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Transcript of link.springer.com978-3-642-48380-6/1.pdf · References 233 References 1. Matsubara, H., Smith, E....
References 233
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Appendices
A. Tabular Index of LYSIS Enzyme Codes
Code Proteinase (recommended name or synonym; cf. code entry)
XAO Cathepsin E XAI Erythrocyte membrane aspartic endopeptidase I, II, III
Erythrocyte membrane acidic proteinase I, II, III XA2 Fusarium monilifonne aspartic endopeptidase XA3 lrpex laeteus aspartic endopeptidase B XA4 Pycnoporus eoeeineus aspartic endopeptidase
cf.1'rametes sanguinea aspartic endopeptidase XAS Seytalidium lignieo/um aspartic endopeptidase A XA6 Seytalidium lignieolum aspartic endopeptidase B XA 7 Aspergillus sojae aspartic endopeptidase I
Aspergillus sojae carboxyl proteinase I XAS Drosera aspartic endopeptidase XA9 Immunodefficiency virus aspartic endopeptidase
HIV asp-proteinase Gag-pol proteinase
XAA Pepsin Pepsin A Pepsin D
XAB PepsinB Parapepsin I
XAC Pepsin C Parapepsin II
XAD Gastricsin cf. Gadus ogae proteinase 2
XAE Chymosin Rennin Chymase
XAP Cathepsin D Lung acid proteinase Proteinase I
XAG Aspergillus oryzae aspartic endopeptidase Takadiastase Trypsinogen kinase
XAH Aspergillus saitoi aspartic endopeptidase Aspergillopeptidase A cf. Molsin
XAI Aspergillus niger maerosporus aspartic endopeptidase A Proctase A
Appendices 283
284
Code
XAJ
XAK XAL
XAM
XAN
XAP XAQ
XAR XAS XAT XAU
XAV
XAW XAY XAZ
XBO XCO XCI
Appendices
Proteinase
Penicillium janthinellum aspartic endopeptidase Penicillopepsin Peptidase A penicillium janthinellum cf. Penicillium brevicontactum endopeptidase cf. Penicillium expansum endopeptidase cf. Penicillium Italicum endopeptidase cf. Penicillium sptnulosum endopeptidase cf. Penicillium stipitatum endopeptidase cf. Penicillium vermiculatum endopeptidase cf. Penicillium wortmanii endopeptidase Candida albicans aspartic endopeptidase Rhizopus aspartic endopeptidase Rhizopus pepsin Endothia parasitica aspartic endopeptidase Endothiapepsin cf. Rennet Mucor miehei aspartic endopeptidase Mucor pussilus aspartic endopeptidase Mucor rennin cf. Rennilase Paeci!omyces varloti aspartic endopeptidase Yeast aspartic endopeptidase A Baker's yeast proteinase A Saccharomyces aspartic proteinase Rhodotorula aspartic endopeptidase Physarum aspartic endopeptidase Plasmodium aspartic endopeptidase Adrenal aspartic endopeptidase Adrenal acid proteinase Adrenal cathepsin D Thyroid aspartic endopeptidase Nepenthes aspartic endopeptidase Nepenthesin Lotus aspartic endopeptidase Sorghum aspartic endopeptidase Renin Isorenin Angiotensinogenase Angiotensin-forming enzyme Monascus kaoliDng aspartic endopeptidase Tobacco etch virus cysteine endopeptidase Calpain Calcium-activated neutral proteinase CAFCANP CASF KAF CANPI CANP2 CANPII CANP3 cf. Receptor-transforming factor cf. RTF
Code
XC2 XCA
XCB XCC
XCD XCE XCF
XCO XCH
XCI
XCJ
XCK
XCL
XCM
XCN XCP
XCQ
XCR
XCS
XCT
XCU
XCV
XCW XCY XCZ XEO XEI
XE2
Proteinase
Cathepsin I Ehrlich ascites Cathepsin B Cathepsin B I Papain Ficin Ficin II Ficin III Bromelain Chymopapain Papaya proteinase III Papaya peptidase Asc1epain Clostripain Clostridiopeptidase B Streptococcus cysteine endopeptidase Streptococcal peptidase A Oamma-glutamyl hydrolase Carboxypeptidase 0 Conjugase Staphylococcus aureus cysteine endopeptidase Staphylococcal proteinase II Actinidin Actinidia anionic protease Cathepsin L Cathepsin B3 Cathepsin BA cf. Cathepsin S Cathepsin H Prolyl endopeptidase thiol-dependent Prolyl-D,L-alanine peptidylhydrolase Endorphin-gamma-generating cysteine endopeptidase Endorphin-generating enzyme Arg-EOE-gamma EI enzyme Dynorphin-converting enzyme Membrane-bound brain cysteine endopeptidase Soluble brain cysteine endopeptidase Endo-oligopeptidase A Adrenal medulla cysteine endopeptidase Proenkephalin converting enzyme Cathepsin N Collagenolytic cathepsin Arg-Lys esteropeptidase Somatostatin-28 convertase Aleurain Se"atia marcescens cysteine endopeptidase 73kDa Soluble epidermal cysteine endopeptidase Cathepsin 0 Coagulation factor VIla Proconvertin Coagulation factor IXa Christmas factor activated
Appendices 285
286 Appendices
Code Proteinase
XE3 RVVX Vipera russelli endopeptidase RVVX Russell's viper venom factor X activator Coagulation factor Russell RVVX
XE4 Vipera Russelli endopeptidase RVVV Russell's viper venom factor V activator Coagulation factor Russell RVVV RVVV
XES Erythrocyte neutral endopeptidase Ca-dependent XE6 Cucumisin XE7 Prolyl endopeptidase
Endo-oligopeptidase B Post-proline cleaving enzyme Post-proline endopeptidase Kininase B TRH-deamidase Thyroliberin deamidase TRF deamidase
XES Coagulation factor Xla XE9 Agkistrodon contotrix protein C activator
ACC-C XEA Chymotrypsin
Chymotrypsin A alpha-Chymotrypsin cf. Chymotrypsin B
XEB Chymotrypsin hornet VCP VOP
XEC Chymotrypsin C cf. Procarboxypeptidase A subunit II
XED Metridium endopeptidase A Sea anemone proteinase A
XEE Trypsin XEF Pseudo trypsin
Trypsin pseudo-XEG Thrombin
Fibrinogenase XEH Coagulation factor Xa
Prothrombase Stuart factor activated Thrombokinase
XEI Plasmin Fibrinase Fibrinolysin cf. Neoplasmin cf. Miniplasmin cf. Val-Plasmin
XEJ Enteropeptidase Enterokinase
XEK Acrosin Acrosomal proteinase
XEL Myxobacter alpha-lytic serine endopeptidase Sorangium alpha-lytic proteinase
Code
XEM
XEN
XEP
XEQ XER
XES
XET XEU XEV XEW
XEY XEZ
XFO
XFl
XF2 XF3 XF4 XFS XF6
XF7 XF8
XF9
XFA
Proteinase
Subtilisin A Subtilisin B Subtilisin BPN' Subtilisin Carlsberg Subtilisin Nagarse Subtilisin Novo Subtilopeptidase A Subtilopeptidase B Subtilopeptidase C cf. Bacterial proteinase Novo cf. Alkalase Novo Escherichia coli periplasmic endopeptidase I Escherichia coli protease I Tritirachium alkaline endopeptidase Proteinase K Arthrobacter serine endopeptidase Pseudomo1las aerugi1losa serine endopeptidase Pseudomo1las aerugi1losa serine elastase Thermomycolin Thermomycolase Streptomyces serine endopeptidase thermophilic Ca1ldida lipolytica serine endopeptidase Aspergillus j1avus alkaline endopeptidase Bitis gabo1lica serine proteinase Gabonase Te1lebrio alpha-endopeptidase Staphylococcus aureus serine endopeptidase V8-proteinase Er proteinase Staphylococcal proteinase I Acremo1lium kilie1lse serine endopeptidase cf. Acremo1lium chrysoge1lum serine proteinase Bothrops atrox serine endopeptidase (platelet activating) Thrombocytin Hypodermin A Hypodermin B Uca pugilator trypsin-like endopeptidase II Propheromone convertase Y Small intestine muscle serine endopeptidase RMCPIl Rat mast cell proteinase II SI protease Streptomyces erythreus trypsin-like serine endopeptidase Streptomyces fradiae trypsin-like serine endopeptidase Streptomycesfradiae protease IV Streptomyces griseus serine endopeptidase A Pronase (component) Agkistrodo1l rhodostoma serine endopeptidase Akistrodo1l rhodostoma endopeptidase ARH alpha Ancistrodon rhodostoma serine endopeptidase ARHalpha Arvin Ancrod cf. ARH beta
Appendices 287
288 Appendices
Code Proteinase
XFB BothTOpS atTox serine endopeptidase Batroxobin
XFC CTota/us adamanteus serine endopeptidase Crotalase
XFD Plasminogen activator Tissue plasminogen activator Urokinase
XFE Uca pugilatoT collagenolytic endopeptidase Collagenase Uca pugilatoT
XFF Entomophthora collagenolytic endopeptidase Collagenase Entomophthora
XFG Kallikrein plasma Kininogenin Kininogenase
XFH Kallikrein tissue Kallikrein urinary Kallikrein glandular Kallikrein pancreatic Kallikrein salivary Kallikrein submandibular cf. Epidermal growth factor-binding protein cf. Esterase B cf. Nerve growth factor endopeptidase beta cf. Nerve growth factor gamma subunit cf. Proteinase S I cf. Proteinase S3 cf. Proteinase V
XFI Elastase pancreatic XFJ Elastase leukocyte
Neutrophil elastase PMN elastase Granulocyte elastase
XFK Coagulation factor XIIa Hageman factor activated HFa
XFL Skeletal muscle serine endopeptidase Chymase Mast cell proteinase I RMCPI Rat muscle cell protease I SK protease
XFM Submaxillary serine endopeptidase A Submandibular proteinase A Arg-C proteinase Endoproteinase Arg-C cf. Submandibulary protease V rat cf. RSP-V
XFN Complement component elr XFP Complement component c3 convertase (classical)
Complement component cS convertase (classical) Complement C2a-complex
XFQ C3b inactivator
Code Proteinase
XFQ C3blNA
XFR
XFS
XFT
XFU XFV
XFW XFY XFZ
XGO
XGl
XG2
XG3 XG4
XGS
XG6 XG7 XG8 XG9 XGA
XGB
XGC XGD
KAF Factor C Conglutinogen-activating factor Complement factor D C3-proactivator convertase Complement component c3 convertase (alternative) Complement component cS convertase (alternative) Complement Bb-complex Yeast serine endopeptidase B Baker's yeast proteinase B Saccharomyces serine proteinase Hypoderma collagenase Achromobacter lyticus endopeptidase I Lysyl bond proteinase Endoproteinase Lys-C Lysyl endopeptidase Achromobacter protease I Leukocyte membrane neutral endopeptidase Deinococcus serine endopeptidase Cathepsin R Cathepsin ribosomal Ribosomal serine proteinase Leu-proteinase Leucine-specific serine proteinase IRCM-serine proteinase I Prohormone serine proteinase Pituitary maturation enzyme Euphorbain Euphorbain d Euphorbain k Euphorbain 1 Desulfurococcus serine endopeptidase Thermus serine endopeptidase Aqualysin 1 Aspergillus oryzae alkaline endopeptidase Aspergillopeptidase B Aspergillopeptidase C Complement component cis Actinomyces serine proteinase Parasilurus collagenolytic serine endopeptidase Erythrocyte neutral proteinase Streptomyces griseus serine endopeptidase B Pronase(component) Streptomyces griseus serine endopeptidase C Alkaline proteinase C Streptomyces griseus protease 1 Elastase-like enzyme III Para-Nitrophenylacetate hydrolase II Chymoelastase guanidine- stable Pronase (component) Streptomyces rutgersensis serine endopeptidase A Adrenal medulla serine endopeptidase
Appendices 289
290
Code
XGE XGF XGG XGH XGl
XGJ
XGK XGL
XGM XGN XGP XGQ XGR XGS XGT XGU XGV XGW XGY
XGZ XHA
XMO
XMl
XM2
XM3 XM4
XM5 XM6 XM7 XM8 XM9
Appendices
Proteinase
Chromatin neutral endopeptidase Halobacrerlum extracellular serine endopeptidase Elastase alkaline bacterial Neurospora crassa extracellular alkaline endopeptidase Streptomycesfradiae serine endopeptidase Ib Streptomyces fradiae protease Ib Streptomyces fradiae serine endopeptidase II Streptomyces fradiae protease II Streptomyces fradiae serine endopeptidase III Proteinase E Endopeptidase E pancreatic Pancreatic neutral proteinase Protein C activated Astacus j1uviatilis trypsin-like endopeptidase Chymotrypsin II Halocynthia roretzi serine proteinase Prolyl-endopeptidase Flavobacterium Chymotrypsin-like skin endopeptidase Escherichia coli cytoplasmic serine endopeptidase Re Escherichia coli cytoplasmic serine endopeptidase So Bombyx morl trypsin-like endopeptidase Medullasin Tonin Salivain Tryptase Tenebrio beta-endopeptidase Tenebrlo trypsin Membrane-bound metalloendopeptidase Enkephalinase A Kidney brush border neutral proteinase Kidney membrane-bound neutral proteinase Endopeptidase-24.11 cf. Enkephalinase B Sea urchin hatching endopeptidase Hatching enzyme Immunoglobulin Al endopeptidase Streptococcus sanguis Streptococcus sanguis IgA protease cf. Streptococcus mitor IgA protease Procollagen N -endopeptidase Soluble brain metalloendopeptidase Soluble cytoplasmic endopeptidase Endopeptidase 24.15 Aplysia metalloendopeptidase Aspergillus ochraceus neutral endopeptidase Procollagen C-endopeptidase Trimeresurus metalloendopeptidase H2 Collagenase type IV Leukocyte Gly-Xaa endopeptidase Gelatinase Matrix metalloproteinase 2
Code
XMA
XMC
XMD
XME
XMF XMG
XMH
XMI
XMJ XMK
XML XMM
XMN XMP
XMQ XMR XMS XMU
XMV
XMW
XMY XMZ XNO
XNl
Proteinase
Crotalus atrox metalloendopeptidase Ht-d Crotalus atrox hemorrhagic toxin Ht-d Crotalus atrox proteinase alpha Ht-b Ht-c Ht-e Clostridium histolyticum collagenase Clostridiopeptidase A Pseudomonas aeruginosa neutral endopeptidase Elastase Pseudomonas aeruginosa Pseudomonas aeruginosa alkaline endopeptidase PAP Escherichia freundi endopeptidase Thermolysin Bacillus thermoproteolyticus neutral proteinase Bacillus subtilis neutral endopeptidase Bacillus subtilis var .amylosacchariticus neutral endopeptidase Bacillus amylo/iquefaciens neutral endopeptidase Bacillus cereus neutral endopeptidase Staphylococcus aureus neutral endopeptidase Staphylococcal proteinase III Proteinase Es Micrococcus caseolyticus neutral endopeptidase Sarcina neutral endopeptidase Coccus P proteinase Streptococcus thermophilus intracellular endopeptidase Streptomyces griseus neutral metalloendopeptidase Pronase (component) Aspergillus oryzae neutral endopeptidase Myxobacter beta-lytic endopeptidase Sorangium beta-lytic proteinase Se"atia marcescens extracellular endopeptidase Sporotrichum pulverulentum endopeptidase I Sporotrichum pulverulentum endopeptidase II Agkistrodon leucostoma neutral endopeptidase Leucostoma peptidase A Collagenase vertebrate Matrix metalloproteinase 1 Achromobacter iophagus collagenase Collagenase Vibrio alginolyticus var.iophagus cf. Collagenase B Achromobacter iophagus cf. Collagenase Acinetobacter sp. cf. Collagenase Empedobacter cf. Collagenase Pseudomonas marinoglutinosa cf. Collagenase Aspergillus scleroticum Trichophyton schoenleinii collagenase Trichophyton mentagrophytes keratinase Meprin Membrane metalloendopeptidase 2 PABA-peptide hydrolase PPH Neurotensin neutral metalloendopeptidase
Appendices 291
292
Code
XN2
XN3
XN4
XNS XN6 XN7
XNA
XNB XNC
XND
XNE
XNF
XNH XNI
XNJ
XNK
XNL
XNM
XNN
XNP XNQ
XNR XNS
XU! XU2 XU3 XU4
XU6
XU7 XU8
Appendices
Proteinase
