Molecular Analysis of Heavy Metal Uptake and Accumulation ... · 0.816 1.079 12 0.00118-----mM Zn /...
Transcript of Molecular Analysis of Heavy Metal Uptake and Accumulation ... · 0.816 1.079 12 0.00118-----mM Zn /...
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Molecular Analysis of Heavy Metal Uptake and Accumulation Using a Metal
Hyperaccumulating Plant Species
Leon V. KochianU.S. Plant, Soil and Nutrition Laboratory
USDA-ARSCornell University
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Thlaspi CaerulescensA Zn/Cd Hyperaccumulator
This species in the Brassicaceae has been the focus of botanicalresearch for over a century because of its ability to colonize
metalliferous soils.
Growth Medium [Zn] of Medium Shoot [Zn] Phytotoxicity(ppm) (ppm) Symptoms
Soil 1800 52000 Severe
Soil 178 18000 None
Hydroponics 206 26000 None
Hydroponics 6.5 6200 None
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T. caerulescens is a small, slow growing plant – Thus it’s utility is as an interesting model system for understanding how plants accumulate and tolerate high levels of metals
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SUMMARYPhysiology of Zinc Hyperaccumulation
A number of Zn transport sites are altered in T. caerulescens
• Stimulated Zn2+ influx across the root-cell PM
• Reduced Zn sequestration in the root-cell vacuole
• Stimulated Zn transport into the xylem (?)
• Stimulated Zn2+ influx into leaf mesophyll cells
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Plant Zn2+ Transport Gene was Cloned by Complementation
wt zhy3
pZNT1
High Zn Low Zn
T. caerulescenscDNA library
zhy3, yeast zinc transporter
gene mutant
Screen on low zinc medium
transforminto
ZNT1 containingcolony
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ZNT1 is a Member of the ZIP Family of Micronutrient Transporters
M - - - - - - - - - - - - - - - - A S S P T K I L C D A G E S D L C R D D A A A F L L K F V A I A S1M - - - - - - - - - - - - - - - - A S S T T K I L C D A G E S D L C R D D S A A F L L K F V A I A S1M K T I F L V L I F V S F A I S P A T S T A P E E C G S E S A N P C V N K A K A L P L K V I A I F V1
I L L A G A A G V A I P L I G K N R R F L Q T E G N L F V A A K A F A A G V I L A T G F V H M L A G35I L L A G A A G V A I P L I G R N R R F L Q T E G N L F V A A K A F A A G V I L A T G F V H M L A G35I L I A S M I G V G A P L F S R N V S F L Q P D G N I F T I I K C F A S G I I L G T G F M H V L P D51
G T E A L T N P C L P D Y P W S K F P F P G F F A M V A A L I T L L V D F M G T Q Y Y E S K Q Q R N85G T E A L S N P C L P D F P W S K F P F P G F F A M V A A L A T L L V D F M G T Q Y Y E R K Q E R N85S F E M L S S I C L E E N P W H K F P F S G F L A M L S G L I T L A I D S M A T S L Y T S K N A - -101
E V A G G G E A A V V E E T S S V L P V V V E R G N D S K A F G E E D G G G M H I V G I R A H A A H135Q A A T - - E A A A G S E E I A V V P V V G E R V T D N K V F G E E D G G G I H I V G I R A H A A H135- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - V G I M P H G - -149
H N H S H S N A H G T F D G H A H G Q S H G H V H V H G S H D V E N G A - - R H V V V S Q I L E L G185H R H S H S N S H G T C D G H A H G H S H G H M H - - G N S D V E N G A - - R H V V V S Q I L E L G183- - - - - - - - - - - - H G H G H G P A N D V T L P I K E D D S S N A Q L L R Y R V I A M V L E L G156
