Lars Juhl Jensen
Medical network analysisLinking diseases and genes through
data and text mining
electronic health registries
disease trajectories
community resources
linking genes and diseases
electronic health registries
Jensen et al., Nature Reviews Genetics, 2012
Jensen et al., Nature Reviews Genetics, 2012
civil registration system
established in 1968
Jensen et al., Nature Reviews Genetics, 2012
national discharge registry
6.2 million patients
119 million diagnoses
Jensen et al., Nature Reviews Genetics, 2012
statistical analysis
contingency table
Jensen et al., Nature Reviews Genetics, 2012
confounding factors
type of hospital encounter
Jensen et al., Nature Communications, 2014
“unknown unknowns”
temporal correlations
disease trajectories
Jensen et al., Nature Communications, 2014
trajectory networks
Jensen et al., Nature Communications, 2014
specific questions
alcohol-related sepsis
Beck et al., Scientific Reports, 2016
community resources
functional associations
disease–gene associations
curated knowledge
protein complexes
established disease genes
experimental data
physical interactions
Jensen & Bork, Science, 2008
named entity recognition
gene/protein dictionary
disease dictionary
different formats
different identifiers
affinity purification
von Mering et al., Nucleic Acids Research, 2005
cooccurrence score
score calibration
von Mering et al., Nucleic Acids Research, 2005
implicit weighting by quality