Immunoglobulin Al endopeptidase Haemophilus inj1uenzae 2 Haemophilus inj1uenzae IgA protease 2 Matrix metalloendopeptidase 6 Acid metalloproteinase Crotalus atrox metalloendopeptidase Ht-a Crotalus atrox hemorrhagic toxin a Agkistrodon halys proteinase a Agkistrodon halys proteinase b Agkistrodon halys proteinase c Agkistrodon halys endopeptidase Immunoglobulin Al endopeptidase Neisseria meningitidis I Neisseria meningitidis protease I Aeromonas neutral endopeptidase Immunoglobulin Al endopeptidase Neisseria meningitidis 2 Neisseria meningitidis IgA protease 2 Immunoglobulin Al endopeptidase Neisseria gono"hoe type 2 Neisseria gono"hoe IgA protease 2 Immunoglobulin Al endopeptidase Haemophilus inj1uenzae I Haemophilus inj1uenzae IgA protease I cf. Hemophilus aegypticus 19A protease Immunoglobulin Al endopeptidase Streptococcus pneumoniae I Streptococcus pneumoniae IgA protease Streptococcus diacetilactis neutral endopeptidase Al Kidney neutral metalloendopeptidase Kidney microsomal metalloendopatidase Crotalus adamanteus metalloendopeptidase II cf. Crotalus adamanteus metalloendopeptidase I Bacillus thuringiensis neutral metalloendopeptidase Inhibitor A Bacillus thuringiensis InA Immunoglobulin AI-A2 endopeptidase Clostridium ramosum Clostridium ramosum AI-A2 protease Immunoglobulin Al endopeptidase Neisseria gono"hoe type I Neisseria gono"hoe IgA protease I Streptococcus eremoris metalloendopeptidase Proteinase EP-II Bacillus cereus collagenolytic endopeptidase Uterus metalloproteinase Matrix metalloproteinase 7 Streptomyces collagenase Penicillium roque/orti neutral endopeptidase Penicillium roque/orti proteinase II Cathepsin II Ehrlich ascites Lipotropin beta activating enzyme Cowpea mosaic virus endopeptidase Crotalus horridus endopeptidase HP-IV Hemorrhagic proteinase IV Escherichia coli membrane endopeptidase IV Escherichia coli protease IV Penicillium chrysogenum endopeptidase Pituitary anterior Ca-independent endopeptidase LH-RH degrading proteinase
Code
XU9 XUA XUB
XUC XUD XUE XUF XUG XUH XUI
XUJ XUK XUL XUM XUN
XUP XUQ
XUR
XUS XUT XUU
XUV XUW
XUy XUZ
XVO XVI
XV2
Proteinase
Pituitary post-Leu-Leu endopeptidase Agavain Astacus fluviatilis low mol. wt endopeptidase Crayfish low mw protease Crayfish small-molecule proteinase Procollagenase activator Gliocladium endopeptidase Hurain Streptomyces keratinase alkalophilic Mexicanain Penicillium notatum extracellular endopeptidase Peptidoglycan endopeptidase Gly-Gly endopeptidase Lysostaphin Flavobacterium L-ll enzyme Pinguinain Scopulariopsis endopeptidase Solanain Tabernamontanain Echis carinatus prothrombin-activating endopeptidase Echarin Myxobacter AL-I endopeptidase I Lysobacter enzymogenes endopeptidase Lys-C proteinase Myxobacter AL-I proteinase II Proteinase C Tissue endopeptidase degrading collagenase synth.substrate CLP PZ-peptidase Armillaria mellea neutral endopeptidase Mytilidase Signal peptidase Leader peptidase Phage procoat-leader peptidase Proiipoprotein-signal endopeptidase Transport peptidase HOSP Astacus leptodactylus low mol.weight endopeptidase Bacillus megaterium neutral endopeptidase Megateriopeptidase Allomyces Ca-activated endopeptidase Bothrops jararaca endopeptidase A Bothrops proteinase A Reptilase R Repressor rec-A activated auto cleavage Pro-opiomelanocortin-converting proteinase Pro-opiocortin converting enzyme Pro-insulin-processing endopeptidase Beta-endorphin synthase ACTH synthase PCE Pseudomurein endopeptidase
Appendices 293
294 Appendices
Code Proteinase
XV3 Pro-gonadoliberin proteinase Pro-gonadotropin-releasing-hormone proteinase GAP-releasing enzyme
XV4 Angiotensin-converting enzyme ACE
XVS Yeast endopeptidase yscD XV6 Yeast endopeptidase yscE XV7 TrimerelUTUs basic endopeptidase XV8 Oxyuranus scutellatus prothrombin-activating endopeptidase XV9 FN-gelatinase
Fibronectin gelatinase XVA Poliovirus endopeptidase
Poliovirus protein 3C Proteinase 3C
XVB Proteus mirabllu alkaline endopeptidase XVC Pseudomonas tragi endopeptidase
Asp-N endopeptidase XVD Serratia species alkaline endopeptidase XVE Tachyp/eus clotting endopeptidase
cr. Tachyp/eus protease N cr. Tachyp/eus factor B activated
XVF Tetrahymena extracellular endopeptidase Ep(+G) XVG Tetrahymena extracellular endopeptidase EP(-G) XVH Tetrahymena intracellular endopeptidase XVI Hevain
cr. E/aeophorbiJI proteinase XVJ Bacteriophage T4 maturation proteinase XVK Guanidinobenzoatase XVL Insulin-degrading endopeptidase
IDE Insulin protease
XVM Submaxillary proteinase A XVN Submaxillary proteinase B
cf. Submandibular esterase B XVP Gamma-renin
Renin gamma XVQ Stromelysin
Matrix metalloproteinase 3 Transin
XVR Entamoeba endopeptidase XVS Valyl-proteinase XVT Autolysin sporangial XVU Autolysin gamete XVV Encephalomyokarditis virus endopeptidase
EMC proteinase XVY Yeast endopeptidase yscF
Propheromone convertase yscF XVZ Bacterioities gingiva/is prolyl-endopeptidase XWA FN-laminase
Fibronectin laminase XWB Agkistrodon rhodostoma endopeptidase gamma
ARHgamma XWC Sepia endopeptidase
Code
XWD
XWE XWF XWG
Proteinase
Lens neutral endopeptidase Pituitary cation-sensitive neutral endopeptidase Trimeresurus mucrosquamatus hemorrhagic factor a Trimeresurus mucrosquamatus hemorrhagic factor b Bothropasin
Appendices 295
B. Tabular Index of LYSIS Protein Codes
Code Protein Source
AOOP Alphat-acid glycoprotein pre- Rat, Rattus norvegicus (plasma) A02 Actin Rabbit, Oryctolagus cuniculus
(skeletal muscle) A03 Acyl carrier protein Escherichia coli E26 A04 Acylphosphatase Turkey, Meleagris gallopavo
(muscle) AOS Protein kinase CAMP-dependent type Bovine, Bos taurus (skeletal
I regulatory subunit muscle) A06 Adenovirus glycoprotein E3/16 Adenovirus A07 adenylate kinase, ATP:AMP- Pig, Sus scrola (skeletal muscle)
phosphotransferase A08 Adenylate kinase AKI Human, Homo sapiens A09 Adrenodoxin Bovine, Bos taurus (adrenal gland) AlO Alcohol dehydrogenase E-chain Horse, Equus cabal/us (liver) AlO Alcohol dehydrogenase Baker's yeast, Saccharomyces
cerevisiae All Alcohol dehydrogenase Baker's yeast, Saccharomyces
cerevisiae A12 Fructose-biphosphate aldolase, Rabbit, Oryctolagus cuniculus
aldolase (muscle) A13 Allergen RaS Short ragweed, Ambrosia eliator,
(pollen) A14 Alloantigen H-2K Mouse, Mus musculus AlSA Allophycocyanin alpha-chain Cyanobacterium, Mastigoc/adus
laminosus AlSB Allophycocyanin beta-chain Cyanobacterium, Mastigoc/adus
laminosus A16B Allophycocyanin beta-chain Cyanobacterium, Anabaena
variabilis Al7P Alpha-factor mating pheromone pre- Baker's yeast, Saccharomyces
cerevisiae Al8 Coat protein Alfalfa mosaic virus A19 Amylase A taka-, taka-amylase A Aspergillus oryzae A20 Alpha-amylase Pig, Sus scrola (pancreas) A2lP Alpha-amylase pre- Mouse, Mus musculus (liver,
salivary gland) A22P Alpha-amylase pre- Rat, Rattus norvegicus (pancreas) A23 Amyloid P-component Human, Homo sapiens (plasma)
296 Appendices
Code Protein Source
A24 Amyloid protein AA, protein AA Pekin duck, Anas platyrhynchos (liver amyloidosis)
A25 Amyloid-related apoprotein ApoSAAI Human, Homo sapiens (plasma) A26 Amyloid-fibril protein AR, immuno- Human, Homo sapiens
globulin lambda AR light chain A27 Amyloid protein AS Human, Homo sapiens (liver amyloid
fibrils) A28 Azotoflavin flavodoxin Azotobacter vinelandii A29A Angiotensin I,hypertensin I Synthetic A29P Angiotensinogen, renin-substrate Human, Homo sapiens (plasma)
globulin A29V Angiotensin U(Va15), hypertensin Synthetic
U(VaI5) A30 Anthopleurin A Anthopleura xanthogrammica A31 Azurin Pseudomonas fluorescens A31B Azurin Pseudomonas fluorescens biotype 8 A3IC Azurin Pseudomonas fluorescens biotype C A31D Azurin Pseudomonas fluorescens biotype D A32 Apoferritin Human, Homo sapiens (liver) A33 Apoferritin light chain Horse, Equus caballus A34 Apolipoprotein A-II Rhesus macaque, Macaca mulatta A35 Apolipoprotein Al Rat, Rattus norvegicus A35P Apolipoprotein Al pre- Rat, Rattus norvegicus (liver) A36P Apolipoprotein 8-100 pre-, low Human, Homo sapiens (plasma)
density lipoprotein B, LDL A37 Apolipoprotein very low density Human, Homo sapiens (plasma)
C-I, ApoLP-Ser A38 Apolipoprotein E Phe-,apo-E Human, Homo sapiens (plasma) A39 Apolipoprotein high density gluta- Human, Homo sapiens (plasma)
mine l,apoLP-Gln-I,apoLP-A-1 A40 Apovitellenin I Emu, Dromaius novae-hollandiae
(egg yolk) A41 Apovitellenin I pre- Chicken, Gallus gallus (egg yolk) A42 Aspartate transcarbamylase Escherichia coli
regulatory subunit A43 Aspartate transcarbamoylase Escherichia coli
catalytic subunit A44 Aspartate aminotransferase Pig, Sus scrofa (heart) A45 Aspartokinase I-homoserine Escherichia coli
dehydrogenase I A46 Avidin Chicken, Gallus gallus (egg white) A47P Alphal-acid glycoprotein pre-, Human, Homo sapiens
orosomucoid A48 Anthopleurin C Giant green sea anemone,
Anthopleura elegant A49P Amylase pre- Dog, Canisfamiliaris (pancreas) A50 Alcohol dehydrogenase S-chain (liver) A51 Apolipoprotein AI, apoAI Chicken, Gallus gallus (plasma) A52 Apolipoprotein AI, apoAI Rabbit, Oryctolagus cuniculus
(plasma) A53P Apolipoprotein A-II prepro- Human, Homo sapiens (plasma) A54 Aspartic acid-rich peptide Soybean, Glycine max (seed) A55C ATPase NaK gamma-subunit Sheep, Ovis aries (kidney)
Appendices 297
Code Protein Source
AS6 Acetyl-CoA carboxylase Chicken, Gal/us gal/us (liver) AS7 Angiotensinogen Dog, Canis familiaris (plasma) AS8 Angiotensinogen Rat, Rattus norvegicus (plasma) AS9 Amidase aliphatic Pseudomonas aeruginosa PACl42 A60 Renin synthetic substrate Synthetic A61 Amyloid protein AA, protein AA Mouse, Mus musculus (spleen,
secondary amyloidosis) A62 Acylphosphatase Guinea pig, Cavia porce/lus
(skeletal muscle) A63 Apolipoprotein C-1II Human, Homo sapiens (plasma) A64 Angiogenin Human, Homo sapiens (plasma) A6S Alanine racemase DadB Salmonella typhimurium A66 Alanine racemase Alr Salmonella typhimurium A67 Atrial natriuretic factor, ANF Rat, Rattus norvegicus (atrial
cardiocytes ) A68 Adenylate kinase Carp, Letiopus bubalus (muscle
cytosol) A69 Aspergillus flavus alkaline Aspergillus flavus
endopeptidase
BOO Immunoglobulin G myeloma Tew kappa Human, Homo sapiens (urine) -chain
BOI Bacillus cereus neutral proteinase Bacillus cereus X3 B02 Basic low-mw protein Australian black swan, Cygnus
atratus (egg white) B03 Immunoglobulin G myeloma Ni kappa Human, Homo sapiens (urine)
-chain B04 Immunoglobulin G myeloma Bo lambda Human, Homo sapiens (urine)
-chain BOS Immunoglobulin G myeloma New lambda Human, Homo sapiens (urine)
-chain B06 Immunoglobulin G myeloma Ti kappa Human, Homo sapiens (urine)
-chain B07 Bradykinin Synthetic B07A Bradykinin Met-Lys- Synthetic B08 Bacillus subtilis neutral Bacillus subtilis
proteinase B09P Beta-Iactamase pre- Escherichia coli (plasmid) BI0 Blue copper protein Alcaligenes faecalis Bl2 Beta-lactoglobulin Bovine, Bos taurus (milk) B13 Beta-amylase Barley, Hordeum sativum (seed)
COOP Carboxypeptidase A prepro- Rat, Rattus norvegicus COl Calcium-binding protein Scallop, Patinopecten yessoensis
sarcoplasmic (striated muscle) CO2 Calbindin-D, calcium-binding Bovine, Bos taurus (intestinal
protein intestinal mucosa) C03 Calcitonin D,calcitonin M dimer Human, Homo sapiens (C cell tumor) C03P Calcitonin pre- Human, Homo sapiens C04 Calmodulin,phosphorylase-kinase Rabbit, Oryctolagus cuniculus
delta-subunit (skeletal muscle) COS Calmodulin Human, Homo sapiens (brain)
298 Appendices
Code Protein Source
C06 Calmodulin Scallop, Patinopecten yessoensis (adductor muscle)
C07 Carbonic anhydrase Horse, Equus cabal/us (erythrocyte)
C08 Carbonic anhydrase CI Bovine, Bos taurus (erythrocyte) C09 Carbonic anhydrase B, carbonic Human, Homo sapiens (erythrocyte)
anhydrase II CIO Carboxylesterase Pig, Sus scrofa (liver) Cll Carboxypeptidase A Bovine, Bos taurus CllP Carboxypeptidase A pro- Bovine, Bos taurus (pancreas) CI2 Carboxypeptidase Y Baker's yeast, Saccharomyces
cer",isiae CI3 Casein alpha Bovine, Bos taurus (milk) C14 Casein alpha sl B Bovine, Bos taurus (milk) CI4P Casein alpha sl pre- Bovine, Bos taurus (milk) CIS Casein beta Bovine, Bos taurus (milk) C16 Casein beta Water buffalo, Bubalus arnee
bubalis (milk) C17P Casein beta pre- Sheep, Ouis aries (milk) C18P Casein kappa pre- Sheep, Ouis aries (milk) C19 Cytochrome c Horse, Equus cabal Ius (heart
muscle) C20 Casein kappa Goat, Capra hircus (milk) C2l Casein kappa bl Bovine, Bos taurus (milk) C22 Casein kappa para- Bovine, Bos taurus (milk) C23 Cathepsin B Bovine, Bos taurus (spleen) C24 Cathepsin L Bovine, Bos taurus C2S Cathepsin H Rat, Rattus norvegicus (liver) C26 Phospholipase A2, caudoxin Horned puff adder, Bitis caudalis
(venom) C27 Cecropin Hyalophora cecropia C27S Cecropin A (1-33) Synthetic C28 Cellobiohydrolase l,4-beta glucan Trichodermo reesei QM 9414 C29 Ceruloplasmin histidine-rich Human, Homo sapiens (plasma)
fragment C30 Cholecystokinin-pancreozymin Pig, Sus scrofa (small intestine) C31 Cytochrome p4S0 cholesterol Bovine, Bos taurus (adrenal
hydroxylase cortex) C32 Chromosomal protein HMO 14 Bovine, Bos taurus (calf)(thymus) C33 Chromosomal protein HMO I Bovine, Bos taurus (calf)(thymus) C34 Chromosomal protein HMO 2 Bovine, Bos taurus (calf)(thymus) C3S Chromosomal protein HMO 17 Bovine, Bos taurus (calf)(thymus) C36 Chymotrypsin A Bovine, Bos taurus C36P Chymotrypsinogen A Bovine, Bos taurus (pancreas) C37 Chymotryptic proteinase VOP-II Hornet, Vespa orientalis (larvae) C38 Chymotryptic proteinase VCP-II Hornet, Vespa crabro (larvae) C39 Citrate synthase Pig, Sus scrofa (heart) C40A Alpha-clostripain light chain Clostridium histolyticum C40B Alpha-c1ostripain heavy chain Clostridium histolyticum C41 Clupein Y-II, protamine Y Pacific herring, Clupea pallas;;
(sperm) C42 ClupeinZ Pacific herring, Clupea pallasii
(sperm)
Appendices 299