I V S H S I I I G L S L G V S Q S P C T I R P L I A A L S F H Q F F E G F A L G G C I S Q A Q F K N233I V S H S I I I G L S L G V S Q S P C T I R P L I A A L S F H Q F F E G F A L G G C I S Q A Q F R N229I I V H S V V I G L S L G A T S D T C T I K G L I A A L C F H Q M F E G M G L G G C I L Q A E Y T N194
K S A I I M A C F F A L T A P I G I G I G T A V A S S F N S H S P G A L V T E G I L D S L S A G I L283K S A T I M A C F F A L T T P L G I G I G T A V A S S F N S H S P G A L V T E G I L D S L S A G I L279M K K F V M A F F F A V T T P F G I A L G I A L S T V Y Q D N S P K A L I T V G L L N A C S A G L L244
T Y M A L V D L I A A D F L S K R M S C N V R L Q V V S Y V M L F L G A G L M S A L A I W A . 333V Y M A L V D L I A A D F L S K R M S C N L R L Q V V S Y V M L F L G A G L M S A L A I W A . 329I Y M A L V D L L A A E F M G P K L Q G S I K M Q F K C L I A A L L G C G G M S I I A K W A . 294
Decoration 'Decoration #2': Shade (with solid black) residues that match the Consensus exactly.�
ZNT1AtZIP4AtIRT1
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Strategies for Characterizing Members of Ion Transporter Gene Families
Tissue and cell specific localization of gene expression (Northerns, in situ mRNA localization, promoter-reporter gene constructs)Membrane localization of transport protein (via YFP-protein fusions)
Investigate transport properties using heterologous systems (yeast, oocytes, mammalian cell lines) and via knockout mutants (currently developing stable transformation system)
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Full Length88ZIP5ZNT5
Full Length88IRT3ZNT4
Missing 200 bp at 5’ end
88ZIP3ZNT3
Missing 28 bp at 5’ end
88ZIP2ZNT2
Full Length88ZIP4ZNT1
Length of Thlaspi clone
% IdentityArabidopsishomolog
Thlaspi caerulescens
ZIP Transporters in Thlaspi caerulescens
We are currently screening for ZIP1, 7 and 9 homologs in Thlaspi
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A Number of Other Micronutrient Transporter Gene Families Have Recently
Been Identified in Plants
• Nramp family of broad specificity micronutrient transporters
• CAX family of vacuolar membrane divalent cation/H+ transporters
• P-type heavy metal ATPases
• ZAT family of tonoplast and PM micronutrient/heavy metal transporters (members of the CDF superfamily)
• Subset of ABC transporter super family
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Characterization of ZNT1
Is It a “Super” Transporter?
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Zn in
flux
(pm
oles
min
-1 1
0-6 c
ells
)
0
2
4
6 pZNT1pFL61saturable ZNT1 kinetics
Cd
Zn or Cd concentration in solution (µM)0 20 40 60 80
Cd
influ
x(p
mol
es m
in-1
10-6
cel
ls)
0
3
6
9
ZNT1-Mediated Zn and Cd Influx in Yeast
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Mediation of Zn uptake by RIT1 and ZNT1
[Zn], µM0 20 40 60 80
Zn
influ
x, p
mol
es/1
06ce
lls/m
in
0
1
2
3
4
5
ZNT1-dependent uptakeRIT1-dependent uptake
RIT1 4.0 4.0ZNT1 7.5 2.2
KM VMAX
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ZNT1
ZNT1-arvense
Tc Ta
+ - + - + - + -Shoot Root
Zn:
Northern Analysis of ZNT1 Expression
Shoot Root
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Membrane Localization of ZNT1 Using ZNT1-GFP Construct
35S GFP pAVA120
c35S GFP pZNT1-GFPZNT1
Transient transformation by particle bombardment into onion, Thlaspi and Arabidopsis and via PEG transformation of protoplasts
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ZNT1-GFP Expression in Onion Cells
pZNT1-GFPpAVA120
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REGULATION OF HEAVY METAL GENE EXPRESSION: DOES HYPEREXPRESSION
DRIVE HYPERACCUMULATION?
