Mississippi tools – a set of miRNA, siRNA, piRNA analysis tools Poster 6 also available at the...

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Mississippi tools – a set of miRNA, siRNA, piRNA analysis tools Poster 6 o available at the testtoolshed!

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http://mississippi.fr our (brand-)new small RNA analysis server

Mississippi tools a set of miRNA, siRNA, piRNA analysis tools

Poster 6also available at the testtoolshed!

Size matters for small RNAs!Basic simplifications / improvements: clipping

Basic simplifications / improvements: mapping

Cascade: quick overview of small RNA targes

What trackster cant do (yet?)

miRNATransposableElements

Inspecting a large number of smallRNA properties in a few plots

Christophe ANTONIEWSKIClement CARREBruno DA SILVAMargarita ANGELOVASafia DEDDOUCHE

mississippi.frmississippi toolsuite in testtollshed

Poster 6


Control siRNA

Control siRNA

Mutations to the piRNA Pathway Component Aubergine …INVESTIGATION Mutations to the piRNA Pathway Component Aubergine Enhance Meiotic Drive of Segregation Distorter in Drosophila

Mutations to the piRNA Pathway Component Aubergine …INVESTIGATION Mutations to the piRNA Pathway Component Aubergine Enhance Meiotic Drive of Segregation Distorter in Drosophila

Chapter 12 Computing siRNA and piRNA Overlap Signatures

Chapter 12 Computing siRNA and piRNA Overlap Signatures

local piRNA biogenesis · presumably through phased piRNA biogenesis [37–39] , since transcripts derived from unique genomic regions flanking the TE will not be the direct target

local piRNA biogenesis · presumably through phased piRNA biogenesis [37–39] , since transcripts derived from unique genomic regions flanking the TE will not be the direct target

Sirna Ab System

Sirna Ab System

Silencer siRNA Construction Kit

Silencer siRNA Construction Kit

aaron sirna

aaron sirna

AN ALGORITHM FOR DETERMINING FUNCTIONAL SIRNA. What is siRNA? cmallery/255/255hist/mcb4.1.dogma.jpg .

AN ALGORITHM FOR DETERMINING FUNCTIONAL SIRNA. What is siRNA? cmallery/255/255hist/mcb4.1.dogma.jpg .

Mutations to the piRNA Pathway Component Aubergine … · Mutations to the piRNA Pathway Component Aubergine Enhance Meiotic Drive of Segregation Distorter in Drosophila melanogaster

Mutations to the piRNA Pathway Component Aubergine … · Mutations to the piRNA Pathway Component Aubergine Enhance Meiotic Drive of Segregation Distorter in Drosophila melanogaster

Trans-acting siRNA

Trans-acting siRNA

PiRNA Shipra Paper

PiRNA Shipra Paper

Research progress of piRNA evolution Xuedong Pan 2012-3-28.

Research progress of piRNA evolution Xuedong Pan 2012-3-28.

TDRD5 binds piRNA precursors and selectively enhances ......ARTICLE TDRD5 binds piRNA precursors and selectively enhances pachytene piRNA processing in mice Deqiang Ding 1, Jiali Liu1,2,

TDRD5 binds piRNA precursors and selectively enhances ......ARTICLE TDRD5 binds piRNA precursors and selectively enhances pachytene piRNA processing in mice Deqiang Ding 1, Jiali Liu1,2,

siRNA and Epigenetic

siRNA and Epigenetic

Exploring retrotransposon regulation mechanisms via piRNA

Exploring retrotransposon regulation mechanisms via piRNA

Drosophila Interspecific Hybrids Phenocopy piRNA- Pathway Mutants

Drosophila Interspecific Hybrids Phenocopy piRNA- Pathway Mutants

piRNA-guided slicing of transposon transcripts …genesdev.cshlp.org/content/29/16/1747.full.pdfguided transcript cleavage is the dominant input into pri-mary piRNA biogenesis fuelling

piRNA-guided slicing of transposon transcripts …genesdev.cshlp.org/content/29/16/1747.full.pdfguided transcript cleavage is the dominant input into pri-mary piRNA biogenesis fuelling

Developmental piRNA profiles of the invasive vector mosquito … · 2016. 10. 28. · RESEARCH Open Access Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

Developmental piRNA profiles of the invasive vector mosquito … · 2016. 10. 28. · RESEARCH Open Access Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus

Cytoplasmic Compartmentalization of the Fetal piRNA ...repository.cshl.edu/27352/1/Hannon PLoS Genetics 2009.pdfCytoplasmic Compartmentalization of the Fetal piRNA Pathway in Mice

Cytoplasmic Compartmentalization of the Fetal piRNA ...repository.cshl.edu/27352/1/Hannon PLoS Genetics 2009.pdfCytoplasmic Compartmentalization of the Fetal piRNA Pathway in Mice

Blockade of Deubiquitylating Enzyme USP1 Inhibits DNA ... · 1.0 0 0 Control siRNA USP1 siRNA ol siRNA USP1 siRNA 50 % Cell viability 100 150 37 88 kDa USP1 GAPDH 0.2 0.4 Survival

Blockade of Deubiquitylating Enzyme USP1 Inhibits DNA ... · 1.0 0 0 Control siRNA USP1 siRNA ol siRNA USP1 siRNA 50 % Cell viability 100 150 37 88 kDa USP1 GAPDH 0.2 0.4 Survival