Code Protein Source
C43 Clupein V-I, protamine YI Pacific herring, Clupea pallasii (sperm)
C44 Coagulation factor IX, Christmas Bovine, Bos taurus (plasma) factor
C4S Coagulation factor V Bovine, Bos taurus (plasma) C46 Coagulation factor VIII Bovine, Bos taurus (plasma) C47 Coagulation factor X,Stuart factor Bovine, Bos taurus (plasma) C48 Coagulation factor XI Bovine, Bos taurus (plasma) C49 Coagulation factor XII,Hageman Human, Homo sapiens (plasma)
factor,HF CSO Coagulogen American horseshoe crab, Limulus
polyphemus (amebocyte) CSOB Coagulogen B chain American horseshoe crab, Limulus
polyphemus (amebocyte) CSIB Colicin E3 subunit protein B Escherichia coli CS2 CoJipase II Pig, Sus scrofa CS3 Collagen I (gelatin) Bovine, Bos taurus (calf) C53A Collagen I alpha-l Bovine, Bos taurus (calf skin) CS3B Collagen I alpha-2 Bovine, Bos taurus (calf skin) CS3C Collagen I alpha-l cornea Bovine, Bos taurus (cornea) CS3P Collagen I pro- Bovine, Bos taurus (calf skin) CS4A Collagen I alpha-l Chicken, Gallus gallus (skin) CS4B Collagen I alpha-2 Chicken, Gallus gallus (skin) CS4P Collagen I pro- Chicken, Gallus gallus (embryo,
tendon) CSSA Collagen I alpha-l Human, Homo sapiens CS6A Collagen I alpha-l Rat, Rattus norvegicus (skin) CS7A Collagen I alpha-I,2 Guinea Pig, Cavia porcellus (skin) CS8A Collagen II alpha-l Bovine, Bos taurus (nasal septa
cartilage) CS9 Collagen III alpha-l Human, Homo sapiens (liver,dermis) C60P Collagen III pro- Bovine, Bos taurus (calf skin) C61 Collagen IV, basement membrane Human, Homo sapiens (basal
collagen membrane) C62 Collagen IV, basement membrane Bovine, Bos taurus (basal
collagen membrane) C63 Collagen intima Human, Homo sapiens (placenta) C64 Collagenolytic proteinase Fiddler crab, Uea pugilator C6SA Complement Clq subcomponent A Human, Homo sapiens (plasma) C65B Complement Clq subcomponent B Human, Homo sapiens (plasma) C6SC Complement Clq subcomponent C Human, Homo sapiens (plasma) C66 Complement Clr Human, Homo sapiens (plasma) C67 Complement C3 Human, Homo sapiens (plasma) C67A Complement C3a anaphylatoxin Human, Homo sapiens (plasma) C68 Complement factor B fragment Bb Human, Homo sapiens (plasma) C69 Crambin Crambe abyssinica (seed) C70A Crystallin alpha-A2-chain Kangoroo, Macropus rufUS (eye
lens) C7lA Crystallin alpha-A2-chain Bovine, Bos taurus (eye lens) C7lB Crystallin alpha-B2-chain Bovine, Bos taurus (eye lens) C7lC Crystallin gamma II Bovine, Bos taurus (eye lens) cn Protein kinase cAMP-dependent type Bovine, Bos taurus (cardiac
II catalytic subunit muscle)
300 Appendices
Code Protein Source
C73 Cytochrome bS Rabbit, Oryctolagus cuniculus (liver)
C74 Cytochrome c Wheat, Triticum aestivum C7S Cytochrome c DOgfISh, Squalus sucklii (heart) C76 Cytochrome c Bovine, Bos taurus (heart) C77 Cytochrome c Eastern gray kangaroo, Macropus
giganteus, Macropus kanguru C78 Cytochrome c Human, Homo sapiens (heart) C79 Cytochrome c Candida krusei C80 Cytochrome c-SS3 Petalonia fascia CSI Cytochrome c Yeast, Hansenula anomala C82 Cytochrome cl heme-not-containing Bovine, Bos taurus (heart)
ll-kDa protein C83 Cytochrome c2 Rhodospirillum rubrum C84 Cytochrome c oxidase polypeptide Bovine, Bos taurus (heart)
VIa C8S Cytochrome p-4S0-CAM Pseudomonas putida C86 Cytochrome p-4S0-CAM monoxygenase Pseudomonas putida C87 Calcitonin M,calcitonin D-monomer Human, Homo sapiens (C cell tumor) C88 Cathepsin B Rat, Rattus norvegicus (liver) C89 Collagenase Human, Homo sapiens (fibroblast) C89P Collagenase prepro- Human, Homo sapiens (fibroblast) C90A Complement C3a anaphylatoxin Mouse, Mus musculus (plasma) C90B Complement C3b Mouse, Mus musculus (plasma) C91A Complement C3a anaphylatoxin Pig, Sus serofa (plasma) C92A Complement C3a anaphylatoxin Rat, Rattus norvegicus (plasma) C93 Complement C4 Human, Homo sapiens (plasma) C94 Complement C9 Human, Homo sapiens (plasma) C9S Cowpea mosaic virus protein Cowpea mosaic virus C96 Complement CS Human, Homo sapiens (plasma) C96A Complement CSa anaphylatoxin Human, Homo sapiens (plasma) C97 Caldoxin Homed puff adder, Bitis caudalis C98 Coagulation factor X, Stuart factor Human, Homo sapiens (plasma) C99A Crystallin alpha A-chain North american Virginia opossum,
Didelphis marsupialis (lens) CAO Carbonic anhydrase C Human, Homo sapiens (erythrocyte) CAl Coagulogen Japanese horseshoe crab,Tachy-
pleus tridentatus (amebocyte) CA2 Collagen intima Bovine, Bos taurus (placenta) CA3 Coagulogen Southeast asian horseshoe crab,
Tachypleus gigas (amebocyte) CA4 Coat protein Bacteriophage MS2 CAS Calcitonin Salmon, Salmo CA6 Calcitonin Eel CA7P Coagulation factor XIII Human, Homo sapiens (plasma) CA8 Cardiotoxin 12B Haemachatus haemachutus (venom) CA9P Collagen II pro- Chicken, Gallus gallus (embryo,
sternal cartilage) CBO Chromosomal protein HMb Archaebacterium Methanosarcina
barkeri (strain DSM800) CBl Cathepsin L Chicken, Gallus gallus (liver) CB2 Cytochrome c-SSO Aquaspirillum itersonii
Appendices 301
Code Protein Source
CB3 Cholinesterase, Human, Homo sapiens (plasma) pseudocholinesterase
CB4 Cytochrome c2 Rhodopseudomonas globiformis. Rhodopila globiformis
CBS Cystatin African puff adder, Bitis arietans (venom)
CB6 Cytochrome c-SS4(S48) Paracoccus sp. IAM203 CB7 Conalbumin pre- Chicken, Gallus gal/us (egg white) CB8P Chymotrypsinogen 2 pre- Dog, Canis fami/iaris (pancreas) CB9P Carboxypeptidase A pre- Dog, Canis familiaris (pancreas) CCO Cytotoxin I Thailand cobra, Naja naja
siamensis (venom) CCI Cytotoxin II Thailand cobra, Naja naja
siamensis (venom) CC2 Cytotoxin III Thailand cobra, Naja naja
siamensis (venom) CC3 Cytotoxin IV Thailand cobra, Naja naja
siamensis (venom) CC4 Coat protein Bacteriophage ZR CCS Cytochrome oxidase Paracoccus denitriflcans CC6 Calbindin-D, calcium-binding Chicken, Gallus gal/us (intestine)
protein intestinal CC7 Cytochrome c' Paracoccus sp. IAM203 CC8 Calmodulin-binding protein, protein Bovine, Bos taurus (brain
P-S7 membrane) CC9 Cytochrome c peroxidase Pseudomonas aeruginosa COO Carbonic anhydrase VI Sheep, Ovis aries (saliva) CDI Cathepsin L Chicken, Gallus gal/us (liver
lysozomes) CD2 Carboxypeptidase I Barley, Hordeum sativum (malt) CD3P Collagenase prepro- Rabbit, Oryctolagus cuniculus
(synovial cells) CD4 Carboxypeptidase II Wheat, Triticum aestivum (bran) CDS Cytochrome c Baker's yeast, Saccharomyces
oViformis CD6 Collagen IV, basement membrane Mouse, Mus musculus (tumor)
collagen CD7 Collagen II alpha-l Human, Homo sapiens (cartilage) CDS Casein alpha sl Goat, Capra hircus (milk) CD9 Crotalus atrox metalloendopeptidase Western diamondback rattlesnake,
alpha, hemorrhag.toxin Ht-d Crotalus atrox (venom) CEI Complement C3a anaphylatoxin Guinea pig, Cavia porcel/us
(plasma) CE2 Collagenase Hypoderma Iineatum CE3 Collagenase Vibrio a/gino/yticus chemovar
iophagus. Achromobacter iophagus CE4 Complement CIs Human, Homo sapiens (plasma) CES Complement C2 Human, Homo sapiens (plasma) CE6 Casein beta Human, Homo sapiens (milk) CE7 Coagulation factor IX, Christmas Pig, Sus scrofa (plasma)
factor
302 Appendices
Code Protein Source
DOO Desmin Chicken, Gallus gallus (gizzard intermediate filaments)
DOl Dna-binding protein HTa histone--like
D02 Dihydrofolate reductase Escherichia coli D03 Dihydrofolate reductase Bovine, Bos taurus (liver) D04 Diphosphoglycerate mutase Human, Homo sapiens (erythrocyte) DOS Delta-sleep inducing peptide D06 DNA-binding protein plO Feline leukemia virus Ri strain D07 Dihydrofolate reductase Lactobacillus casei (amethopterin
resistant strain)
EOO Elastin Bovine, Bos taurus (lung) EOI Elongation factor I alpha-chain Art emia salina (cysts) E02 Elongation factor G Escherichia coli E03 Elongation factor Tu Escherichia coli E04 Encephalomyocarditis virus protein Encephalomyocarditis picornavirus EOS Endolysin lambda Bacteriophage lambda E06 Enolase Baker's yeast, Saccharomyces
cerevisiae E07P Elastase pre- Dog, Canis/amiliaris (pancreas) E09 Egg-specific protein Bombyx mori (egg) EIO Elastase inhibitor Horse, Equus cabalus (leukocyte,
cytosol) Ell Enolase Chicken, Gallus gallus (skeletal
muscle) El2 Erabutoxin b Snake (venom) El3 Endorphin alpha Synthetic El4 Epstein-Barr virus membrane antigen Escherichia coli (strain AMAI004)
-galactosidase recomb.fusion EIS Elastase leukocyte, elastase Human, Homo sapiens (neutrophil)
neutrophil
FOO Fatty acid synthase Rabbit, Oryctolagus cuniculus (mammary gland)
FOI Fatty acid synthase Cephalosporium caerulens F02 Ferredoxin I Spinach, Spinacea oleracea F03 Ferredoxin Blue-green alga, Aphanothece
halophitica F04 Ferredoxin Clostridium pasteurianum FOS Ferredoxin Chlorog/oeopsis /ritschii F06 Ferredoxin Parsley, Petroserinum sativum F07 Ferredoxin Yellow-green alga, Bwnilleriopsis
jili/ormis F08 Ferredoxin Alfalfa, Medicago sativa var.
sonora F09 Ferredoxin 4Fe-4S Clostridium thermoaceticum FIOA Fibrinogen alpha-chain pre- Human, Homo sapiens (plasma) FIOB Fibrinogen beta-chain pre- Human, Homo sapiens (plasma) FlOC Fibrinogen gamma-B-chain Human, Homo sapiens (plasma) Fll Fibrinogen Bovine, Bos taurus (plasma) Fl3 Flagellin Bacillus subtilis 168 Fl4 Fibronectin Bovine, Bos taurus (plasma)
Appendices 303
Code Protein Source
F15 Fibronectin Human, Homo sapiens (plasma) F16 Fimbrial protein CFAI Escherichia coli (enterotoxigenic
strain H-I0407) F17 Fimbrial protein K88, K88 antigen Escherichia coli FI8 Folate-binding protein Bovine, Bos taurus (milk) FI9 Fructose-bisphosphatase Rabbit, Oryctolagus cuniculus
(liver) F20 Fructose-bisphosphatase Sheep, Ovis aries (liver) F21 Flavocytochrome b2, lactate Baker's yeast, Saccharomyces
dehydrogenase cerevisiae F22 Fulvocin c Myxococcus fulvus F23 Ferredoxin Blue-green alga, Aphanothece
sacrum F24 Ferredoxin Blue-green alga, Synechocystis
6714 F25 Ferredoxin Taro F26 Ferredoxin Scudemus F27 Flavocytochrome b5,lactate Hansenula anomala
dehydrogenase F28 Fibroblast growth factor acidic, Bovine, Bos taurus (brain)
aFGF F29 Ferredoxin Green alga, Scenedesmus F30 Fatty acid synthase Chicken, Gallus gallus (liver) F31 Ferredoxin I Rice, Oryza sativa japonica
(leaves) F32 Ferredoxin Alga, Cyanidium caldarium 1355/1 F33 Ferredoxin Alga, Cyanidium caldarium RK-l
GOO Galactose-binding protein Escherichia coli BjR GOI Beta-galactosidase Escherichia coli GOIM Beta-galactosidase Escherichia coli (mutant M15) G02 Gamma-trace protein Human, Homo sapiens (urine) G03P Gastricsin pro- Human, Homo sapiens G04 Gene-G spike protein Bacteriophage FiX174 G05 Osteocalcin,Gla protein Bovine, Bos taurus (bone) G06 Osteocalcin vitamin K-dependent, Human, Homo sapiens (bone)
gamma-carboxyGlu-cont.protein G07 Alpharglobulin Human, Homo sapiens (plasma) G08 Alpharglobulin Rat, Rattus norvegicus (liver) G09 Glutamic-oxaloacetic transaminase, Rat, Rattus norvegicus (liver)
Asp-oxoGlu-aminotransferase GIO Glucagon Pig, Sus scrofa Gil Glucagon Bovine, Bos taurus GI2 Glucoamylase G I Aspergillus niger GI3 Glucose dehydrogenase Bacillus megaterium GI4 Glutamate dehydrogenase Bovine, Bos taurus (liver) GI5 Glutamate dehydrogenase Neurospora crassa
NADP-specific G16 Glutamine synthetase Escherichia coli GI7 Glutaredoxin Escherichia coli Gl8 Glyceraldehyde 3-phosphate Human, Homo sapiens (muscle)
dehydrogenase GI9 Glycophorin Dog, Canis familiaris (erythrocyte)
304 Appendices
Code Protein Source
G20 Glycophorin Human, Homo sapiens (erythrocyte membrane)
G21 Glycoprotein VSG 117, variant Trypanosoma brucei surface glycoprotein 117
G22 Gastrin-releasing peptide Human, Homo sapiens G23 Glutathion transferase 4-4 D class Rat, Rattus norvegicus (liver,
Mu cytosol) G24 Glutaminase-asparaginase Acinetobacter glutaminasificans G2S Gastrin-releasing peptide 10 Pig, Sus serofa (stomach wall) G26 Gag protein Immunodeficiency virus, HIV
(human) G27 Glycoprotein Ib, GPIb, glycocalicin Human, Homo sapiens (platelet
fragment membrane) G28 Glutamate dehydrogenase Chicken, Gal/us gal/us (liver) G29 Glycoprotein e2 Coronavirus MHV-AS9
HOO Haptoglobin 1-1 Human, Homo sapiens (plasma) HOOA Haptoglobin 1-1 alpha-chain Human, Homo sapiens (plasma) HOOB Haptoglobin I-I beta-chain Human, Homo sapiens (plasma) HOI Hemerythrin Goljingia gouldii. Phascolopsis
gouldii H02A Hemoglobin alpha-chain Musk shrew, Suncus murinus
(erythrocyte) H02B Hemoglobin beta-chain Musk shrew, Suncus murinus
(erythrocyte) H03A Hemoglobin alpha-chain Human, Homo sapiens (erythrocyte) H03B Hemoglobin beta-chain Human, Homo sapiens (erythrocyte) H03C Hemoglobin embryo gamma-chain Human, Homo sapiens (fetal
erythrocyte) H03Z Hemoglobin embryo zeta-chain Human, Homo sapiens (fetal
erythrocyte) H04 Hemoglobin Western greylag, Goose, Anser
anser (erythrocyte) H04A Hemoglobin alpha-chain Goose, Anser anser (erythrocyte) H04B Hemoglobin beta-chain Goose, Anser anser (erythrocyte) HOSB Hemoglobin M embryo beta-like ch., Chicken, Gal/us gal/us (fetal
hemoglobin E embryo epsilon erythrocyte) H06 Hemoglobin 12-kDa subunit Polychaete. Ty"hynchus
heterochaetus (extracellular) H07A Hemoglobin alpha-chain Rabbit, Oryctolagus cuniculus
(erythrocyte) H07B Hemoglobin beta-chain Rabbit, Oryctolagus cuniculus
(erythrocyte) H08 High potential iron-sulfur protein 11riocapsa pfennigii H09 Histidinol dehydrogenase Salmonella typhimurium HIO Histocompatibility antigen H-2D Mouse, Mus musculus H11 Histocompatibility antigen H-2K Mouse, Mus musculus (tumor) Hl2 Histocompatibility antigen HLA-B40 Human, Homo sapiens Hl3 Histone AL,histone Arg-Lys-rich, Bovine, Bos turus (calf thymus)
histone F2a2,histone IIBI H14 Histone H2A Cuttlefish, Sepia officinalis HIS Histone H2A Starfish, Asterias ruhens (gonad
chromatin)
Appendices 305
Code Protein Source
Hl6 Histone H2A Sea worm, Sipunculus nudus Hl7 Histone H2B Chicken, Gallus gallus