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ZNT1
ZNT1-arvense
Tc Ta
+ - + - + - + -Shoot Root
Zn:
Northern Analysis of ZNT1 Expression
Shoot Root
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Increasing Plant Zn Status Decreases ZNT1 Expression
0 0 1 1 10 50 µM
A C A C A C
ZNT1 caer. probe
ZNT1 arvense probe
[Zn] in growth solution
Km
Vmax
2 4 2 6 2 5
80 240 40 270 40 80
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Altered Regulation of ZIP Transportersin T. caerulescens
• In “normal” plants there is a low level of ZIP expressionthat is upregulated by Zn deficiency.
• In T. caerulescens, ZNT1 expression is very high underZn deficient and sufficient conditions.
• Only when T. caerulescens is grown on very high levels ofZn is ZNT1 expression reduced.
• Regulation of Zn transporter expression is altered in T. caerulescens, contributing to hyperaccumulation.
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Zn Homeostasis in Yeast
ZREZrt1Zrt2etc
+Zn+Zn
-Zn
-Zn
Zrt1Zrt2
Zn
[ Zn ]Zrt1/ Zrt2 degradation
+ Zn
Zrt3
Zrc1Cot1
/
VACUOLE
NUCLEUS
Low Zn
High Zn
From MacDiarmid et al (2000) EMBO 19:2845
Zap1Zap1
Zap1
MetalloproteinsOther Organelles
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Zrt3Zrt2
Zrt1
αZip13
Zip2Zip9Irt3
Znt1Zip4
β
Zip6
Zip1Zip14
Zip3γ
Zip5
Znt5
Znt4
δ
Zip7
Zip10Zip12Rit1LeIrt1
LeIrt2
Zip8
Irt1
Irt2
ZIP FamilyPhylogenetic Tree δ
γ
β
α
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5’-ATG(A/T)CGA(A/C)A(C/T)-3’
ZIP promoters contain ppZRE(s)
α
β
γ
δ
ZIP4*, ZIP9, IRT3
ZIP1, ZIP3*, ZIP5
IRT1, IRT2, ZIP12
ZIP2, ZIP13
ZIP6, ZIP14
ZIP7, ZIP8
ZIPsubfamily
One or moreppZREs
NoppZREs
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Zrt3Zrt2
Zrt1
αZip13
Zip2Zip9Irt3
Znt1Zip4
β
Zip6
Zip1Zip14
Zip3γ
Zip5
Znt5
Znt4
δ
Zip7
Zip10Zip12Rit1LeIrt1
LeIrt2
Zip8
Irt1
Irt2
ZIP familyPhylogenetic
Tree
δ
γ
β
α
degenerate ppZRE
palindromic ppZRE
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Is Expression of Other Metal Transport Genes Altered in T. caerulescens?
Fourteen ZIP and three IRT homologues have been identified in ArabidopsisWe have cloned 5 ZNT homologs in Thlaspi with more on the way
What are their roles in hyperaccumulation and micronutrient homeostasis?
Other micronutrient/heavy metal transporter families:CAX family of tonoplast divalent cation/H+ antiporters
ZAT family of tonoplast and PM micronutrient/heavy metal transporters (members of the CDF superfamily)
Nramp family of broad specificity micronutrient/heavy metal transporters
Do any of these play a role in hyperaccumulation or tolerance?
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ZAT1tc
MT2a
µM Zn
AtNramp2A C A C A C
ZNT4µM Zn0 1 10/50
Root
A C A C A C
Znt2
Znt3
Znt5
0 1 10/50
Root
Heavy Metal-Related Gene Expression in Roots of T. caerulescens vs. T.arvense
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Zn Homeostasis in Yeast
ZREZrt1Zrt2etc
+Zn+Zn
-Zn
-Zn
Zrt1Zrt2
Zn
[ Zn ]Zrt1/ Zrt2 degradation
+ Zn
Zrt3
Zrc1Cot1
/
VACUOLE
NUCLEUS
Low Zn
High Zn
From MacDiarmid et al (2000) EMBO 19:2845
Zap1Zap1
Zap1
MetalloproteinsOther Organelles
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Zhy6 Wt
pE2F1 pE2F2
High Zinc Low Zinc
E2F1 and E2F2 Confer Growth on Low Zinc for the ZAP Deletion Mutant, ZHY6
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Nuclear Localization Signal
DNA binding domain
Leucine Zipper
Marked Box
Rb binding domain
Significant Sequence Homology among Plant E2F-like proteins
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Wt Zhy6 E2F1 E2F2 Wt Zhy6 E2F1 E2F2 Wt E2F1 E2F2
E2F Induced Zrt1 Expression in Yeast
High Zinc Sufficient Zinc Low Zinc
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0 1 10/50
Root Shoot
Ta Tc Ta Tc Ta Tc Ta Tc Ta Tc Ta Tc
0 1 10/50 µM Zn
E2F1
E2F2
E2F1/E2F2 are members of a family of transcription factors involved in regulation of the cell cycle via a complex involvingcyclins and CDKs. How might such a protein be involved in regulation of plant mineral nutrition?
