ITS2
Outgroup
Shibataeinae +
Arundinariinae
Melocanninae
Racemobabosinae
Outgroup
Shibataeinae+
Arundinariinae
Melocanninae
Racemobabosinae
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DISCUSSION
�Both cpDNA & nrDNA provided identical phylogeny
of bamboos in Eastern Himalayan region
� Placement of the Tropical bamboo genera under 3
Subtribes is consistent with recent bamboo Subtribes is consistent with recent bamboo
taxonomy
� Subtribe Arundinariinae and Shibataeinae is closely
related and incongruent (Triplett & Clark, 2010)
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DISCUSSION
�Bambusa, Dendrocalamus and Thyrsostachys are
polyphyletic suggesting parallel evolution (Xia, 1994;
Mukherjee et al. 2010)
� Placement of Pseudosasa and Cephalostachyum
under Bambusinae is inconsistent with existing under Bambusinae is inconsistent with existing
classifications and needs detail study considering
large populations
� Close phylogenetic relationship of B. arundinacea -
a giant bamboo and B. variegata - a shrubby
bamboo needs in depth molecular study
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CONCLUSION
�Phylogenetic relationships among the major bamboo
genera of Eastern Himalayan region of India
�Species delimitation up to subtribes
�Further studies:
� Include remaining bamboo species & considering � Include remaining bamboo species & considering
more nuclear & chloroplast marker
� Complete Phylogeny reconstruction for the bamboos
in the Eastern Himalayas may contribute ideas of
bamboo evolution on global perspective
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ACKNOWLEDGEMENTS
• Department of Biotechnology, Ministry of Science
& Technology, Government of INDIA is duly
acknowledged for financial assistance
• CONCORDIA UNIVERSITY is duly acknowledged • CONCORDIA UNIVERSITY is duly acknowledged
for providing laboratory facilities to conduct the
study
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THANK YOU