(erythrocyte) Hl8 Histone HS Chicken, Gallus gallus Hl9 Histone I Rat, Rattus norvegicus H2O Histone III Carp, Letiopus bubalus H21 Histone III N-Pro,histone f2b Bovine, Bos taurus (calf thymus) H22 Histone III Pea, Pisum sativum H23 Histone H4 Pea, Pisum sativum (seedling) H24 Histone IV,histone Gly-Arg-rich Bovine, Bos taurus (calf thymus) H2S Hemerythrin Dendrostomum pyroides H26 Corticotropin, adrenocorticotropic Pig, Sus seroJa
hormone, ACTH H27 Corticotropin, adrenocorticotropic Bovine, Bos taurus
hormone, ACTH H28A F ollitropin, follicle stimulating Human, Homo sapiens (pituitary)
hormone, FSH alpha H29B Follitropin, follicle stimulating Sheep, Ovis aries (pituitary)
hormone, FSH beta H30A Choriogonadotropin alpha-subunit, Human, Homo sapiens (placenta)
HCG alpha-subunit pre-H30B Choriogonadotropin beta-subunit, Human, Homo sapiens (placenta)
HCG beta-subunit pre-H31 Somatotropin, growth hormone Horse, Equus caballus H32 Somatotropin, growth hormone, HGH Human, Homo sapiens (pituitary) H32P Somatotropin pre-, growth hormone Human, Homo sapiens (pituitary)
pre-, HGH pre-H33 Somatotropin, growth hormone Bovine, Bos taurus (anterior
pituitary) H34 Somatotropin, growth hormone Sheep, Ovis aries (pituitary) H3SA Interstitial cell stimulating Human, Homo sapiens (pituitary)
hormone alpha-subunit,ICSH alpha H36 Prolactin, LTH Sheep, Ovis aries (pituitary) H37 Prolactin, LTH Pig, Sus scroJa (pituitary) H38 Prolactin, LTH Bovine, Bos taurus (pituitary) H40B Lipotropin, lipotropic hormone, Pig, Sus scroJa
LPH beta H4lB Lipotropin, lipotropic hormone, Sheep, Ovis aries (anterior
LPHbeta pituitary) H43B Lutropin, luteinizing hormone, Human, Homo sapiens (pituitary)
LH beta H44B Lutropin, luteinizing hormone, Bovine, Bos taurus
LH beta H4SB Lutropin, luteinizing hormone, Pig, Sus scroJa
LH beta H46 Luteinizing-hormone-releasing Bovine, Bos taurus (pituitary)
hormone, LH-RH, LRH, luliberin H47 Melanocyte stimulating hormone beta Pig, Sus seroJa H48 Somatotropin, growth hormone Seiwhale, Balaeonoptera borealis
(pituitary) H49 Somatomammotropin chorionic, Human, Homo sapiens (placenta)
lactogen, HPL, HCS
306 Appendices
Code Protein Source
H49P Somatomammotropin chorionic pre-. Human. Homo sapiens (placenta) HPL pre-
HSOA Thyrotropin.thyroid stimulating Bovine. Bos taurus hormone.TSH alpha
HSOB Thyrotropin. thyroid stimulating hormone. TSH beta
HSI Parathyroid hormone. PTH Human. Homo sapiens HS2B Thyrotropin. thyroid stimulating Human. Homo sapiens (pituitary)
hormone. TSH beta HS3 Hydroxybenzoate hydroxylase I'seudOmonasj7uorescens HS4P Somatotropin pre-. growth hormone Rat. Rattus norvegicus (pituitary
pre- cells strain GC) HS6P Parathyroid hormone. PTH prepro- Bovine. Bos taurus (parathyroid
gland) HS7 Melanotropin (pituitary) HS8 Parathyroid hormone. PTH Pig. Sus scrola (thyroid) HS9P Prolactin, LTH pre- Rat, Rattus norvegicus (pituitary) H60 Somatostatin-28 Synthetic H6lB Hemoglobin beta-chain Rainbow trout, Salmo irideus H6lP Thyrotropin. thyroid stimulating Mouse. Mus musculus (anterior
hormone. TSH alpha pre- pituitary) H62 Histocompatibility antigen H-2 Mouse. Mus musculus
class H63 Corticotropin. adrenocorticotropic Sheep. Ollis aries
hormone. ACTH H64 Choriogonadotropin beta-subunit. Human. Homo sapiens (placenta)
HCG beta subunit H64P Choriogonadotropin beta-subunit Human. Homo sapiens (placenta)
pre-H6S Histone H3 Cycad. Encepalarthos altensteinii
(pollen) H66A Hemoglobin alpha-chain Earthworm. Lumbricus terrestris
(extracellular) H66B Hemoglobin beta-chain Earthworm. Lumbricus terrestris
(extracellular) H66C Hemoglobin c-chain Earthworm. Lumbricus terrestris
(extracellular) H67A Lutropin. luteinizing hormone alpha Sheep. Ovis aries
-subunit H67B Lutropin. luteinizing hormone beta Sheep. Ovis aries
-subunit H68 Hemoglobin Oligochaete. Lumbricus terrestris
(extracellular) H69 Histone Hlb Human, Homo sapiens (spleen) H70 Histone HI Protozoan. Tetrahymena pyriformis H71 Hemoglobin Carp. Cyprinus carpio
(erythrocyte) H73 Hemoglobin beta chain-linker-CII Human, Homo sapiens (erythrocyte,
fusion hybrid globin) H74 Hemoglobin Dakar alpha-chain Human. Homo sapiens (erythrocyte) H7S Histone III Bovine. Bos taurus (calf thymus) H03B Hemoglobin beta-chain Human. Homo sapiens (erythrocyte)
Appendices 307
Code Protein Source
100 Hemagglutinin Influenza A virus H2N1 Japan 101 Hemagglutinin Influenza A virus FVTB 102 Hemagglutinin A Influenza virus early Hong K.ong
var.Aichi 103 Hemagglutinin Influenza A virus FVP, Fowl plague
virus 104 Acrosin inhibitor I,II(psTI-type), Bovine, Bos taurus (seminal
acrolin inhibitor busi I 2 plasma) lOS Alpha-amylue inhibitor Wheat, Triticum aestivum 106 Alpha-amylue inhibitor 1-2 Ragi, Indian fmger millet,
Eleusine coracana (seed) 107 Alpha-amylue subtilisin inhibitor, Barley, Hordeum vulgare (seed)
BASI 108 Antiplumin alpha-2 inhibitor Human, Homo sapiens (pluma) 109 ATPase inlubitor Bovine, Bos taurus (mitochondria) 110 ATPase inhibitor Bovine, Bos taurus (mitochondria) IllA Chymotrypsin A inhibitor I A-chain Potato, Solanum tuberosum 112 Translation inhibitor II Barley, Hordeum vulgare (seed) 113 Trypsin chymotrypsin inhibitor Dog, Canis familiaris
DSI-1 (submandibular gland) 114 Protease A inhibitor Baker's yeut, Saccharomyces
cerevisiae IlS Alphal-antitrypsin-antichymotrypsin, Human, Homo lapienl (plasma)
alphal-proteinue inhibitor IlSP Alphal-antitrypsin antichymotrypsin Human, Homo sapiens (liver)
pre-116 Pancreatic secretory trypsin Human, Homo sapiens (pancreu)
inhibitor, PSTI 117 Proteue inhibitor Bowman-Birk Lima bean, Phaselus lunatus
component IV 118 Inhibitor serine proteinue II Cape Cobra, Naja nivea (venom) 119 Inhibitor bromelain type VII Pineapple, Ananas comosus (stem) 120 Subtilisin inhibitor Broad bean, Vicia faha 121 Subtilisin inhibitor Streptomyces albogriseolus 122 Trypsin inhibitor,WTI-1 Winged bean, Psophocarpus
tetragonolobus (seed) 123 Trypsin inhibitor Ascaris lumbricoides var. suum 124 Trypsin inhibitor B Black Mamba, Dendroaspis polylepis
polylepis (venom) 12S Trypsin chymotrypsin inhibitor Soybean, Glycine max
Bowmann Birk, BBI 126 Trypsin secretory inhibitor Kazal, Bovine, Bos taurus (pancreu)
PSTI 127 Trypsin inhibitor K.unitz Soybean, Glycine max 128 Trypsin inhibitor buic pancreatic, Bovine, BOl taurus (pancreu)
BPTI 129 Trypsin inhibitor buic pancreatic Human, Homo sapiens (pancreas) 130 Trypsin secretory inhibitor Pig, Sus scrofa 131 Chymotrypsin inhibitor PCI-i Potato, Solanum tuberosum 132 Trypsin chymotrypsin inhibitor BIll Peanut, Arachis hypogaea 133B Insulin B chain Carp, Letiopus bubalus, Cyprinul
carpio 134 Insulin Pig, Sus sCTofa
308 Appendices
Code Protein Source
I34B Insulin B-chain Pig, Sus scrofa I34P Insulin pro- Pig, Sus scrofa 135A Insulin A-chain Bovine, Bos taurus I35B Insulin B-chain Bovine, Bos taurus I35P Insulin pro- Bovine, Bos taurus 136 Insulin-like growth factor II Human, Homo sapiens (plasma) 137P Insulin prepro- Rat, Rattus norvegicus 138P Insulin prepro- Anglerf'lSh, Lophius americanus 139P Insulin prepro- Atlantic hagfish, Myxine glutinosa I40P Insulin prepro- Human, Homo sapiens 141A Interferon LeIFN A, LeIF A, Human, Homo sapiens (leukocyte)
IFN-alpha A 141B Interferon LelFN B Human, Homo sapiens (leukocyte) 141C Interferon LelFN C Human, Homo sapiens (leukocyte) 1410 Interferon LelFN D Human, Homo sapiens (leukocyte) 141E Interferon LelFN E Human, Homo sapiens (leukocyte) I41F Interferon LeIFN F Human, Homo sapiens (leukocyte) 141H Interferon LelFN H Human, Homo sapiens (leukocyte) 1411 Interferon lambda 2h Human, Homo sapiens (leukocyte) 14LJ Interferon lambda 2cl Human, Homo sapiens (leukocyte) 141K Interferon immune gamma Human, Homo sapiens (lymphocyte) 142 Interferon F-IF Human, Homo sapiens (fibroblast) 143 Trypsin inhibitor HHVII Ringhal's Cobra, Haemachatus
haemachates (venom) 144 Trypsin motrypsin inhibitor Dog, Canis familiaris
DSI-3 (submandibulary gland) 145 Serine proteinase inhibitor II Ringhal's cobra, Hemachatus
haemachatus (venom) 146A Iridine I-Ia Rainbow trout, Salmo irideus 146B Iridine I-Ib Rainbow trout, Salmo irideus I46C Iridine I-II Rainbow trout, Salmo irideus 147P Hemagglutinin pre- Influenza A virus H3N2 Victoria 148 ATPase inhibitor Yeast, Candida utilis (strain CBS
1516, mitochondria) 149 Serine proteinase I inhibitor Bovine, Bos taurus (spleen) ISO Nexin I, inhibitor protease nexin Human, Homo sapiens (fibroblasts)
I, PNI 151 Trypsin inhibitor Horseshoe crab, Tachypleus
tridentatus (hemocyte) 152 Trypsin inhibitor Lima bean, Phaseolus limensis 153 Insulin-like growth factor I Human, Homo sapiens (fusion
fusion protein,lGF I recomb. protein E.coli) 162 Inhibitor proteinase double-headed Badger, Meles meles (submandibular
gland) lAO Immunoglobulin G myeloma Ha lambda Human, Homo sapiens
-chain IAI Immunoglobulin Al paraprotein Sap Human, Homo sapiens IA2 Immunoglobulin A2m(I) allotype Human, Homo sapiens
paraprotein Van IDI Immunoglobulin D Wah delta-chain Human, Homo sapiens lEO Immunoglobulin E epsilon-chain Human, Homo sapiens lGOC Immunoglobulin G gamma-chain Human, Homo sapiens IGOC Immunoglobulin G gamma-chain Human, Homo sapiens
Appendices 309
Code Protein Source
IOOL Immunoglobulin G-like allot b4-VKL Human, Homo sapiens IG1 Immunoglobulin 01 myeloma Nie heavy Human, Homo sapiens (urine)
chain IG2 Immunoglobulin G myeloma Pet(x) Human, Homo sapiens (urine)
lambda-chain IG3 Immunoglobulin G myeloma Gc kappa Human, Homo sapiens (urine)
-chain IG4 Immunoglobulin G myeloma Bo kappa Human, Homo sapiens (urine)
-chain lOS Immunoglobulin G myeloma Kern Human, Homo sapiens (urine)
lambda-chain IG6 Immunoglobulin G myeloma nei lambda Human, Homo sapiens (urine)
-chain IG7 Immunoglobulin G myeloma Vor lambda Human, Homo sapiens (urine)
-chain IGS Immunoglobulin G myeloma Ta light Human, Homo sapiens (urine)
chain IG9 Immunoglobulin G myeloma Dee kappa Human, Homo sapiens (urine)
-chain IHO Immunoglobulin G myeloma Roy kappa Human, Homo sapiens (urine)
-chain IH1 Immunoglobulin G myeloma Cum kappa Human, Homo sapiens (urine)
-chain IH2 Immunoglobulin G myeloma Rad kappa Human, Homo sapiens (urine)
-chain IH3 Immunoglobulin G myeloma Fr4 kappa Human, Homo sapiens (urine)
-chain IH4 Immunoglobulin G myeloma B6 kappa Human, Homo sapiens (urine)
-chain IHS Immunoglobulin G myeloma Ag kappa Human, Homo sapiens (urine)
-chain IH6 Immunoglobulin G myeloma Sh lambda Human, Homo sapiens (urine)
-chain IHS Immunoglobulin 0 kappa-chain Pig, Sus scrofa (plasma) IMO Immunoglobulin M myeloma Mu heavy Mouse, Mus musculus (myeloma
-chain tumor MOPC 104E) IM1P Immunoglobulin anti-arsonate heavy Mouse, Mus musculus (hybridoma
-chain pre- cells 93G7) IM2A Immunoglobulin VH II-chain Mouse, Mus musculus (embryo, clone
pCh 10BA) IM2B Immunoglobulin VH II-chain Mouse, Mus musculus (embryo, clone
pCh IOSB) IM2C Immunoglobulin VH II-chain Mouse, Mus musculus (embryo, clone
pCh 104) IM2D Immunoglobulin VH II-chain Mouse, Mus musculus (embryo, clone
pCh 111) 1M3 Immunoglobulin G2a gamma heavy Mouse, Mus musculus (plasmocytoma
chain MOPC173) IM4 Immunoglobulin G anti-(azobenzene Mouse, Mus musculus
arsonate) monoc!. kappa-chain IMS Immunoglobulin G RPC20 lambda-chain Mouse, Mus musculus IM6P Immunoglobulin G anti-phosphoryl- Mouse, Mus musculus (hybridoma
cholin heavy chain pre- cells 5107)
310 Appendices
Code Protein Source
IM7 Immunoglobulin G2a Mouse, Mus musculus IM8 Immunoglobulin G heavy chain Mouse, Mus musculus IM9 Immunoglobulin M Cam kappa-chain Human, Homo sapiens (plasma) IMA Immunoglobulin M Cam mu-chain Human, Homo sapiens (plasma) 1MB Immunoglobulin M Ga lambda-chain Human, Homo sapiens (plasma) IMC Immunoglobulin Ga Mu-chain Human, Homo sapiens (plasma) IMO Immunoglobulin M Oi mu-chain Human, Homo sapiens (plasma) IME Immunoglobulin M Wollambda-chain Human, Homo sapiens (plasma) IMF Immunoglobulin M Sie lambda-chain Human, Homo sapiens (plasma) IMG Immunoglobulin G2a Mouse, Mus musculus (hybridoma
anti-azophenylarsonate A/J-BALB/c myeloma) IMH Immunoglobulin G2a anti-digoxin Mouse, Mus musculus (hybridoma
A/J-BALB/c myeloma) IP Immunoglobulin G2 heavy chain Guinea Pig, Callia
porcellus(strainI3) IRI Immunoglobulin G Ss Rabbit, Oryctolagus cuniculus IR2 Immunoglobulin G lambda-chain c Rabbit Basilea, Oryctolagus
-region cuniculus IR3L Immunoglobulin 413S anti-group C Rabbit, Oryctolagus cuniculus
streptococ.carbohydrate light c IR4 Immunoglobulin bs-S anti-type III Rabbit, Oryctolagus cuniculus
pneumococcus heavy chain (plasma)
KOO Keratin beta Silver gull, laTUS novae hollandiae (feather)
KOI Keratin alpha Sheep, Ollis aries (wool) KOIS Keratin alpha high-sulfur SCMKB Sheep, O"ts aries (mohair wool)
M 1.2 KOIT Keratin alpha Tyr-rich protein, Sheep, Ovis aries (wool)
keratin component 0.62 KOLU Keratin alpha high sulfur SCMKB 2a Sheep, Ollis aries (wool) KOIV Keratin alpha high sulfur Sheep, Ollis aries (merino wool)
SCMKB-IIIA3 KOIW Keratin alpha high sulfur SCMKB 2b, Sheep, Ollis aries (wool)
S-Cm-keratein b2 subfraction K02 Keratin beta band 3 Emu, Dromaius nOllae-hollandiae
(feather) K03 Keratin beta Chicken, Gallus gallus (feather) K04 Kininogen HMW Bovine, Bos taurus (plasma) KOS Kininogen LMW Mouse, Mus musculus (plasma) K06 Kallikrein urinary Human, Homo sapiens (urine) K07 Kininogen HMW Horse, Equus cabal/us (plasma)
LOO Repressor lac Escherichia coli LOI Lactalbumin alpha Rat, Rattus norvegicus (milk) L02 Lactalbumin alpha Bovine, Bos taurus (milk) L03 Lactalbumin alpha Horse, Equus cabal/us (milk) L04 Lactalbumin alpha Human, Homo sapiens (milk) LOS Lactalbumin alpha Guinea Pig, Cavia porcellus (milk) L06P Lactalbumin alpha Rabbit, Oryctolagus cuniculus
