Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael...

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S.I.R. Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt

Transcript of Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael...

Page 1: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

S.I.R. Modeling Epidemics with Differential Equations

Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt

Page 2: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

TOPICS The Model

Var iab les & Parameters , Ana lys is , Assumpt ions

Solut ion Techniques Vaccinat ion Birth/Death Constant Vaccinat ion wi th Bir th/Death Saturat ion of the Suscept ib le Populat ion Infect ion Delay Future of SIR

Page 3: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

VARIABLES & PARAMETERS

[S] is the susceptible population[I] is the infected population[R] is the recovered population1 is the normalized total population in the system

The population remains the same size No one is immune to infection Recovered individuals may not be infected again Demographics do not affect probability of infection

Page 4: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

VARIABLES & PARAMETERS

[α] is the transmission rate of the disease

[β] is the recovery rate

The population may only move from being susceptible to infected, infected to recovered:

Page 5: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

VARIABLES & PARAMETERS is the Basic Reproductive Number- the average

number of people infected by one person.

Initially,

The representation for will change as the model is improved and becomes more developed.

[] is the metric that most easily represents how infectious a disease is, with respect to that disease’s recovery rate.

Page 6: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

CONDITIONS FOR EPIDEMIC

An epidemic occurs if the rate of infection is > 0

If , and

○ It follows that an epidemic occurs if

Moreover, an epidemic occurs if

Page 7: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SOLUTION TECHNIQUES Determine equilibrium solutions for [I’] and [S’].

Equilibrium occurs when [S’] and [I’] are 0:

Equilibrium solutions in the form ( and :

Page 8: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SOLUTION TECHNIQUES Compute the Jacobian Transformation:

General Form:

Page 9: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SOLUTION TECHNIQUES Evaluate the Eigenvalues.

Our Jacobian Transformation reveals what the signs of the Eigenvalues will be.

A stable solution yields Eigenvalues of signs (-, -)

An unstable solution yields Eigenvalues of signs (+,+)

An unstable “saddle” yields Eigenvalues of (+,-)

Page 10: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SOLUTION TECHNIQUES

Evaluate the Data:Phase portraits are generated via Mathematica.

0.0 0.5 1.0 1.5 2.0

0.0

0.5

1.0

1.5

2.0

Susceptible

Infe

cted

Susceptible Vs. Infected Graph Unstable Solutions deplete the

susceptible population There are 2 equilibrium solutions One equilibrium solution is stable,

while the other is unstable The Phase Portrait converges to

the stable solution, and diverges from the unstable solution

Page 11: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SOLUTION TECHNIQUES

Evaluate the Data:Another example of an S vs. I graph with different

values of [].

𝑹𝟎

12952

Typical Values Flu: 2 Mumps: 5 Pertussis: 9 Measles: 12-18

Page 12: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

HERD IMMUNITY Herd Immunity assumes that a portion [p] of the

population is vaccinated prior to the outbreak of an epidemic.

New Equations Accommodating Vaccination:

An outbreak occurs if, or

Page 13: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

CRITICAL VACCINATION Herd Immunity implies that an epidemic can be

prevented if a portion [p] of the population is vaccinated.Epidemic: No Epidemic: Therefore the critical vaccination occurs at , or

○ In this context, [] is also known as the bifurcation point.

Page 14: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SIR WITH BIRTH AND DEATH

Birth and death is introduced to our model as:

The birth and death rate is a constant rate [m]

The basic reproduction number is now given by:

Page 15: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SIR WITH BIRTH AND DEATH

Disease free equilibrium(, )

Epidemic equilibrium, ),

Page 16: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SIR WITH BIRTH AND DEATH

Jacobian matrix

(,)

(

Page 17: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

CONSTANT VACCINATION AT BIRTH

New Assumptions

A portion [p] of the new born population has the vaccination, while others will enter the population susceptible to infection.

The birth and death rate is a constant rate [m]

Page 18: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

CONSTANT VACCINATION AT BIRTH

Parameters

Susceptible

Infected

Page 19: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

PARAMETERS OF THE MODEL

The initial rate at which a disease is spread when one infected enters into the population.

p = number of newborn with vaccination

< 1 Unlikely Epidemic

> 1 Probable Epidemic

Page 20: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

PARAMETERS OF THE MODEL

= critical vaccination value

For measles, the accepted value for , therefore to stymy the epidemic, we must vaccinate 94.5% of the population.

Page 21: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

CONSTANT VACCINATION GRAPHS

0.0 0.2 0.4 0.6 0.8 1.0

0.0

0.2

0.4

0.6

0.8

1.0

Susceptible

Infe

cted

• Non epidemic

< 1 p > 95 %

Susceptible Vs. Infected

Page 22: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

0.0 0.5 1.0 1.5 2.0

0.0

0.5

1.0

1.5

2.0

Susceptible

Infe

cted

CONSTANT VACCINATION GRAPHS

• Epidemic > 1 < 95 %

Susceptible Vs. Infected

Page 23: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

CONSTANT VACCINATION GRAPHS

Page 24: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

CONSTANT VACCINATION GRAPHS

Constant Vaccination Moving Towards Disease Free

Page 25: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SATURATION

New Assumption We introduce a population that is not constant.

S + I + R ≠ 1 is a growth rate of the susceptible K is represented as the capacity of the susceptible

population.

Page 26: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

SATURATION

The Equations

Susceptible

)

= growth rate of birth

= capacity of susceptible population Infected

= death rate

Page 27: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

THE DELAY MODEL People in the susceptible group carry the disease, but

become infectious at a later time. [r] is the rate of susceptible population growth. [k] is the maximum saturation that S(t) may achieve. [T] is the length of time to become infectious. [σ] is the constant of Mass-Action Kinetic Law.

The constant rate at which humans interact with one another“Saturation factor that measures inhibitory effect”

Saturation remains in the Delay model. The population is not constant; birth and death occur.

Page 28: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

THE DELAY MODEL

Page 29: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

THE DELAY MODEL

U.S. Center for Disease Control

Page 30: Modeling Epidemics with Differential Equations Ross Beckley, Cametria Weatherspoon, Michael Alexander, Marissa Chandler, Anthony Johnson, Ghan Bhatt.

FUTURE S.I.R. WORK

Eliminate AssumptionsPopulation DensityAgeGenderEmigration and ImmigrationEconomicsRace