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PHO Regulon in Yeast:Molecular Regulation of P Nutrition/Acquisition
Ogawa, DeRisi and Brown. 2000. Molecular Biology of the Cell 11:4309.
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PHO Regulon in Yeast:Pho regulatory system showing the 5 main regulator proteins (Pho 2, 4, 80, 81, and 85)
Ogawa, DeRisi and Brown. 2000. Molecular Biology of the Cell 11:4309.
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Elucidating mechanisms of Zn-dependent gene regulation in Thlaspi caerulescens
Promoter Analysis
• We have cloned Thlaspi ZNT1 promoter via genome walking and Arabidopsis ZIP4 promoter via PCR(ZNT1 promoter contains the ppZRE found in ZIP4)
• Expression analysis using promoter-reporter gene constructs and protoplast transient expression assay –reciprocal assays
• Promoter deletion analysis to identify functional ZREs
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AACTCCCCATCTTA-CAAAGTT-ACCGTCCTTTTAGCTTAAGCTGCCTACTTCTCATCCTT-TTTCAGCTTAAGCTACTCC---------------TAATC--ATCCTT--TTAAACCTA 1 pAtZp4promoterGACTGAAGATGGCAGCAATGTGGAGAGGGAAGAGAGGAAGAGCTTTCTGGAAATATTAATTATGTTGGTTGGGAATATACCAAGGGAGAGGTGAAACAATCCAATCCTTAACCCAAGCTA 1 pZnprom_typeI_F
CGGCTT--TAAGTTTTTTTTTAACTC---ATATAATCTTCTGCAGTAGACTTGACTTAATCGGATTTTCTGTTTCATGAACTTGTTGGTAGTGTG-GAACAAATGGGAAAATGAATATTT 99 pAtZp4promoterCCTCCTAATAATCCTTTTTTTAGCTTCCGGTTTAGTGTGTTGAAGTTGTTAAACTCCTTTTATAACCGTTGTTATGTAATCGTTTTTGTATTTCATGAACAAATGGATGAA-GAATATTT 121 pZnprom_typeI_F
T---TGGAACAAATTGATTTTCTGTTTCATAT-TAAGTTAAATCATTCTGTTTCCACTGAAATAAATTGTTTTCCAAAAATCACTCCGTTTATTATGTCTTTGTTTTTAAGAAATAAAAG 213 pAtZp4promoterTAGTTGGAACCA-TCATTACAATATTTTACTTGTCAACTAAAA-ATGTAAATGCAATTAGCACTCTCCATCTACAATCTGTCAACCT-TGTGCAATCAATAAAAATGTAGATAATAATAC 240 pZnprom_typeI_F
TGAGAAAACAGAATAACGCGAAAATGTCGACATATTTGGCTAAGTATAGACAAGATTGGGAAGCTCTGTTTAGTTAT--GCGT---CAGTC--TCTCATCAGTGTTCAACTGCCACGGAG 329 pAtZp4promoterTAGCATCTTTTAACTTTAATATTATTTTCCAAATTTTGTGTGGAAAAAAATGAAAAGAGAGAATAACGTGAAAATGTCGACATAATTAGCCAAATATACAAGTGTACAAGTGCCACGGAG 357 pZnprom_typeI_F
CGAACCGATTCCTAATTGCAACGTCCCGAGTCCATAGAATGTCGACACTCTTTCACTCTTTCTCCAAGTTGCCTCCTTTGAGTCCTTTCTCATATTTTATAGACTCACTTTCTGTTTCTT 442 pAtZp4promoterCGAGCGAGCGGTT--CCGCAAC-TCCAACTTGCTGAGAATGTCGACACTCTTTCGCTCGTC-----GATT-CCTCCTTT---TTTCTAATC-TGCTTT-TCGGTTAGCTTTCTGCTCCTT 477 pZnprom_typeI_F
GATCCCGAGGAAGAAGAAGAATAAACTCTT-GTTCCCATGATCTTCGTCGATGTTAGT---------ACCTTGAGATTCGATT--CGTCTCTCCGATTCTTTATAATCG-GAATTTATTG 562 pAtZp4promoterGATCCCGAGAAA-AAGAAGAAGACACTCTTTGTTCCCATGATCATCGCCGATGTTAGTCATATATCCACCTTGGGATTCGTTTTCCGTCTCTCCACTTTTCTATATTCTTGAATTTACTG 583 pZnprom_typeI_F