(milk) L07 Leghemoglobin component I Pea, Pisum sativum (root nodules)
Appendices 311
Code Protein Source
LOS Lactate dehydrogenase M4 Dogfish, Squalus acanthius (muscle)
L09 Lactate dehydrogenase Lactobacillus casei LIO Lactate dehydrogenase Pig, Sus scrofa (heart) Lil Lactate dehydrogenase, lactate:NAD Bacil/us stearothermophilus
oxidoreductase LI2 Laminin Human, Homo sapiens (tumor) L13P Lactoglobulin beta pre- Bovine, Bos taurus (milk) Ll4 Concanavalin A lectin Jack bean, Canavalia ensiformis
(root nodules) LlSB Favin lectin beta-chain Broad bean, Vicia faba (root
nodules) LI6 Lectin hepatic-cell membrane Chicken, Gal/us gal/us (hepatocyte
cell membrane) L17A Lectin lathyrus alpha I-chain Lathyrus ochrus (root nodules) LI7B Lectin lathyrus alpha 2-chain Lathyrus ochrus (root nodules) LISA Lectin lentil alpha-chain Lentil, Lens culinaris (root
nodules) LI8B Lectin lentil beta-chain Lentil, Lens culinaris (root
nodules) Ll9 Leghemoglobin A Kidney bean, French bean,
Phaseolus vulgaris (root nodules) L20 Legumin alpha M Pea, Pisum sativum L2I Leucine-specific binding protein Escherichia coli (periplasmic) L22 Leucine aminopeptidase Bovine, Bos taurus (lens) L23M Protein Pl2 MMuLV Moloney murine leukemia retrovirus L23R Protein Pl2 RMuLV Rauscher murine leukemia
retrovirus L24 Leukotriene 04 Synthetic L2S Lipase Pig, Sus scrofa (pancreas) L26 Lipophilin,proteolipid apoprotein Bovine, Bos taurus (brain) L27 Apolipoprotein A-I,apo-A-I Dog, Canis familiaris (serum,high
density lipoproteins) L28 Lipoprotein Braun, BLP Escherichia coli (outer membrane) L28P Lipoprotein Braun pro-, pro-BLP Escherichia coli (outer membrane) L29P Apolipoprotein VLDL II pre- Chicken, Gal/us gal/us L30 Lysine-rich protein Barley, Hordeum vulgare (seed) L31 Lysozyme Chicken, Gallus gallus (egg white) L32 Lysozyme Chalaropsis sp. L33 Lysozyme Bacteriophage T4 L34 Lysozyme Human, Homo sapiens (milk) L3S Lectin lathyrus sphaericus Lathyrus sphaericus Retz (root
nodules) L37 Protein plO RMuLV Rauscher murine leukemia
retrovirus L38 Lipase Rat, Rattus norvegicus (liver) L39 Litorin L40 Leghemoglobin II Sesbania rostrata (stem nodules) L41 Lipoate acetyltransferase E2 Rat, Rattus norvegicus (heart)
MOO Alpharmacroglobulin Human, Homo sapiens (plasma) MOIP Maltose-binding protein pre- Escherichia coli (periplasmic) M02 Melittin Bee, Apis mellifera (venom)
312 Appendices
Code Protein Source
M02P Melittin prepro- Bee, Apis mellifera (venom) M03 Metallothionein Ib Horse, EqlllU caballus (renal
cortex) M04 Metallothionein I1,thionein-II Mouse, Mus muscu/us (liver) MOS Methylamine dehydrogenase Pseudomonas AM I MOSA Methylamine dehydrogenase light Pseudomonas AMI
subunit M06A Microglobulin alpha 1 Human, Homo sapiens (urine) M06B Microglobulin beta 2 Human, Homo sapiens M07B Microglobulin beta 2 Bovine, Bos taurus MOS MoFe protein Clostridium pasteurianum M09A Monellin a-chain Serendipity berry,
Dioscoreophyllum cuminsii M09B Monellin b-chain Serendipity berry,
Dioscoreophyllum cuminsii MIO Motilin Pig, SussCTo/a (small intestine
mucosa) Mll Murein lipoprotein Escherichia coli B (cell wall) MI2 Myelin protein Al Bovine, Bos taurus MI3 Myelin protein basic,myelin Bovine, Bos taurus (brain)
protein Al MI4 Myelin protein basic,myelin Human, Homo Illpiens (brain)
protein al MIS Myelin P2 protein Human, Homo sapiens (spinal roots) MI6 Myelin P2 protein Rabbit, Oryctolagus cuniculus
(nerve) MI7 Myelin P2 protein Bovine, Bos taurus (spinal roots) MIS Myelin protein S Rat, Rat'"' norvegicus (brain) M19 Myelin proteolipid protein Rat, Rattus norvegicus (brain) M20 Gag protein PIS Myeloblastosis virus M21 Myoglobin Gummy shark, Mustelus ontorticus M22 Myoglobin Humpback whale, Megaptera novae
angliae M23 Myoglobin Horse, Equus caballus (heart) M24 Myoglobin Alligator, Alligator
mississippiensis M2S Myoglobin Chicken, Gallus gallus (heart) M26 Myoglobin Sperm whale, Physeter catodon M27 Myoglobin Dolphin, Delphinus delphis M2S Myoglobin Map turtle, Graptemys geographica M29 Myoglobin Eurasian badger, Meles meles M30 Myosin alkali light chain I, myosin Rabbit, Oryctolagus cuniculus
AI, myosin LCI (skeletal muscle) M3l Myosin light chain lol Chicken, Gallus gallus (cardiac
muscle) M3IA Myosin AI, Myosin alkali light chain I, Chicken, Gallus gallus
myosin LCI M3lB Myosin A2, Myosin alkali light chain 2, Chicken, Gallus gallus
myosin LC3 M32 Myoglobin Southern American Pika, Ochotona
princeps M33 Myoglobin Shark, Heterodontus portusjacksoni
Appendices 313
Code Protein Source
M34A Myosin light chain L-2A Chicken, Gallus gal/us (cardiac muscle)
M34B Myosin light chain L-2B Chicken, Gal/us gal/us (cardiac muscle)
M3S Myosin light chain L-l Chicken, Gal/us gal/us (fast skeletal muscle)
M36 Myosin light chain 17 kDa Chicken, Gal/us gal/us (gizzard muscle)
M36C Myosin heavy chain Chicken, Gal/us gal/us (gizzard muscle)
M37 Melittin Bee, Apis serana (venom) M38 Melittin Bee, Apisflorea (venom) M39 Myosin ii heavy chain Dictyostelium discoideum M40 Myoglobin Shark, Heterodontus japonicus
(muscle) M41 Muscle protein SM22 alpha Chicken, Gal/us gal/us (gizzard
smooth muscle) M42 Malate dehydrogenase Rat, Rattus norvegicus (heart
mitochondria) M43 Melanocyte stimulating hormone
alpha M44 Mucor pusillus aspartic proteinase, Mucor pusil/us (fungus,
MPP extracellular) M45 Myoglobin Macacus rhesus (muscle) M46 Myoglobin Dolphin (muscle)
NOO Cytochrome b5 reductase NADH Bovine, Bos taurus (calf liver) NOI Nadh dehydrogenase subunit II Bovine, Bos taurus (heart
mitochondria) N02 Neocarzinostatin,NCS Streptomyces carzinostaticus N03B Nerve growth factor, NGF Mouse, Mus musculus N03C Nerve growth factor gamma subunit Mouse, Mus musculus (submaxillar) N04 Neoendorphin alpha-Arg-Phe-Ala-nh2 Synthetic NOS Endorphin beta Human, Homo sapiens N06A Dynorphin a Synthetic N06B Dynorphin b Synthetic N07P Enkephalin prepro- Human, Homo sapiens N08P Enkephalin A pre pro- Bovine, Bos taurus (adrenal
medulla chromaffin) N09P Enkephalin-Leu pro- Bovine, Bos taurus NIOP Enkephalin-Met pro- Bovine, Bos taurus Nl2P Opiomelanocortin pro-, POMC Toad, Xenopus /aevis
(neurointermediate lobe) NI3 Head-activator neuropeptide Rat, Rattus norvegicus (intestine) Nl4 Substance P neuropeptide, SP Rat, Rattus norvegicus Nl5 Substance P neuropeptide, SP Bovine, Bos taurus (brain) Nl6 Neuropeptide Y Pig, Sus scrofa (brain) Nl7 Neurophysin MSEL, neurophysin I Pig, Sus scrofa (posterior
pituitary) Nl8 Neurophysin MSEL, neurophysin II Bovine, Bos taurus (posterior
pituitary) Nl9 Neurophysin MSEL, neurophysin III Sheep, Ovis aries (posterior
pituitary)
314 Appendices
Code Protein Source
N20 Neurophysin VLDV Horse, Equus caballus N21 Neurotensin Synthetic N22 Nitrogenase Fe-protein Azotobacter vinelandii N23 Hemolytic protein 12B African Ringhal's cobra,
non-neurotoxic Haemachatus haemachatus (venom) N24 Nuclease Staphylococcus aureus V8 N2S Neurophysin MSEL Horse, Equus caballus N26 Neurophysin MSEL Rat, Rattus norvegicus N27 Neurophysin VLDV Rat, Rattus norvegicus N28 Enkephalin-Leu(Arg6,Arg7) Synthetic N29A Neoendorphin alpha Synthetic N29B Neoendorphin beta Synthetic N31 Precursor AVP-NpII, vasopressin Bovine, Bos taurus (hypothalamus)
Arg-neurophysin II precursor N32 Neurophysin MSEL Frog, Rana esculenta (posterior
pituitary) N33 Neurophysin VLDV Pig, Sus scrola (posterior
pituitary) N34 Neurophysin VLDV Bovine, Bos taurus (posterior
pituitary) N3SP Neurophysin MSEL-copeptin, pro- Guinea pig, Cavia porcellus N36 Neuromedin N Synthetic N37 PH-8P neuropeptide Pig, Sus scrola (hypothalamus)
POO Papain Papaya, Carica papaya POI Proline-rich protein E Human, Homo sapiens (saliva) P02 Parvalbumin beta Hake, Merlucius merlucius (muscle) P03 Parvalbumin Rabbit, Oryctolagus cuniculus
(muscle) P04 Parvalbumin II Pike, Esox lucius POS Parvalbumin III Pike, Esox lucius P06 Penicillinase Staphylococcus aureus P07 Penicillopepsin Penicillium nota tum P08 Pepsin A Pig, Sus scrola P09 Pepsinogen Chicken, Gallus gallus PIO Peptidoglycan Staphylococcus aureus strain
Copenhagen (cell wall) Pll Peroxidase 7,TP7 Turnip, Brassica napus (root) Pl2 Coat protein Bacteriophage PP7 (Ps.aeruginosa) PI3 Coat protein Bacteriophage Q-beta PI4 Coat protein Bacteriophage filamentous Ike PIS Coat protein Bacteriophage filamentous If2 PI6 Coat protein Bacteriophage filamentous f2 PI7 DNA-binding protein II Clostridium pasteurianum PI8 DNA-binding protein HRm Rhizobium meliloti strain 20 II PI9P DNA-binding protein pre-, protein Filamentous bacteriophage fd gene
Sp pre- V P20 DNA-binding protein pl2,BLV pl2 Bovine leukemia virus P21 DNA-binding protein Filamentous bacteriophage f1 P22 DNA-binding protein,DNA helix Bacteriophage T4 gene 32
destabilizing protein P23 DNA-binding protein gene 32 Bacteriophage T 4 P24 Capsid protein, coat protein Bacteriophage fr
Appendices 315
Code Protein Source
P2S Capsid head precursor I. internal Bacteriophage T4 protein I. IPI
P26P DNA-binding protein pre- Filamentous bacteriophage fd gene IV
P27P Capsid protein major pre-. coat Bacteriophage filamentous fd protein major pre-
P28 Capsid protein minor. coat protein Bacteriophage filamentous fd gene minor VIII
P29P Capsid protein pro-. coat protein Bacteriophage M 13 pro-
P30 Small core protein.SCP Bacteriophage PhiX 174 P31 Phosphatase alkaline Escherichia coli P32 Phosphocholin transfer protein. Bovine. Bos taurus (liver)
phosphatidylcholine exch.protein P33 Phospholipase A2 homolog II-I Tiger snake. Notechis scutatus
scutatus (venom) P34 Phosphofructokinase 6-. Badllus stearothermophilus
phosphohexokinase P3S Phosphoglycerate-3-kinase Horse. Equus caballus (muscle) P36 Phosphoglycerate-3-kinase Human. Homo sapiens P37 Phycocyanin C Mastigocladus laminosus P38 Phosphoglycerate mutase Baker's yeast. Saccharomyces
cerevisiae P39 Phospholipase A Gabbon adder. Bitis gabonica
(venom) P40 Phospholipase A2 Bee. Apis mellifera (venom) P41 Phospholipase A Pig. Sus scrola (pancreas) P42 Phospholipase A Bungarus multicinctus (venom) P43 Phospholipase A DE-ll Forest cobra. Naja melanoleuca
(venom) P44 Phospholipase A DE-lla Forest cobra. Naja melanoleuca
(venom) P4S Phospholipase A2 Human. Homo sapiens (pancreas) P46 Phospholipase A2 Horse. Equus caballus (pancreas) P47 Glycopeptide Sheep. Ovis aries (pituitary) P48 Phosphorylase B kinase gamma Rabbit. Oryctolagus cuniculus
-subunit (skeletal muscle) P49 GTP:AMP phosphotransferase.nucleo- Bovine. Bos taurus (heart)
sidetriphosp.adenylate kinase,AIO PSOA Phycocyanin alpha Cyanidum caldarium PSOB Phycocyanin beta Cyanidum caldartum PSIA Phycoerythrocyanin alpha-subunit Mastigoc/adus laminosus PSIB Phycoerythrocyanin beta-subunit Mastigocladus laminosus PS2 Pilin Bacteroides nodosus (strain 198) PS3 Pilin Pseudomonas aeruginosa PAK PS4 Glycopeptide Pig. Sus scrola (posterior
pituitary) PSS Posterior pituitary peptide Bovine. Bos taurus (posterior
pituitary) PS6 Ovalbumin Quail. Coturnix coturnixjaponica
(egg white) PS7A Plasmin light chain A Human. Homo sapiens (plasma) PS7B Plasmin heavy chain B Human. Homo sapiens
316 Appendices
Code Protein Source
P57P Plasminogen Human, Homo sapiens (plasma) P58 Seminalplasmin Bovine, Bos taurus (semen) P59 Plasminogen activator light chain, Human, Homo sapiens (urine)
urokinase light chain P60 Plastocyanin Green algae, Chlorella /usca P6l Plastocyanin Broad bean, Vicia/aba P62 Plastocyanin European elder, Sambucus nigra P63 Plastocyanin Kidney bean, French bean,
Phaseolus vulgaris P64 Plastocyanin Potato, Solanum tuberosum P65 Replication protein Poliovirus P66 Porin, major outer membrane protein Escherichia coli BIR
I, OMPF protein P67P Proclotting enzyme activator Horseshoe crab, Limulus polyphemus P69 Proline-rich protein F Human, Homo sapiens (saliva) P70 Proline-rich protein C Human, Homo sapiens (saliva) P71 Proline-rich polypeptide Sheep, Ovts aries (colostrum) P72 Proline-rich protein SAPI Human, Homo sapiens (saliva) P73P Prostatic protein pre- Rat, Rattus norvegicus P74 Protamine I Northern pike, Esox lucius P75 Protein C Bovine, Bos taurus (plasma) P76 Phospholipase A DE-I Forest cobra, Naja melanoleuca
(venom) P77 Protokatechuate-3,4-dioxygenase Pseudomonas aeruginosa P78 Putidaredoxin Pseudomonas putida P79 DNA-binding protein FeLV Feline leukemia virus P80 Proline-rich glycoprotein CD Human, Homo sapiens (parotid
saliva) P81 Protein S4Cll-neurotoxin non-toxic Forest cobra, Naja melanoleuca
homologue (venom) P82 Phosphatidylethanolamin-binding Bovine, Bos taurus (brain cytosol)
protein P83 Prolactin, PRL 20 kOa, PRL 177 Tilapia, Oreochromis mossambicus
(pituitary) P84 Prolactin, PRL 24 kOa, PRL 188 Tilapia, Oreochromis mossambicus
(pituitary) P85 Phospho-6-fructo-2-kinase/fructose- Rat, Rattus norvegicus (liver)
2,6-biphosphatase P86 Protein P (glycine cleavage system) Chicken, Gallus gallus (liver) P87 Protamine P2 Mouse, Mus musculus (sperm nuclei) P88 Proline-rich protein A Human, Homo sapiens (saliva) P89 Pancreatic stone protein Human, Homo sapiens (pancreatic
calculi) P90 Purothionin Wheat, Triticum aestivum P91 Gonadotropin-releasing-hormone Human, Homo sapiens
protein, pro- (hypothalamus) P92 Plastocyanin b Poplar, PopUlus nigra P94 Capsid head precursor II, IPII Bacteriophage T4 P95 Capsid head precursor III,IPIII Bacteriophage T 4 P96 Capsid head precursor P23 Bacteriophage T4 P97 Capsid head precursor IPEP VII Bacteriophage T 4 P98 Capsid head precursor P22 Bacteriophage T4
Appendices 317
Code Protein Source
P99 Plastocyanin Rice, Oryza sativajaponica (leaves)
PAO Phospholipase A2 Indian cobra, Naja Naja Naja PAl Plasminogen Bovine, Bos taurus (plasma) PA2 Plasminogen Dog, Canis lupusfamiliaris
