Modelling Human-Environment Interactions: Theories and Tools
Modelling the Interactions of Cells with the Environment
Transcript of Modelling the Interactions of Cells with the Environment
Luigi PreziosiDept Mathematical Sciences
Politecnico di Torino
[email protected]://calvino.polito.it/~preziosi
Modelling the Interactions of Cells with the Environment
Index
How do cells interact mechanically with the environment?
Why is it important?
What has been done from the modeling point of view?
Index
How do cells interact mechanically with the environment?
Why is it important?
What has been done from the modeling point of view?
Biological background
The cytoskeleton is an intricate network of protein filaments that extends throughout the cytoplasm.
Biological background
The cytoskeleton is an intricate network of protein filaments that extends throughout the cytoplasm.
Functions of the cytoskeleton
• Structural support for the cytoplasm
• Causes changes in cell shape• Drives cell division• Causes cell movements• Causes muscle contraction• Controls location of
organelles• Provides transport between
organelles
• Structural support for the cytoplasm
• Causes changes in cell shape• Drives cell division• Causes cell movements• Causes muscle contraction• Controls location of
organelles• Provides transport between
organelles
The actin cytoskeleton
• Keratocyte
• Keratocyte fragment
A. Verkhovsky
www.youtube.com/watch?v=saYK4Xseg2g
T
Actin polymerisation (Pantaloni and Carlier, 2002)
Actin filaments
Actin filaments are concentrated beneath the plasma membrane (cell cortex) and give the cell mechanical strength.
Assembly of actin filaments can determine cell shape and cause cell movement.
Association of actin filaments with myosin can form contractile structures.
www.sci.sdsu.edu/movies/actin_myosin_gif.html
• Motor proteins bind to actin filaments and microtubules and move by cycles of conformational changes using energy from ATP.
• One end of the protein can bind to specific cellular components.
myosinOriginal at: www.youtube.com/watch?v=vJ9ffKeUCvE&hl=it
Motor proteins
Cell crawling
• Motion of a melanoma cell
• Motion of a fibroblastOriginal at: cellix.imba.oeaw.ac.at/fileadmin/conferences/Videotour_CellMotility/fig3.mov
(Burridge & Chrzanowska-Wodnick)
(Burridge et al. Trends Cell Biol. 7, 342-347, 1997)
Cell crawling
Cell crawling
• Focal contacts and microtubulin
• Animation focal contact and cytoskeleton
• Making a focal contact(cellix.imba.oeaw.ac.at/fileadmin/conferences/Videotour_CellMotility/fig40.mov fig26.mov fig15.mov)
Focal contacts
Extra-cellular matrix
Extra-cellular matrix
(P. Friedl)
Index
How do cells interact mechanically with the environment?
Why is it important?
What has been done from the modeling point of view?
Mechanosensing = How cells sense mechanical forcesMechano-transduction = How cells respond to mechanical signals,
either directly or via the activation of signalling pathways
Macroscopicforce
Cell traction
Macroscopicforce
Mechanosensing & mechanotransduction
Guilak, … & Chen, Control of stem cells by physical interaction with the ECM,
Cell Stem Cell 5, 17-26 (2009)
Sun, Chen, Fu, Forcing stem cells to behave: A biophysical perspective of the cellular microenvironment
Ann. Rev. Biophys. 41, 519-542 (2012)
Mechanosensing = How cell celse mechanical forces Mechano-transduction = How cell respond to mechanical signals,
either directly or via the activation of pathways
Mechanosensing & mechanotransduction
Ingber, Mechanobiology and diseases of mechanotransductionAnnals Medicine 35, 1-14 (2009)
Abnormal ECM accumulation
Stretching of mesangial cells through ECM and integrins due to glomerular hypertension
Abnormal conversion of mechanical stress into intracellular gradients of electrical activity
Stretch activated signalling cascades due to stents and grafts
Dementhia
Vasculature feels and adapt to shear and pressure
Diseases of mechanotransduction
Insufficient mechanosensing
Excessive ECM
Enhanced ECM breakdown
Cell hypercontractility
Loss of contact inhibitionMatrix Metallo Proteinases
Excessive production of ECM
Diseases of mechanotransduction
Tumour-stroma interaction
Kass, Erler, Dembo & Weaver, Mammary epithelial cell: Influence of ECM composition and organization during development and tumorigenesisInt J Biochem Cell Biol 39, 1987-94 (2007)
Relations between ECM stiffness and cell tensile stress influences Proliferation Apoptosis Migration
Butcher, Alliston & Weaver, A tense situation: forcing tumour progression
Nat Rev Cancer 9, 108-122 (2009)
Tumour-stroma interaction
Control of stem cell fate: Genetic and molecular mediators (growth factors, transcription factors, …)
ECM interaction
ECM elasticity ECM morphology ECM mediated stress
Jones & Wagers, No place like home: Anatomy and function of the stem cell niche
Nature Rev 9, 11-22 (2008)
Tissue engineering: Controlling stem cell fate
Mechano-reciprocity
It mantains tensional homeostasis in the tissue Is necessary for development and tissue-specific differentiation Its loss promotes disease progression, including liver fibrosis, atherosclerosis and cancer
Butcher, Alliston, Weaver, A tense situation: forcing tumour progression
Nat Rev Cancer 9, 108-122 (2009)
Mechano-reciprocity
Mechano-reciprocity
Franzè, The mechanical control of nervous system developmentDevelopment 140, 3069-3077 (2013)
Mechano-reciprocity
Building stem cell niches
Jones & Wagers, No place like home: Anatomy and function of the stem cell niche, Nature Rev 9, 11-22 (2008)
Lindvall, Kokaia, Stem cells in human neurodegenerative disorders: Time for clinical translation?J. Clinical Inv 120, 29-40 (2010)Progress stem cells for the treatment of neurological disorders, Nature 441 1094-1096 (2006)
Lindvall, Kokaia, Stem cells in human neurodegenerative disorders: Time for clinical translation?J. Clinical Inv 120, 29-40 (2010)Progress stem cells for the treatment of neurological disorders, Nature 441 1094-1096 (2006)
Lindvall, Kokaia, Stem cells in human neurodegenerative disorders: Time for clinical translation?J. Clinical Inv 120, 29-40 (2010)Progress stem cells for the treatment of neurological disorders, Nature 441 1094-1096 (2006)
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Lindvall, Kokaia, Stem cells in human neurodegenerative disorders: Time for clinical translation?J. Clinical Inv 120, 29-40 (2010)Progress stem cells for the treatment of neurological disorders, Nature 441 1094-1096 (2006)
Interaction with ECM micropatterns
Guilak, … & Chen, Control of stem cell fate by physical interaction with the ECMCell Stem Cell 5, 17-26 (2009)
Cell-ECM contact are regulators of cell function
Interaction with ECM micropatterns
Théry, ... & JulicherExperimental and theoretical study of mitotic spindle orientationNature 447, 493-497 (2007)
Interaction with ECM micropatterns
Building a proper artificial ECM
Building a proper artificial ECM
Stevens & George, “Exploring and engineering the cell surface interface”, Science 310, 1135-1138 (2005)
Tissue engineering: building the stem cell nicheTissue engineering: building the stem cell niche
Tactile sensors
Flow sensors