GTTT--------GTGGAATCTGATTTT-GGGTTCTCTTCTATTGCTCTTATAGGTTCTTTGGAAATTGTTTCCTCTATACTCGTTTGGATCAGGAAGAGACTCTCTCTCAGGTATTTCAT 669 pAtZp4promoterTTTTCTCTTTTTGTGGAATCTGATTTTCGAATTCTCTTCTCTTGGTCTTA--GCTTCTTTGGAAATCGTTTCCTCTATACTTGTTCAGATCAGGAAGAGATTCTCTCTCAGGTATTTCGT 702 pZnprom_typeI_F
CGAACACTTACCCTACAATTTAGTGAAATTTCTGTGTGATGTAGAATTCTCTAGATTCTTCTAATCGAGTTTTAGCTGAGAAAATTAGTGAAATGAAATGAGATTTTCCATTGATTGCT- 780 pAtZp4promoterCCAACACTTGTTTCAT--TTCAACC---TCACAATTCAGTG-AGA---CTCTG--TTTCACCGCTCAA---TTATCTGTCTTCTTCCATCT--TCCAATCGAATTTCCCCTTGATTGCTC 820 pZnprom_typeI_F
-AGATTCCAAAACTTTAGCTTGTTGTTCTGAATTGCACTTATTTGTTGTGTTGTATGGACCATGGAAACATCCAAAAGAGTCCATTTTGCAGA--------TCATTCCC---GA------ 899 pAtZp4promoterTAGATTCCGAAACTGTAA---ATTGTTCTGAATTGCCCTC-TCTGTTGC--TCTATGGACCATGAAAGC-CGAAAAAGAGTCCATTTTGCAGACAATGGCTTCATCTCCCACGAAAATCC 924 pZnprom_typeI_F
-----GACA 1001 pAtZp4promoterTCTGTGATG 1037 pZnprom_typeI_F
ZNT1 promoter ZRE
ZIP4 promoter ZRE
34% identity between ZIP4 and ZNT1 promoters
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Elucidating mechanisms of Zn-dependent gene regulation in Thlaspi caerulescensTranscription factor analysis – E2F1/2:
•Test E2F1/2 DNA binding to ZNT1 promoter viaDNAse I footprinting and electromobility shiftassays
•Characterize T-DNA knock-out line for AtE2F2
•Search for other trans-factors using yeast 1-hybrid analysis
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A Novel Quantitative in situ mRNAHybridization Technique for Rapidly
Determining Cell Specific Heavy Metal Transporter Gene Expression
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Overview of in situ mRNA hybridization method
cut out
max 2x2 mm
vacuum infiltrate with alkaline fixation solution
dehydrate
extract hydrophobic compounds
digest proteins
(denature)
hybridize with fluorescently labeled oligonucleotides
record images in CLSMquantify
rehydrate
postfixate
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Compartmentation of metals in leaves of Thlaspi and AlyssumZn/Cd/Ni accumulation in epidermal vacuoles
Compartmentation in leaves of Thlaspi caerulescens
Zn Mg P S Cl K0
2
4
6
8mature leaves
mM
/ mM
Ca
Zn Mg P S Cl K0
2
4
6
8 young leaves
mM
/ mM
Ca
upper epidermis upper mesophylllower mesophyll lower epidermis
Concentrations of elementsin leaf tissues
Zn K α line scan and dot map of a leaf
15 20 25 30 35 40 45 500
2
4
6
8
Linear Regression: Y = A + B * XParameter Value Error-----------------------------------------------A -0.057 1.027B 0.153 0.034-----------------------------------------------R SD N P-----------------------------------------------0.816 1.079 12 0.00118-----------------------------------------------