(plasma) PA3 Pseudomurein Methanobacterium
thermoautotrophicum (cell wall)
QOO Oligomycin sensitivity-conferring Bovine, Bos taurus (heart protein,OSCP mitochondria)
QOI OMPA (ompA) membrane protein, outer Escherichia coli membrane protein II·
QOIP OMPA (ompA) membrane protein pro-, Escherichia coli (outer membrane) tolG protein pro-
Q02 Calcium-binding protein,oncomodulin Rat, Rattus norvegicus (hepatoma) Q03 Ovalbumin Chicken, Gallus gallus (egg white) Q04P Ovomucoid (PSTI-type proteinase Chicken, Gallus gallus (egg white)
inhibitor) pre-Q05 Oxytocin Synthetic Q07 Ovomucoids 54 species Birds (54 miscelaneous species)
(egg white) Q08 Ovomucoids 47 species Birds (47 miscelaneous species)
(egg white) Q09 Ovomucoid Harlequin quail, Cotumix
delegorguei (egg white)
ROO Glycoprotein ERA Rabies virus ROIP Receptor lambda pre- Escherichia coli R02P Relaxin pre- Rat, Rattus norvegicus (ovary,
corpora lutea) R03 Renin Mouse, Mus musculus (submaxillary
gland) R03A Renin light chain Mouse, Mus musculus (submaxillary
gland) R03P Renin prepro- Mouse, Mus musculus (submaxillary
gland) R04 Retinol-binding protein Human, Homo sapiens R05 Rhodopsin Bovine, Bos taurus (retina) R06 Riboflavin-binding protein Chicken, Gallus gallus (egg white) R07 Ribonuclease St Streptomyces erythreus R08 Ribonuclease Bovine, Bos taurus (pancreas) RIO Ribonuclease Pig, Sus scrofa (pancreas) Rll Ribonuclease Pike whale, Lesser rorquat,
Balaenoptera acutorostrata Rl2 Ribonuclease African porcupine, Hystrix
cristata R13 Ribonuclease Barnase Bacillus amylo/iquefaciens Rl4 Ribonuclease Tl,taka-diastase Staphylococcus aureus Rl5 Ribosomal protein BLlO Bacillus stearothermophilus Rl6 Ribosomal protein BL9 Bacillus subtilis Rl7 Ribosomal protein HS3 Halobacterium marismortui Rl8 Ribosomal protein Ll7 Bacillus stearothermophilus
318 Appendices
Code Protein Source
RI9 Ribosomal protein L27 Bacillus stearothennophilus R20 Ribosomal protein S9 Bacillus stearothennophilus R21 Rubredoxin Desulfovibrio vulgaris R22 Ribosomal protein YP Al Baker's yeast, Saccharomyces
cervisiae R23 Ribulose bisphosphate Tobacco, Nicotiana tabacum (leave)
carboxylase/oxygenase R23A Ribulose biphosphate Tobacco, Nicotiana tabacum (leave)
carboxylase/oxygense subunit S R24 RNA polymerase dNA-dependent Escherichia coli R2S Rubredoxin Peptostreptococcus elsdenii R27 Ribosomal protein S6 Halobacterium marismortui R28 Ribosomal protein SI2 Halobacterium marismortui R29 Ribosomal protein SIS Halobacterium marismortui R30B Relaxin B-chain Spiny dogfISh, Squalus acanthias
(ovary) R31 Rubredoxin Chlorobium thiosulphatophilum
(strain PM) R32 Ribosomal protein Ll2 Methanococcus vannielii R33 Ribonuclease guanyl-specific Penicillium chrysogenum IS2A R34 Ribosomal protein SII Halobacterium marismortui R3S Ribonuclease NI Neurospora crassa R36 Replication initiator-galactosidase Escherichia coli R37 Repressor Rec-A Escherichia coli R38 Rimorphin neuropeptide Synthetic R41 Ribosomal protein LI Escherichia coli R42 Ribosomal protein L2 Escherichia coli R43 Ribosomal protein L3 Escherichia coli R44 Ribosomal protein L4 Escherichia coli R45 Ribosomal protein LS Escherichia coli R46 Ribosomal protein L6 Escherichia coli R47 Ribosomal protein L7 Escherichia coli R48 Ribosomal protein L8 Escherichia coli R49 Ribosomal protein L9 Escherichia coli R50 Ribosomal protein LlO Escherichia coli RSI Ribosomal protein L II Escherichia coli R52 Ribosomal protein LI2 Escherichia coli R53 Ribosomal protein L13 Escherichia coli RS4 Ribosomal protein Ll4 Escherichia coli RSS Ribosomal protein LIS Escherichia coli R56 Ribosomal protein Ll6 Escherichia coli R57 Ribosomal protein L 17 Escherichia coli R58 Ribosomal protein Ll8 Escherichia coli R59 Ribosomal protein Ll9 Escherichia coli R60 Ribosomal protein L20 Escherichia coli R61 Ribosomal protein L21 Escherichia coli R62 Ribosomal protein L22 Escherichia coli R63 Ribosomal protein L23 Escherichia coli R64 Ribosomal protein L24 Escherichia coli R6S Ribosomal protein L25 Escherichia coli R66 Rennin A, chymosin A Bovine, Bos taurus (calf stomach) R67 Ribosomal protein L27 Escherichia coli R68 Ribosomal protein L28 Escherichia coli
Appendices 319
Code Protein Source
R69 Ribosomal protein L29 Escherichia coli R70 Ribosomal protein L30 Escherichia coli R71 Ribosomal protein L31 Escherichia coli R72 Ribosomal protein L32 Escherichia coli R73 Ribosomal protein L33 Escherichia coli R74 Ribosomal protein L34 Escherichia coli R7S Ribosomal protein S10 Escherichia coli R76 Ribosomal protein SII Escherichia coli R77 Ribosomal protein S12 Escherichia coli R78 Ribosomal protein S 13 Escherichia coli R79 Ribosomal protein S14 Escherichia coli R80 Ribosomal protein SIS Escherichia coli R81 Ribosomal protein Sl6 Escherichia coli R82 Ribosomal protein S 17 Escherichia coli R83 Ribosomal protein Sl8 Escherichia coli R84 Ribosomal protein Sl9 Escherichia coli R8S Ribosomal protein S2 Escherichia coli R86 Ribosomal protein S20 Escherichia coli R87 Ribosomal protein S21 Escherichia coli R88 Ribosomal protein S3 Escherichia coli R89 Ribosomal protein S4 Escherichia coli R90 Ribosomal protein SS Escherichia coli R91 Ribosomal protein S6 Escherichia coli R92 Ribosomal protein S7 Escherichia coli R93 Ribosomal protein S8 Escherichia coli R94 Ribosomal protein S9 Escherichia coli R9S Angiotensinogen, renin substrate Horse, Equus cahallus (plasma)
polypeptide R96 Ribonuclease Casiragua, Proechimys guairae
SOO Superoxide dismutase Fe Pseudomonas ovalis SOl Salmine Hokkaido salmon, Oncorhynchus
keta S02 Sauvagin Phyllomedusa sauvagei (skin) S03 Secretin Pig, Sus scrofa S04 Secretin Bovine, Bas taurus (intestine) SOS Secretory protein SVS-IV, SVS-S Rat, Rattus norvegicus (seminal
vesicles) S06 Core protein Semliki Forest virus S07 Serine hydroxymethyltransferase Rabbit, Oryctolagus cuniculus
(liver mitochondria) S08 Serumalbumin Human, Homo sapiens (plasma) S08P Serumalbumin pre- Human, Homo sapiens (liver) S09 Serumalbumin Bovine, Bas taurus (plasma) SIO Core protein Sindbis alpha virus, SIN Sl1 Statherin Human, Homo sapiens (parotid
saliva) S12 Steroid-binding protein F subunit Rat, Rattus norvegicus (prostate)
SI S13 Steroid-binding protein F subunit Rat, Rattus norvegicus (prostate)
S2 S14 Steroid-binding protein F subunit Rat, Rattus norvegicus (prostate)
S3
320 Appendices
Code Protein Source
SIS Streptokinase Streptomyces griseus S16 Structural protein PIS HTLV T-cell leukemia-lymphoma virus,
HTLV (human) S17 Subtilisin Bacillus amylosacchariticus S18 Mesentericopeptidase, Bacillus Bacillus mesentericus
mesentericus alkaline proteinase SI9 Subtilisin BPN' ,subtilisin A, Bacil/us subtilis
subtilopeptidase S20 Superoxide dismutase CuZn Baker's yeast, Saccharomyces
cerl!l)isiae S21 Superoxide dismutase Mn Bacillus stearothermophilus S22 Superoxide dismutase CuZn Human, Homo sapiens (erythrocyte) S23 Superoxide dismutase CuZn Photobactmum leioghnati S24P Serumalbumin prepro- Rat, Rattus norvegicus (liver) S2S Synacthen Synthetic S26 Serine hydroxymethyltransferase Rabbit, Oryctolagus cuniculus
(liver cytosol) S27 Serine endopeptidase B Streptomyces griseus S28P Stromelysin pre- Rabbit, Oryctolagus cuniculus S29P Stromelysin pre- Human, Homo sapiens S30P Stromelysin pre-, transin pre- Rat, Rattus norvegicus S31 Streptococcal peptidase A Streptococcus hemolyticus group A S32 Superoxide dismutase Fe Escherichia coli S33 Succinyl transferase Bovine. Bos taurus (kidney cortex) S34 Soybean hydrophobic protein Soybean, Glycine max (seeds) S3S Streptomyces DD-peptidase Streptomyces R61 S3S Scylliorhinine ZI DOgfISh, Scylliorhinus caniculus
(sperm nuclei) S37 Selenoprotein A Clostridium stricklandii S38 Aspartic endopeptidase B, acid Scytalidium lignicolum
protease B
TOO Thermitase 17rerm04ctinomyces vulgaris TOI Thioredoxin Escherichia coli T02 Thioredoxin T 4 Bacteriophage T4 T03 Thrombin Human, Homo sapiens T03P Thrombin pro-, prepro- Human, Homo sapiens T04 Toxin ClOS2C2 Eastern green mamba, Dendroaspis
angusticeps (venom) TOS Toxin Cl3S1Cl Eastern green mamba, Dendroaspis
angusticeps (venom) T06D Thymosin beta 4 Bovine, Bos taurus (calf thymus) T06H Thymosin beta 8 Bovine, Bos taurus (calf thymus) T061 Thymosin beta 9 Bovine, Bos taurus (calf thymus) T07 Thynnin, protamine Z2 Bluefin tunafish, 17runnus T08 Thyroglobulin Guinea pig, Cavia porcel/us T09 Thyroliberin,thyrotropin-releasing Synthetic
factor, TRH TIO Tobacco mosaic virus protein Tobacco mosaic virus Til Tobacco mosaic virus protein Tobacco mosaic virus Holmes rib
grass TI2 Tobacco mosaic virus protein Tobacco mosaic virus Cowpea TI3 Coat protein Tobacco necrosis satellite virus
Appendices 321
Code Protein Source
T14 Tonin Rat, Rattus norvegicus (maxillaris) TIS Toxin Cl3SIC3 Eastern green mamba, Dendroaspis
angusticeps (venom) T16 Toxin b Forest cobra, Naja melanoleuca
(venom) T17 Toxind Forest cobra, Naja melanoleuca
(venom) T18 Bungarotoxin alpha Cobra, Bungarus multicinctus
(venom) T19A Enterotoxin AI-subunit Vibrio cholerae T19B Enterotoxin B-subunit Vibrio cholerae T20 ToxinCm-IO Egyptian cobra, Naja haje
annuli/era (venom) TIl ToxinCm-14 Egyptian cobra, Naja haje
annuli/era (venom) T22 Toxin Cm-13b Egyptian cobra, Naja haje
annuli/era (venom) T23 ToxinCm-2e Egyptian cobra, Naja haje
annulI/era (venom) T24 ToxinCm-7 Egyptian cobra, Naja haje
annuli/era (venom) T2S Cytotoxin V-II-4 Mozambique cobra,Najamossambica
mossambica (venom) T26 Toxin alpha Easter green mamba, Dendroaspis
angusticeps (venom) T27 Toxin gamma Eastern green mamba, Dendroaspis
angusticeps (venom) T28 Bungarotoxin beta 2 Cobra, BungaTUS multicinctus
(venom) TI9 Toxin 4-9-6 Western green mamba, Dendroaspis
viridis (venom) T30 Neurotoxin 4-7-3,toxin neuro- 4-9-3 Western green mamba, Dendroaspis
viridis (venom) T31 Neurotoxin 4-11-3D Western green mamba, Dendroaspis
viridis (venom) T32 Toxin VN I Jameson's mamba, Dendroaspis
jamesoni kaimosal (venom) T33 Toxin VN III Jameson's mamba, Dendroaspis
jamesoni kaimosal (venom) T34 Enterotoxin STp Escherichia coli (strain 18D) T3S Enterotoxin B Staphylococcus aureus S-6 T36 Toxin A-III heteronemertine Cerebratulus lacteus (mucus) T37 Neurotoxin short chain AA C Common death adder, Acanthophis
antarcticus (venom) T38 Neurotoxin 3-9-4 Forest cobra, Naja melanoleuca
(venom) T39 Neurotoxin schistosa 4 Beaked sea snake, Enhydrina
schistosa (venom) T40 Neurotoxin a Australian sea snake, Aipysurus
laevis (venom) T41 Neurotoxin D Indian cobra, Naja noja (venom) T42 Neurotoxin III Broad-banded blue sea snake,
Laticauda semi/asctata (venom)
322 Appendices
Code Protein Source
T43 Neurotoxin oxiana alpha Asian cobra, Naja naja oxiana (venom)
T44 Toxin Cl3S2C3 Eastern green mamba, Dendroaspis angusticeps (venom)
T4S Toxin non-curarimimetic V-Ill Cape Cobra, Naja nivea (venom) T46 Transmembrane protein 3,band 3 Human, Homo sapiens (erythrocyte)
protein, anion transport protein T47C Troponin I Rabbit, Oryctolagus cuniculus
(cardiac muscle) T47S Troponin I Rabbit, Oryctolagus cuniculus
(skeletal muscle) T48 Triosephosphate isomerase Rabbit, Oryctolagus cuniculus
(muscle) T48P Transmembrane glycoprotein VS pre- Vesicular stomatitis virus T49 Triosephosphate isomerase Bacillus stearothermophilus TSOP Tropoelastin B pre- Chicken, Gallus gallus (aorta) TSIC Troponin C Bovine, Bos taurus (heart) TS2C TroponinC Rabbit, Oryctolagus cuniculus
(skeletal muscle) TS3 Trypsin If Broad-fmgered crayfish,Astacus
fluviatilis (hepatopancreas TS4 Trypsin Shrimp, Artemia salina TSS Trypsin Streptomyces griseus TS6 Trypsin Bovine, Bos taurus (pancreas) TS6P Trypsinogen Bovine, Bos taurus (pancreas) TS7P Trypsinogen pre- Dog, Canis familiaris (pancreas) TS8A Tryptophan-synthase protein alpha Escherichia coli
-subunit,synthetase A protein TS9 Tuberculin active protein Mycobacterium tuberculosis T60 Tubulin alpha-subunit Pig, Sus scrofa (brain) T61 Tubulin beta-subunit Pig. Sus scrofa (brain) T62 Turnip yellow mosaic virus protein Turnip yellow mosaic virus T63P Thrombin pro- Bovine, Bos taurus T64 Tobacco mosaic virus protein Tobacco mosaic virus Dahlemense T6S Thrombosthenin M Horse, Equus caballus (blood
platelets) T66 Neurotoxin notexin Common austral.tiger snake,
Notechis scutatus scut. (venom) T67A Taipoxin alpha Taipan, Oxyuranus scutellatus
(venom) T67B Taipoxin beta I Taipan, Oxyuranus scutellatus
(venom) T68 Thermolysin Bacillus thermoproteolyticus T69 Tuftsin Synthetic TIO Toxin non-curarimimetic V-I12 Cape cobra, Naja nivea (venom) TIl Toxin non-curarimimetic V-I13 Cape cobra, Naja nivea (venom) TI2 Neurotoxin b Australian sea snake, Aipysurus
laelJis (venom) TI3 Neurotoxin c Australian sea snake, Aipysurus
laevis (venom) TI4 ToxinCm-4a Egyptian cobra, Naja haje
annuli/era (venom)
Code
T7S
T76 T77P T78 T79
TBO
T81
T82
TB3 T84 TBS
TB6
TB7 T88
T89 TOO
T91
UOO UOI
UOIP
U02 U03P U04
UOS
U06 U07 U08 U09 UlO
Ull
YOO
zoo
Protein
Neurotoxin schistosa S
Tryptophanase Trypsinogen 2 preToxin alpha Toxin RPIII
Beta-tubulin subunit
Neurotoxin b, pseudonaja toxin b
Tau protein, microtubule-associated protein tau Thioltransferase Neurotoxin kappa-flavitoxin Cytotoxic basic polypeptide, LCBP
Trypsin inhibitor Bowman-Birk type, RBTI Enterotoxin A Troponin C
Thesaurin Toxin XI
Polyprotein 346 kDa
Protein PepMS Utero globin
Utero globin pre-
Vasoactive octacosapeptide, VIP Whey phosphoprotein pre-Yeast aspartic endopeptidase A, saccharomyces aspartic proteinase Z-protein, fatty acid-binding protein, sterol-carrier protein Vasopressin Arg-Vasopressin Lys-Urease Protein PepM49 Ubiquinol:cytochrome-c reductase 9,S-kDa protein Vasoactive octacosapeptide, VIP
Xenopsin
Zn-alpharglycoprotein
Appendices 323
