Mobyle 1 0_new_features_new_types_of_service
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Transcript of Mobyle 1 0_new_features_new_types_of_service
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Mobyle 1.0: new features, new types of services
Hervé Ménager, Bertrand Néron, Vivek Gopalan, Sandrine Larroudé, Julien Maupetit, Adrien
Saladin, Pierre Tuffery, Yentram Huyen, Bernard Caudron
Bioinformatics Open Source Conference, July 15th, 2011
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What is Mobyle
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Providing an access to bioinformatics resources for biologists
?
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New types of services: Workflows
● Beyond the existing "interactive pipe" functionality
● Automated chaining or sequential/parallel jobs
● base is the same XML description as the other types of services,
● specificity: Execution
specified as the coordinated execution of multiple tasks
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Workflow forms
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Workflow results
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Workflow details and monitoring
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Workflows portal integration● In the portal's left menu,
searchable and sortable the same way as programs.
● In the "interactive pipe" menus
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Viewers: VARNA example
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Viewers: implementation● base is the same XML description as the other types of
services,
● specificity: includes a template for a custom chunk of HTML code.
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Other existing viewers
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Soon: viewers are good, editors are better!
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Other new features● Improved workspace management:
○ easier workspace cleanup○ bookmark->service links
● Execution engine flexibility○ multiple DRMs configuration allowed and multi-DRM
job routing.○ new supported DRM: LSF
● OpenID authentication
● Google Analytics reporting integration
thanks to Olivier Sallou (GenOuest)
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Acknowledgements
Institut PasteurBertrand NéronSandrine LarroudéCorinne MaufraisNicolas JolyBernard CaudronSophie Créno NCSU Ignazio CarboneTrent Monacell
RPBSJulien MaupetitPierre TufféryAdrien Saladin
LIPM ToulouseSébastien Carrère
GenOuestOlivier SallouAnthony Bretaudeau
NIAID BCBBVivek GopalanYentram Huyen
And many others...