mM
Zn /
mM
Ca
cell width
regression lineconfidence limits
data points
Correlation between cell size and zinc concentration
Küpper H, Zhao F, McGrath SP (1999) Plant Physiology 119, 305-11
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ZNT1 mRNA localization in young leaves of Thlaspi caerulescens:Mesophyll, antisense probe
Overlay of green autofluorescence and red oligonucleotide fluorescence
Red oligonucleotide fluorescence
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ZNT1 mRNA localization in young leaves of Thlaspi caerulescens:Mesophyll, control with sense strand probe
Overlay of green autofluorescence and red oligonucleotide fluorescence
Red oligonucleotide fluorescence
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ZNT1 in young leaves of Thlaspi caerulescens Prayon:mesophyll, antisense probe
overlay of green autofluorescence and red oligonucleotide fluorescence
red oligonucleotide fluorescence
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ZNT1 mRNA localization in young leaves of Thlaspi caerulescens:Epidermis, antisense probe
Overlay of green autofluorescence and red oligonucleotide fluorescence
Red oligonucleotide fluorescence
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ZNT1 mRNA localization in young leaves of Thlaspi caerulescens:Stomata, antisense probe
Overlay of green autofluorescence and red oligonucleotide fluorescence
Red oligonucleotide fluorescence
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Summary of ZNT1 Leaf Localization Studies
1) ZNT1 expressed primarily in photosynthetic cells - guard cells in epidermis and mesophyll cells in leaf interior (high stringency & high affinity conditions)
2) ZNT1 appears to be involved in “normal” leaf Zn nutrition and not hyperaccumulation
3) Related members of Thlaspi ZIP family expressed in specialized large epidermal cells (metal accumulating cells?) and around veins (transfer from xylem to leaf?)
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ZNT1 mRNA localization in roots of Thlaspi caerulescens:Starting at tip of mature root, antisense probe
Series of optical cross sections moving back from root tip -overlays of green autofluorescence and red oligonucleotide fluorescence
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Susceptible and Tolerant yeast growing on metal enriched SD plates.
Searching for Thlaspi Cadmium Tolerance Genes
• Yeast transformed with T. caerulescens cDNA library are grown on high Zn or Cd plates.
• Tolerance phenotype is confirmed by replating; insert is isolated and identified.