Source
Beaked sea snake, Enhydrina schistosa (venom) Escherichia coli Dog, Canisfamiliaris (pancreas) Cobra, Naja nigricollis (venom) Sea anemone, Radianthus paumotensis Physarum polycephalum (myxamoebae) Australian common brown snake, Pseudonaja textilis (venom) Bovine, Bos taurus (brain)
Pig, Sus scrofa (liver) Bungarusf!aviceps (venom) Thailand cobra, Naja naja siamensis (venom) Rice (bran)
Staphylococcus aureus Frog, Rana esculenta (skeletal muscle) Xenopus laevis (oocyte) North african scorpion, Buthus occitanus tunetanus Tobacco etch virus
Streptococcus group A serotype 5 Rabbit, Oryctolagus cuniculus (uterus) Rabbit, Oryctolagus cuniculus (uterus) Pig, Sus scrofa (intestine) Rat, Rattus norvegicus Baker's yeast, Saccharomyces cerevisiae Rat, Rattus norvegicus (liver)
Synthetic Synthetic Jack bean, Canava/ia ensij'ormis Streptococcus group A serotype 49 Bovine, Bos taurus (heart)
Human, Homo sapiens (intestine)
Synthetic
Human, Homo sapiens (plasma)
SUbject Index
$ (synthetic substrate) 5
A ACC-C [XE9] 60 ACE [XV4] 217 Achromobacter
collagenase [XMW] 230 protease I [XFV] 23,29,36,82,230
Achromobacter iophagus collagenase [XMW] 23,193,230 collagenase B 194
Achromobacter Iyticus endopeptidase I [XFV] 23, 29, 36, 82, 230 endopeptidase II 82 endopeptidase III 82
Acid metalloproteinase cartilage [XN3] 187, 189
Acinetobacter sp. collagenase 194 Acremonium chrysogenum serine
proteinase 122 Acremonium ki/iense serine endopeptidase
[XFO] 23,39,122, 123 Acrosin [XEK] 23,32,36,40,45, 116
pro- 45 Acrosomal proteinase [XEK] 45 ACTH synthase [XVI] 90 Actinidia anionic protease [XCL] 148 Actinidin [XCL] 23,148 Actinomyces serine proteinase [XG7] 23, 98 Adrenal
acid proteinase [XAU] 136 aspartic endopeptidase [XAU] 23,28, 136 cathepsin D [XAU] 136
Adrenal medulla cysteine endopeptidase [XCT] 86 serine endopeptidase [XGD] 87, 230
Aeromonas neutral endopeptidase [XNB] 158
Agavain [XUAj 228 Agkistrodon contotrix protein C activator
[XE9] 60 Agkistrodon halys
proteinase a [XN5] 23,38,165 proteinase b [XN6j 23,32,38,165
Subject Index 325
proteinase c [XN7] 23,29,37,40,165 serine proteinase [XN7] 23,29,37,40, 165
Agkistrodon leucostoma neutral endopeptidase [XMU] 23,37,166
Agkistrodon rhodostoma serine endopeptidase alpha [XFA] 61,63 endopeptidase beta 61 endopeptidase gamma [XWB] 166
Akistrodon see" Agkistrodon" Aleurain [XCW] 216 Alkalase Novo 182 Alkaline proteinase C [XGB] 119 Allomyces Ca-activated endopeptidase
[XUY] 219 Alternative C3 convertase 53 Alternative C5 convertase 53 Amino acid symbols 5, 11 Ancistrodon see "Agkistrodon" Ancrod [XFA] 61,64 Angiotensin-converting enzyme [XV4] 30,
173,217 Angiotensin-forming enzyme [XAZ] 201 Angiotensinogenase [XAZ] 201 Ap/ysia metalloendopeptidase [XM5] 88 Aqualysin 1 [XG4] 23, 106 Arg-C proteinase [XFM] 50, 230 Arg-Lys esteropeptidase [XCV] 87,230 ARH
alpha [XFA] 61,63 beta 61 gamma [XWB] 166
Armillaria mel/ea neutral endopeptidase [XUS] 23, 29, 85, 230
Arthrobacter serine endopeptidase [XEQ] 218
Arthropode proteinase [XFEj 226 proteinase [XFU] 226
Arvin [XFA] 61 Asclepain [XCG] 23
I 227 II 227
Asp-N endopeptidase [XVC] 101 Aspartic proteinases 3, 4
326 Subject Index
Aspergillopeptidase A [XAH] 158 B [XOS] 118 C [XG5] 118, 196
Aspergillus flavus alkaline endopeptidase [XEV] 22, 23, 38, 117 serine-endopeptidase [XEV] 22,23,38, 117
Aspergillus melleus serine proteinase 231 Aspergillus niger macros porus aspartic
endopeptidase A [XAI] 23,30,38,129 Aspergillus ochraceus neutral endopeptidase [X~6] 23,28,38,42,107
Aspergillus oryzae alkaline endopeptidase [XG5] 23,28,29, 38,42,117,118,231 aspartic endopeptidase [XAG] 77 "mold proteinase" 117 neutral endopeptidase [XMN] 23,37,41
form I 159 form II 159
serine proteinase [XG5] 23,28,29,38,42, 117,118,231
Aspergillus saitoi aspartic endopeptidase [XAH] 23,30,37,158
Aspergillus sc/erotiorum collagenase 194 Aspergillus sojae
aspartic endopeptidase I [XA7] 30,140 carboxyl proteinase I [XA7] 30,140 serine proteinase 231
Astacus fluviatilis low mol.wt endopeptidase [XUB] 17,23, 28,29,37,40,202,205 trypsin-like endopeptidase [XGN] 23, 76
Astacus leptodactylus low mol.wt endopeptidase [XUV] 23,28,30,37,40, 214
Autolysin
B
gamete [XVUJ 218 sporangial [XVT] 219
Bacillus amyloliquefaciens neutral endopeptidase [X~H] 157
Bacillus cereus collagenolytic endopeptidase [XNP] 32, 197 neutral endopeptidase [X~H] 157
Bacillus megaterium neutral endopeptidase [XUW] 23,29,37, 164
Bacillus mesentericus serine proteinase 182 Bacillus subtilis
neutral endopeptidase [X~H] 23,37,41, 157
var.amylosacchariticus neutral endopeptidase [X~H] 157, 182
Bacillus thermoproteolyticus neutral proteinase [X~G] 155
Bacillus thuringiensis neutral metalloendopeptidase [XNK] 163 inhibitor A [XNK] 163
Bacterial 19A proteinases 230 Bacterial proteinase Novo 182 Bacteriophage T4 maturation proteinase
[XVJ] 96, 230 Bacteroides gingivalis prolyl endopeptidase
[XVZ] 207,210 Baker's yeast
proteinase A [XAQ] 145 proteinase B [XFT] 124
BAPA-peptide hydrolase [XNO] 32 Batroxobin [XFB] 62, 63, 64 Bb complex 53 Beta-endorphin synthase [XVI] 90 Beta-nerve growth factor endopeptidase 47,
48 Binding site 6 Bitis gabonica serine proteinase [XEW] 62 Bombyx mod trypsin-like endopeptidase
[XGV] 76 Bonds
cleavage-susceptible 35 resistant 35
Bothropasin [XWG] 23, 37, 167 Bothrops atrox
reptilase R 61 serine endopeptidase [XFB] 63 serine endopeptidase (platelet activating) [XFl] 62
Bothrops jararaca endopeptidase A [XUZ] 23, 38, 63
Bothrops proteinase A [XUZ] 23,38,63 Brain "Cl-activated enzyme" 173 Bromelain [XCD] 21, 23, 24, 28, 29, 30, 32,
38,40,41,42,183,184 A 184 B 184 II 184 III 184
Bromelin 184
C C2a-complex 53 C3 convertase 53 C3-proactivator convertase [XFR] 54 C3b inactivator [XFQ] 54 C3blNA [XFQ] 54 C4b-binding protein 54 C5 convertase 53 CAF [XCI] 149
Calcium-activated neutral proteinase [XCI] 149
Calculations 9 Calpain [XCI] 24,29,30, 38, 149
I low-Ca-requiring 149 II high-Ca-requiring 149
Candida albieans aspartic endopeptidase [XAK] 24,37,41,130
Candida Iipolytiea serine endopeptidase [XEU] 228
CANP [XCI] 149 CANPI [XCI] 149 CANP2 [XCI] 149 CANP3 [XCI] 149 CANPII [XCI] 149 Carboxydipeptidase 217 Carboxypeptidase
A 103 B 86,88,173 G[XCJ] 228 N 173 pro- 104, 110 pro-, subunit II III
CASF [XCI] 149 Cathepsin
B [XCA] 24,29, 152,215 Bl [XCA] 215 B3 [XCM] 151 BA[XCM] 151 collagenolytic [XCU] 153 D [XAF] 5,24,28,29,36,39,42, 132, 135, 136, 137, 140, 153 D (Lung asp-p I) 39 E [XAO] 24,39,41, 132, 135 G [XEO] 1,24,39,112, 113, 114, 115 H [CXN] 152,216 I Ehrlich ascites [XC2] 24,38,41, 133, 153, 154 II Ehrlich ascites [XUl] 24,39,154 L [XCM] 20,24,28,29,38,41, 151 N [XCU] 24,38,153 R [XFZ] 135 ribosomal [XFZ] 135 S 151
Christmas factor activated [XE2] 56 Chromatin neutral endopeptidase [XGE]
83 Chymase [XAE] 127 Chymase [XFL] 113 " Chymases" 107 Chymoelastase guanidine-stable [XGB] 119 Chymopapain [XCE] 24, 38, 40, 147 Chymosin [XAE] 24, 39, 127, 129, 142
pro- 127 Chymotrypsin [XEA] 1,8,9, 10, 11, 12, 13,
14,15,16,17,19,24,28-30,33,36,45,69,
Subject Index 327
83,93,105,107,111-114,116,117,120, 121, 122, 123, 124, 173, 195, 196,219,220, 230 II [XGP] 107,111 A 107, 110, 113 alpha- 107 B 107, 110, 116 C [XEC] 24,28,29,39,42, 104, 107,110, 111, 113, 119, 124 delta- 111, 107, 108 gamma- 107 nitrated 108 pi- 107
Chymotrypsin hornet [XEB] 24, 112 Chymotrypsin-like skin endopeptidase
[XGS] 112 Chymotrypsinogen A 55,83,107, Ill, 139,
159 "Chymotrypsins" 107 Cleavage probability %Pn 9, 10, 12 Cleavage specificity
enzyme-substrate ratio 22 influence of temperature 22 influence of solvent 22
Clostridiopeptidase A [XMC] 194 B [XCH] 43
Clostridium histolytieum collagenase [XMC] 43,173,194,197,228
Clostridium ramosum AI-A2 protease [XNL] 212 19A protease [XNL] 212
Clostripain [XCH] 24,29,32,36,40,43, 194,230 alpha- 43
Clotting endopeptidase [XVE] 60 CLP [XUR] 173 Coagulation factor
V 66 VIla [XE1] 56 IXa [XE2] 56, 166 Xa [XEH] 56, 57, 60, 64, 66, 230 Xla [XE8] 58 XIIa [XFK] 46, 58 XIII 62 Russell RVVV [XE4] 66 Russell RVVX [XE3] 65
Coagulin 60 Coagulogen [CAL] 59,60 Coecus P proteinase [XMK] 228 Codes
enzyme 4 protein 5 substrate 5
Coefficients Kn 9, 12, 17
328 Subject Index
Collagenase Achromobacter iophagus [XMW] 193 Acinetobacter sp. 194 Aspergillus sc/eroticum 194 Clostridium [XMC] 43 Empedobacter 194 Entomophthora [XFF] 195 Hypoderma [XPU] 125, 195 Pseudomonas marinoglutinosa 194 Streptomyces [XNR] 196 Trichophyton [XMY] 228 type IV [XM9] 188 Uca pugilator [XFE] 125 vertebrate [XMV] 186,216,230, Vibrio alginolyticus var. iophagus [XMW] 193
Collagenase-like activity, thermomycolin 123
Collagenolytic cathepsin [XCU] 153 Complement component
Bb-complex [XFS] 53 Clq 54,81 Clr [XFN] 52 Cis [XG6] 52 C2a 52,53 C2a-complex [XFP] 53 C3 53 C3 convertase (alternative) [XFS] 53 C3 convertase (classical) [XFP] 53 C3a,C3b complex 53 C3b 53,54 C3b,Bb complex 54 C4 52 C4b 53,54 C4b-binding protein 54 C5 53 C5 convertase (alternative) [XFS] 53 C5 convertase (classical) [XFP] 53
Complement factor B 54 C [XFQ] 54 D [XFR] 54 I [XFQ] 54
Conglutinogen-activating factor [XFQ] 54 Conjugase [XCJ] 228 Conventions 3 Crayfish low mw protease [XUB] 202 Crotalase [XFC] 64 Crotalus adamanteus
metalloendopeptidase I 168 metalloendopeptidase II [XNJ] 24,168 serine endopeptidase [XFC] 64
Crotalus atrox anticoagulant proteinase 168 fibrinolytic protease 168 gamma protease 168
kallikrein-like protease 168 "hemorrhagic toxins" 168 alpha protease 168 anticomplementary factor 168 beta protease 168 hemorrhagic toxin a [XN4] 169 hemorrhagic toxin Ht-d [XMA] 21,24, 28,37,168,171 metalloendopeptidase alpha [XMA] 21, 24,28,37,168,171 metalloendopeptidase Ht-a [XN4] 24, 37, 169 metalloendopeptidase Ht-d [XMA] 21, 24,28,37,168,171 non-hemorrhagic collagenase 168
Crotalus ho"idus endopeptidase [XU4] 24, 28,37,167
Cucumisin [XE6] 24, 38, 40, 97 Cysteine proteinases 3,4
lysozomal 1
D Deinococcus serine endopeptidase
[XFY] 123 Desulfurococcus serine endopeptidase
[XG3] 24, 30, 144 Deuterium-exchange 20 DIGEST 7,8 Dipeptidyl carboxypeptidase 215 Drosera aspartic endopeptidase [XAS] 99 Dynorphin-converting enzyme [XCR] 154
E EC Numbers 3,4 Echarin [XUN] 64 Echis carinatus prothrombin-activating
endopeptidase [XUN] 64 sochureki [XUN] 57
EGE-gamrna [XCQ] 136 EI enzyme [XCQ] 136 Elaeophorbia drupifera proteinase 227 Elastase
alkaline bacterial [XGG] 105 leukocyte [XFJ] 25,37,104,224 pancreatic [XFI] 25,28,33,37,41,42, 79, 103, 105, 106, 116, 123, 160, 185, 196, 220,230 pancreatic, pro- 139 Pseudomonas aeruginosa [XMD] 160
Elastase-like enzyme III [XGB] 119 EMC proteinase [XVV] 206, 221 Empedobacter collagenolyticum
collagenase 194 Encephalomyocarditis virus
protein p22 206, 221 endopeptidase [XVV] 206, 221
Endo-oligopeptidase A [XCS] 32,173,223 B [XE7] 206
Endopeptidases 3, 4 Endopeptidase (endoproteinase)
24.11 [XMO] 190 24.15 [XM4] 171, 172 Arg-C [XFM] 50 E pancreatic [XGL] 104 Lys-C [XFV] 82
Endorphin-gamma-generating cysteine endopeptidase [XCQ] 136
Endorphin-generating enzyme Arg[XCQ] 136
Endothia parasitica aspartic endopeptidase [XAM] 25,39,41,142
Endothiapepsin [XAM] 142 Enkephalinase
A [XMO] 190,193 B 190
Entamoeba endopeptidase [XVR] 25, 86 Enterokinase [XEJ] 83,230 Enteropeptidase [XEJ] 83,230 Entomophthora collagenolytic endopeptidase
[XFF] 22,25,39,41,195 Enzyme code 4 Epidermal growth factor-binding protein 47 Er proteinase [XEZ] 94 Erythrocyte
neutral endopeptidase Ca-dependent [XE5] 78, 230 neutral proteinase [XG9] 217
Erythrocyte membrane acidic proteinase I,ll, III [XAl] 25,29, 36,42,137 aspartic endopeptidase I, II, III [XAl] 25, 29, 36, 42, 137
Escherichia coli cytoplasmic serine endopeptidase Re [XGT] 220 cytoplasmic serine endopeptidase So [XGU] 220 membrane endopeptidase IV [XU6] 144 periplasmic endopeptidase I [XEN] 25, 36,120 proteinase Ci 120, 220 proteinase Do 4, 120, 220 proteinase Fa 4, 120, 220 proteinase La 4, 120, 220 proteinase Mi 4, 120,220 proteinase Pi 120, 220 proteinase Re 4, 120, 220 proteinase So 4, 120, 220 proteinase Ti 120, 220
Escherichia freundi endopeptidase [XMF] 228
SUbject Index 329
Esterase B submandibular 47,51 Euphorbain [XG2] 25, 137 Euphorbain 1, d, k [XG2] 137 Exopeptidases 3
F Factor
B 53,60 B,Bb 53 betalH 54 C 54 D 53,54 H 54 Va 59,65,66 VII 56,61 VIII 56,57, 166 VIlla 59 IX 56,58,61,65 X 56,57,61,65, 166 Xa 56,57,59,65 XI 58 Xla 56,58 XII 58 XIIa 58,59 XIIa "fragment" 58 XIIa alpha 58 XIIa beta 58 XIII 62
Fibrinase [XEI] 79 Fibrinogenase [XEG] 54 Fibrinolysin [XEI] 79 Fibronectin gelatinase [XV9] 220 Fibronectin laminase [XWA] 192 Ficin [XCC] 5,25,28,32,38, 183, 184
II [XCC] 30, 183 III [XCC] 183
Fixation preference Fp 9, 15, 16 Fixation site types 35 Flavobacterium 1..-11 enzyme [XUl] 200 Flavobacterium meningosepticum prolyl
endopeptidase [XGR] 207 FN-gelatinase [XV9] 220 FN-Iaminase [XWA] 192 Frequency probability 8 Fusarium moniliforme aspartic endopeptidase
[XA2] 25,39,140
G Gabonase [XEW] 62 Gadus ogac proteinase 2 126 Gag-pol proteinase [XA9] 221 Gamma-giutamyl hydrolase [XC]] 228 Gamma-renin [XVP] 202 GAP-releasing enzyme [XV3] 90 Gastricsin [XAD] 25,29,37,126
pro- 126
330 Subject Index
Oelatinase [XM9] 186,188,230 Gingival tissue proteinase 187 Glioe/adium endopeptidase [XUD] 228 Gly-Gly endopeptldue [XUI] 200 Granulocyte elastase [XFJ] 104 Greenland cod proteinase 2 126 Ouanidinobenzoatase [XVK] SO
H Haemophilus inj1uenzae
IgA protease 1 [XNE] 212 IgA protease 2 [XN2] 212
Hageman factor activated [XFK] 46, 58 Halobacterium extracellular serine
endopeptidase [XGF] 2S,106 Halocynthia roretzi serine proteinase
[XGQ] 116 Hatching enzyme [XMl] 98 Hemophilus aegypticus IgA protease 213 Hemophilus inj1uenzae IgA protease
1 [XNE] 212 2 [XN2] 212