Zn Tolerance Genes – Melinda KleinCd Tolerance Genes – Ashot Papoyan
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Clone Closest Match and Function Accession # GenBank Hit Reference
1 Brassica juncea metallothionein- AY486002 Y10849 Schafer et al. (1998)like protein
2 Arabidopsis thaliana AY486003 L15389 Zhou et al. (1994)metallothionen
3 Arabidopsis thaliana AY486004 U15130 Yeh et al. (1994)metallothionen
4 Arabidopsis thaliana AY486005 NM114760 Town et al.(2003)60S ribosomal protein L13
5 Arabidopsis thaliana putative AY486006 NM_118925 Town et al (2003)protein
6 Sinapis alba subunit of AY486007 Y07498 Wenng et al. ( 1989)of photosystem II
7 Arabidopsis thalina light AY486008 Z12120 Park et al. (1992)regulated kinase
8 Arabidopsis thalina putative AY486009 CAB87795 Rieger et al. (2000) protein
9 Arabidopsis thalina putative AY486001 AF412407 Richaud et al.(2001)heavy metal P-type ATPase
Thlaspi Genes Conferring Cd Tolerance in Yeast
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Athma4 ASTSKLNGRKLEGDDDYVVDLEAGLLTKSGNGQCKSSCCGDKKNQENVVMMKPSSKTSSD 776Tchma4 --------KKLEGVDDQGLDLEAGLLSKS---QCNSGCCGDQKSQEKVMLMRPASKTSSD 768 :**** ** :*******:** **:*.****:*.**:*::*:*:****** Athma4 HSHPGCCGDKKEEKVKPLVKDGCCSEKTRKSEGDMVSLSSCKKSSHVKHDLKMKGGSGCC 836 Tchma4 HLHSGCCGEKKQESVK-LVKDSCCGEKSRKPEGDMASLSSCKKS---NNDLKMKGGSSCC 824 * *.****:**:*.** ****.**.**:**.****.******** ::********.** Athma4 ASKNEKGKE-VVAKSCCEKPKQQVESVGDCKSGHCEKKKQAEDIVVPVQIIGHALTHVEI 895 Tchma4 ASKNEKLKEAVVAKSCCED-KEKTEGNVEMQILNLERGSQKK------------------ 865 ****** ** ********. *::.*. : : : *: .* : Athma4 ELQTKETCKTSCCDSKEKVKETGLLLSSENTPYLEKGVLIKDEGNCKSGSENMGTVKQSC 955 Tchma4 ---VGETCKSSCCGDKEKAKETRLLLASEDPSYLEK-------EERQTTEANIVTVKQSC 915 . ****:***..***.*** ***:**:..**** : :: . *: ****** Athma4 HEKGCSDEKQ--TGEITLASE---EETDDQDCSSGCCVN-EGTVKQSFDEKKHSVLVEKE 1009 Tchma4 HEKASLDIETGVTCDLKLVCCGNIEVGEQSDLEKGMKLKGEGQCKSDCCGDEIPLASEED 975 ***.. * : * ::.*.. * ::.* ..* :: ** *.. .: .: *:: Athma4 GLDMETGFC--------------------CDAKLVCCGNTEGEVKEQCR----LEIKKEE 1045 Tchma4 SVDCSSGCCGNKEELTQICHEKTCLDIVSCDSKLVCCGETEVEVREQCDLKKGLQIKNEG 1035 .:* .:* * **:******:** **:*** *:**:* Athma4 HCKSGCCGEEIQTGEITLVSE--EETESTNCSTGCC----------------VDKEEVTQ 1087 Tchma4 QCKSVRCGDEKKTEEITEETDNLKSESGDDCKSPCCGTGLKQEGSSSLVNVVVESGESGS 1095 :*** **:* :* *** :: :. .. :*.: ** *:. * . Athma4 TCHEKPASLVVSG---LEVKKDEHCESSHRAVKVETCCKVKIP--EACASKCRDRAKR-H 1141 Tchma4 SCCSKEGEIVKVSSQSCCASPSDVVLSDLEVKKLEICCKAKKTPEEVRGSKCKETEKRHH 1155 :* .* ..:* . .. .: *. .. *:* ***.* . *. .***:: ** * Athma4 SGKSCCRSYAKELCSHRHHHHHHHHHHHVSA 1172 Tchma4 VGKSCCRSYAKEYCSHRHHHHHHHHHVGAA- 1185 *********** ************* .:
* HMA Domain (GMTCxxC) is missing* Arabidopsis and Thlaspi HMA4s are 71% Identical
Alignment of 3’ ends of Arabidopsis and Thlaspi HMA4’s
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0µM Cd
75µM Cd
90µM Cd
OD600
1 0.1 0.01 0.001
ATPase
WT
ATPase
WT
ATPase
WT
Cd Tolerance for WT and TcHMA4 Transformed Yeast
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Cd2+ Accumulation
00.0020.0040.0060.0080.01
0.0120.0140.0160.0180.02
WT(5M
in)
TR(5Min)
WT(30
Min)
TR(30M
in)W
T(70M
in)TR(70
Min)
µMol
Cd/
106 C
ells
Pb2+ Accumulation
00.005
0.010.015
0.020.025
0.030.035
WT(5min)
TR(5min)W
T(30Min)
TR(30Min)
WT(70M
in)TR(70min)
µMol
Pb
/ 10
6 Cel
ls
Cd2+ and Pb2+ Accumulation for WT andTcHMA4 Transformed Yeast
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Cd Influx and Efflux
0
5
10
15
20
25
30
35
40
45
Influx Efflux
fmM
olC
d/10
6 cells
/min
Wild TypeATPase
Quantification of Unidirectional 109Cd Influx and Effluxin WT and TcHMA4 Transformed Yeast
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Root TcHMA4 Gene Expression in Response to Changesin Plant Zn and Cd Status
0 µM Zn 1 µM Zn 5 µM Zn 100 µM Zn 1 µM Zn 10 µM Cd 100 µM Cd
8.9 273 409 239 273 580 4641
µg Cd / g dwtµg Zn / g dwt
Root
Shoot 29 960 3055 5805 0.2 1228 5680
TcHMA4 gene expression strongly induced both by Zn deficiency and high Cd and Zn
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Does TcHMA4 Play a Role in Both Zn Nutrition and Heavy Metal Hyperaccumulation?
•Expressed primarily in the root•Under Zn deficiency does it function to provide n to the shoot?•In high Zn/Cd soils, does it function to translocatemetals to the shoot?•Preliminary results suggest it is expressed near root xylem•Is it an efflux transporter involved in xylem loading and root-to-shoot transport?
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384aa ---------------------------------------------MASLSSCKKSNNDLK 15141aa MLMRPASKTSSDHLHSGCCGEKKQESVKLVKDSCCGEKSRKPEGDMASLSSCKKSNNDLK 60 *************** 384aa MKGGSSCCASKNDKLKEVVVAKSCCEDKEKAEGNVEMQILNLEKGSQKKVGETCKSSCCG 75 141aa MKGGSSCCASKNDKLKEVVVAKSCCEDKEKAEGNVEMQILNLEKGSQKKVGETCKSSCCG 120 ************************************************************ 384aa DKEKAKETRLLLASEDPSYLEKEERQTTEANIVTVKQSCHEKASLDIETGVTCDLKLVCC 135 141aa DKEKAKETRLLLASED-------------------------------------------- 141 **************** 384aa GNIEVGEQSDLEKGMKLKGEGQCKSDCCGDEIPLASEEDSVDCSSGCCGNKEELTQICHE 195 141aa ------------------------------------------------------------ 384aa KTCLDIVSCDSKLVCCGETEVEVREQCDLKKGLQIKNEGQCKSVRCGDEKKTEEITEETD 255 384aa NLKSESGDDCKSLCCGTGLKQEGSSSLVNVVVESGESGSSCCSKEGEIVKVSSQSCCASP 315 384aa SDVVLSDLEVKKLEICCKAKKTPEEVRGSKCKETEKRHHVGKSCCRSYAKEYCSHRHHHH 375 384aa HHHHHVGAA 384
Alignment Of Partial Clones of TcHMA4
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Cd Tolerance for WT Yeast and Yeast Transformed with Partial TcHMA4 Clones
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Cd2+Accumulation for WT Yeast and Yeast ExpressingPartial TcHMA4 Clones
Cd2+ Accumulation
0
0.002
0.004
0.006
0.008
0.01
0.012
0.014
0.016
0.018
1 hour 3hours 5hours
Time
µMol
Cd/M
illio
n Ce
lls
WT141a.a.384a.a.
When expressed in plants, will they confer enhanced Cd toleranceand accumulation for phytoremediation purposes?
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Who Actually Did the Work?
Not Shown: Hendrik Kupper and Laura Seib (in situ gene expression techniques), Randy Clark (sorghum Al tolerance genes)