Hemorrhagic proteinase IV [XU4] 167 Hevain [XVI] 227 HFa [XFK] 58 HIV aspartic proteinase [XA9] 221 HOSP [XUU] 174HP-IV [XU4] 167 Ht-b, Ht-c, Ht-e [XMA] 168 Ht-f 168 Human skin collagenase [XMV] 189 Hurain [XUE] 228 Hypoderma collagenase [XFU] 25,36, 195 Hypodermin A [XF2] 25,36,73,74 Hypodermin B [XF3] 2S, 36, 73
I IDE [XVL] 126 IgA protease 212 Immunodefficiency virus aspartic
endopeptidase [XA9] 221 Immunoglobulin A endopeptidase 212 Immunoglobulin Al endopeptidase
Haemophilus inj1uenzae 1 [XNE] 212 Haemophilus inj1uenzae 2 [XN2] 212 Neisseria gonorrhoe type 1 [XNM] 212 Neisseria gonorrhoe type 2 [XND] 212 Neisseria meningitidis 1 [XNA] 212 Neisseria meningitidis 2 [XNC] 212 Streptococcus pneumoniae 1 [XNF] 212 Streptococcus sanguis [XM2] 212
Immunoglobulin AI-A2 endopeptidase Clostridium ramosum [XNL] 212
InA [XNK] 163 Inhibitor A Bacillus thuringiensis [XNK] 163 Insulin-degrading endopeptidase [XVL] 126 IRCM-serine proteinase 1 [XOl] 89
Irpex lacteus aspartic endopeptidase B [XA3] 25, 30, 37,128 rennet powder 128
Isorenin [XAZ] 201 IUPAC/IUB Commission on Biochemical
Nomenclature (CBN) 3
K KAF [XFQ] 54, 149 Kallikrein
alpha- 47 beta- 47 beta-A 47 beta-B 47 gamma- 47 glandular [XFH] 47 pancreatic [XFH] 47 plasma [XFG] 46,81 pre- 46 pro- 47 salivary [XFH] 47 submandibular [XFH] 47 submaxillary [XFH] 51 tissue [XFH] 47, SO, 81 urinary [XFH] 47
Keratinase Streptomyces!radiae [XUF] 84 Trichophyton [XMZ] 228
Kidney brush border neutral proteinase [XMO] 190 membrane-bound neutral proteinase [XMO] 190 microsomal metalloendopeptidase [XNI] 191 neutral metalloendopeptidase [XNI] 191
Kinetic studies 17 Kininase B [XE7] 206 Kininases I, 173 Kininogenase [XFO] 46 Kininogenin [XFO] 46 K"corr 9, 12
L Leader peptidase [XUU] 174 Lens neutral endopeptidase [XWD] 221 Leu-proteinase [XOO] 102 Leucine-specific serine proteinase [XOO]
102 Leucostoma peptidase A [XMU] 166 Leukocyte
elastase [XFJ] 112 Oly-Xaa endopeptidase [XM9] 188 membrane neutral endopeptidase [XFW] 49
LH-RH degrading proteinase [XU8] 93 Lipotropin beta activating enzyme
[XU2] 77, 137 Lotus aspartic endopeptidase [XA W] 228 Lung
acid proteinase [XAF] 132, 136 proteinase I 132, 136
Lys-C proteinase [XUQ] 84 LYSIS 2,3,4,6,7,8,18,22,67,68,79,95,
202,230 codes 4
Lysobacter enzymogenes endopeptidase Lys-C [XUQ] 25,36,84,230
Lysostaphin [XVI] 200 Lysy1 bond proteinase [XFV] 82 Lysy1 endopeptidase [XFV] 82
M Mast cell proteinase
I [XFL] 29,30,32, Il3 granules 25 soluble 25
II [XF6] 25,29, Il4 RMCPII 114
Mast cell tryptase 88 Matrix metalloproteinase
1 [XMV] 186 2 [XM9] 186,188 3 [XVQ] 186, 225 4 186 5 187 6 [XN3] 25,37, 187, 189 7 [XNQ] 2S, 187, 189 nomenclature 186
Mean probability 13 Medu1lasin [XGW] lIS Megateriopeptidase [XUW] 164 Membrane metalloendopeptidase 2
[XNO] 2S, 192 Membrane-bound
brain cysteine endopeptidase [XCR] lS4 metalloendopeptidase 24.11 [XMO] 25, 30-32,189,190
Meprin [XNO] 30, 32, 190, 192 Mercuripapain 145 Metalloproteinases 3, 4
microbial 1 Metridium endopeptidase A [XED] 29,116 Mexicain [XUG] 228 Micrococcus caseolyticus neutral
endopeptidase [XMJ] 29,161 Miniplasmin 79 Mold proteinase Aspergillus oryzae 118 Molsin IS8 Monascus kaoliang aspartic endopeptidase
[XBO] 25, 38, 139
Subject Index 331
Mucor miehei aspartic endopeptidase [XAN] 2S, 36, 129, 142
Mucor pussilus aspartic endopeptidase [XAN] 142
Mucor rennin [XAN] 142 Mytilidase [XUT] 228 Myxobacter
N
AL-l proteinase I [XUP] 25,37,84,198 AL-1 proteinase II [XUQ] 84, 198 alpha-lytic serine proteinase [XEL] 25, 28,37,41,106,185,198 beta-lytic endopeptidase [XMP] 25,198 Lys-C proteinase 84, 230
Nagase ISS Neisseria gonorrhoe
IgA protease 1 [XNM] 212 IgA protease 2 [XND] 212
Neisseria meningitidis 19A protease 1 [XNA] 212 IgA protease 2 [XNC] 212
Neochymotrypsinogen III Neoplasmin 79 Nepenthes aspartic endopeptidase [XAV] 99 Nepenthesin [XAV] 99 Nerve growth factor
endopeptidase beta 47 gamma-subunit 47
Neurospora crassa extracellular alkaline endopeptidase [XGH] 25,39,122
Neurotensin neutral metalloendopeptidase [XNI] 213
Neutrophil elastase [XFJ] 104,224 p-Nitropheny1acetate hydrolase II
[XGB] 119 Nomenclature 1,3 Non-randomness 10
o Oxyuranus scutellatus prothrombin-activating
endopeptidase [XV8] S7, 65
p
PABA-peptide hydrolase [XNO] 192 Paecilomyces varioti aspartic endopeptidase
[XAP] 143 Pancreatic neutral proteinase [XGL] 104 Pancreatin 103 PAP [XME] 197 Papain [XCB] 19,25,28,29, 33, 38, 8S, 142,
145,147,148,149,215,224,225,230 Papaya peptidase [XCF] 25,38,147 Papaya proteinase [XCF] 25,38,147
III 147
332 Subject Index
Parapepsin I [XAB] 131 II [XAC] 132
Parasilurus collagenolytic serine endopeptidase [XG8] 196
PCE [XVI] 90 Penicillium expansum aspartic
endopeptidase 139 Penicillium brevicompactum aspartic
endopeptidase 139 Penicillium chrysogenum endopeptidase
[XU7] 25,38,222 Penicillium italicum aspartic
endopeptidase 139 Penicillium janthinellum aspartic
endopeptidase [XAJ] 26,29,39,41,138 Penicillium notatum extracellular
endopeptidase [XUH] 139,228 Penicillium roque/orti neutral endopeptidase II
[XNS] 26,41,164 Penicillium spinulosum aspartic
endopeptidase 139 Penicillium stipitatum aspartic
endopeptidase 139 Penicillium vermiculatum aspartic
endopeptidase 139 Penicillium wortmanii aspartic
endopeptidase 139 Penicillopepsin [XAJ] 138, 140 Pepsin [XAA] 8,9, 14, 15, 16, 19,26,28,29,
30,41,99, 126, 128, 129, 130, 132, 138, 139, 143,230 A [XAA] 39,130, 131, 132 B [XAB] 26,39, 131, 132 C [XAC] 26,39,40,42,131,132 D [XAA] 130
Pepsinogen 130 Peptidase A Penicillium janthinellum
[XAJ] 138 Peptidoglycan endopeptidase [XUI) 200 Phage procoat-Ieader peptidase [XUU] 174 Physarum aspartic endopeptidase [XAS) 228 Pinguinain [XUJ) 228 Pituitary
anterior Ca-independent endopeptidase [XU8) 93 cation-sensitive neutral endopeptidase [XWD] 221 maturation enzyme [XG1) 89 post-Leu-Leu endopeptidase [XU9) 102
Plasmin [XEI) 22,26,33,36,59,79,81 Glu- 79 Lys- 79 mini- 79 neo- 79 Val- 79
Plasminogen 48,49,79, 103 Plasminogen activator [XFD] 48, 49, 79
tissue- 49 urokinase-type- 49
Plasmodium aspartic endopeptidase [XAT] 228
PMN elastase [XFJ) 104 Poliovirus
endopeptidase [XVA) 205,221,230 protein 3C [XVA) 205
Post-Leu-Leu endopeptidase 230 Post-proline cleaving enzyme [XE7] 206 Post-proline endopeptidase [XE7] 206 PPH [XNO) 192 Predictions of cleavage probability 8, 16 Probability coefficients 8 Proclotting enzyme 60 Procollagen C-endopeptidase [XM7) 100 Procollagen N-endopeptidase [XM3] 211,
230 Procollagenase activator [XUC] 219 Proconvertin [XEl] 56 Proctase A [XAI] 129 Proenkephalin converting enzyme [XCT]
86 Progonadoliberin proteinase [XV3) 90 Progonadotropin-releasing-hormone
proteinase [XV3) 90 Prohormone serine proteinase [XGl) 89 Proinsulin-processing endopeptidase
[XVI) 90 Prolipoprotein-signal endopeptidase
[XUU] 174 Prolyl endopeptidase [XE7) 1,26,31,32,
36,173,206,213,230 thiol dependent [XCP] 31,32,207,209
Prolyl endopeptidase Bacterioides gingivalis [XVZ] 207,210
Prolyl endopeptidase Flavobacterium [XGR] 31,209
Prolyl-D,L-alanine peptidylhydrolase [XCP) 209
Pronase 75, 119,230 (component) [XF9] 27,28,75, 119 (component) [XGA) 27,33, 36, 74, 75 (component) [XGB) 27,30,33,39,75, 119 (component) [XMM) 27,37,40,75, 119, 159
Proopiocortin converting enzyme [XVI) 90
Proopiomelanocortin-converting proteinase [XVI) 90
Propheromone convertase Y [XF5) 91 yscF [XVYJ 92
Protein C 55,59,61,65,66, 166 activated [XGM] 59 activator 60
Protein codes 5 Proteinase
24.11 [XMO] 190 24.15 [XM4] 171,172 3C [XVA] 20S
precursor 3CD 206 A [XVM] 47 Arg-C [XFM] SO B [XVN] 47 C[XUQ] 84 Ci 220 Do 220 E [XGL] 26,28, 104 EP-I1 [XNN] 163 ER[XEZ] 94 Es [XMI] 161 Fa 220 I [XAF] 132 K [XEP] S, 26, 185 La 220 Lys-C [XFV] 82 Mi 220 N 60 name 4 Pi 220 SI 47 S3 47 Ti 220 V8 [XEZ] 26, 28, 94, 224, 230
Proteinases bacteriallgA 212 matrix-degrading I, 186 microbial 231 prohormone-conversion 1 snake venoms 1 unknown mechanism of action 4
Proteus mirabilis alkaline endopeptidase [XVB] 26,38,198,199
Prothrombase [XEH] 57 Prothrombin 54,56,57,60,61,64,65, 166 Pseudomonas aeruginoSQ
alkaline endopeptidase [XME] 26,38,40, 197,199 elastase [XMD] 26,37,160, 162, 197,211 neutral metalloendopeptidase [XMD] 26, 37,160,162,197,211 serine elastase [XER] 211 serine endopeptidase [XER] 211
Pseudomonas fragi endopeptidase [XVC] 101,230
Pseudomonas marinogiutinosa collagenase 194
Pseudomurein endopeptidase [XV2] 215
Subject Index 333
Pseudotrypsin [XEF] 66, 69, 73 Pycnoporus coccineus aspartic endopeptidase
[XA4] 26,30,37,141 PZ-peptidase [XUR] 171,173
R Rat mast cell proteinase II [XF6] 114 Rat muscle cell protease I [XFL] 113 Receptor-transforming factor 149 References 6, 233 Renin [XAZ] 30,145,201,202,230
gamma [XVP] 202 Rennet 127, 142 Rennilase 142 Rennin [XAE] 33, 127, 143
forms A,B,C,C2 127 Repressor rec-A activated autocleavage
[XVO] 181 Reptilase R [XUZ] 62, 63 Restriction proteinases 229, 230
definition 229 Rheumatoid synovial collagenase 187 Rhizopus
aspartic endopeptidase [XAL] 26,37,40, 41, 132, 133,139 pepsin [XAL] 139
Rhodotorula aspartic endopeptidase [XAR] 144
Ribosomal serine proteinase [XFZ] 135 RMCP I [XFL] 113, 1lS RMCP II [XF6] 113-115 RSP-V 50 RTF 149 Russell's viper venom
factor V activator [XE4] 66 factor X activator [XE3] 65
RVVV[XE4] 65 RVVX [XE3] 65
S Saccharomyces
aspartic proteinase [XAQ] 145 serine proteinase [XFT] 124
Salivain [XGY] 92 Sarcina neutral endopeptidase [XMK] 228 Scopu/ariopsis endopeptidase [XUK] 26,28,
38,222 Scytalidium /ignico/um
aspartic endopeptidase A [XAS] 26, 30, 39,40,141 aspartic endopeptidase B [XA6] 26,31, 38,140-142
Sea anemone proteinase A [XED] 116 Sea urchin hatching endopeptidase
[XMl] 98 Sepia endopeptidase [XWC] 28, 117
334 Subject Index
Serine amidase 6S,66 Serine proteinases 3, 4
arthropods 77 Se"atia marcescens
cysteine endopeptidase 73kDa [XCy] 224 extracellular endopeptidase [XMQ] 210
Se"atia sp. alkaline endopeptidase [XVD] 26,38,40, 198, 199
SI protease [XF6] 113,114 Signal peptidase [XUU] 174 SK protease [XFL] 113 Sm 9 Skeletal muscle serine endopeptidase
[XFL] 113 cell granule-proteoglycan bound 114
Small intestine muscle serine endopeptidase [XF6] 36, 113,114
Solanain [XUL] 228 Soluble
brain cysteine endopeptidase [XCS] 173, 223 brain metalloendopeptidase [XM4] 172, 223 cytoplasmic endopeptidase [XM4] 30-32, 172 epidermal cysteine endopeptidase [XCZ] 32, 223
Somatostatin-28 convertase [XCV] 87 Sorangium
alpha-lytic proteinase [XEL] 18S beta-lytic proteinase [XMP] 198
Sorghum aspartic endopeptidase [XAY] 97 Sporotrichum pulverulentllm
endopeptidase I [XMR] 124 endopeptidase II [XMS] 124
Standard error Sm 9 Standard polypeptides 19
alpha2-macroglobulin 22, 33 angiotensin 22, 30, 40 angiotensinogen 30 bradykinin 22, 32, 40 glucagon 8, 19, 22, 29
three-dimensional structure 20 X-ray diffraction 20
insulin 8, 19,21,22,23,28, 3S, 36 tertiary or secondary structure 19
Staphylococcal proteinase I [XEZ] 94 proteinase II [XCK] 224 proteinase III [XMI] 161
Staphylococcus aureus cysteine endopeptidase [XCK] 224 neutral endopeptidase [XMI] 26,161,224 serine endopeptidase [XEZ] 26, 28, 94, 224,230 V8-proteinase [XEZ] 26, 28, 94, 224, 230
Statistics 8 errors 10
Streptococcal peptidase A [XCI] 148 Streptococcus cremoris metalloendopeptidase ~ 26,29,31,32,163
Streptococcus cysteine endopeptidase [XCI] 26,38,41,148,231
Streptococcus diacetilactls neutral endopeptidase Al [XNH] 26,37,162
Streptococcus mitor IgA protease 213 Streptococcus pneumoniae IgA protease
[XNF] 212 Streptococcus sanguis 19A protease
[XM2] 212 Streptococcus thermophilul intracellular
endopeptidase [XML] 26,29,37,162 Streptomyces collagenase [XNR] 196 Streptomyces erythreus trypsin-like serine
endopeptidase [XF7] 26,36,74 Streptomyces fradiae
alkaline proteinase III [XGK] 26, 39, 121 keratinase alkalophilic [XUF] 84 serine endopeptidase Ib [XGI] 26, 121 serine endopeptidase II [XGJ] 26,121 serine endopeptidase III [XGK] 26,39, 121 trypsin-like serine endopeptidase IV [XF8] 26,36,74,75,121
Streptomyces grlseus neutral metalloendopeptidase [XMM] 27, 37,4O,7S, 119,159 protease 1 [XGB] 119 serine endopeptidase A [XF9] 27,28, 7S, 119 serine endopeptidase B [XGA] 27,33,36, 74,75 serine endopeptidase C [XGB] 27, 30, 33, 39,75,119 trypsin-like proteinase [XGA] 36
Streptomyces rectus var. proteolytlcu, proteinase thermophilic [XET] 228
Streptomyces rutgersensls serine endopeptidase A [XGC] 27,119,120
Streptomyces serine endopeptidase thermophilic [XET] 228
Stromelysin [XVQ] 169, 186, 189,225 Stuart factor 6S
activated [XEH] S7 Submandibular
esterase B S 1 proteinase A [XFM] SO proteinase V SO, SI
Submaxillary proteinase A [XVM] SO, SI proteinase B [XVN] SI serine endopeptidase A [XFM] SO
Subsites 11, 14,40 nomenclature 6
Substrate codes 5 Subtilisin [XEM] 27,33,39,41, 106, 119,
121,182,230 A 27,39,41,182 B 27,39,182 BPN' 182, 186 Carlsberg 182 Nagarse 182 nitrated 182 Novo 182
Subtilopeptidase A, B, C [XEM] 182 Synonyms 4 Synovial collagenase 187 Synthetic substrates
T
codes 5 notation 5
Tabemamontanain [XUM] 228 Tachyp/eus
clotting endopeptidase [XVE] 59 factor B activated 60 protease N 60
Taka-diastase [XAG] 77 Telopeptidase 186 Tenebrio
alpha-endopeptidase [XEY] 77,225 beta-endopeptidase [XHA] 77, 225 trypsin [XHA] 77
Tetrahymena extracellular endopeptidase EP(+G) [XVF] 27,28,36,41,226 extracellular endopeptidase EP(-G) [XVG] 27,28,39,41,226 intracellular endopeptidase [XVH] 27,28, 36,41,226
Thermolysin [XMG] 5,27,28, 33, 37, 41, 155, 160, 161, 191,230
Thermomyco1ase [XES] 4, 123, 196 Thermomycolin [XES] 4,20,27-29, 39,
123 Thermus serine endopeptidase [XG4] 106 Thrombin [XEG] 33,50,54,56,57,59,61,
62,63,64,65,81,230 alpha- 55, 59, 60 beta- 55 gamma- 55 insolubilized 55 pro- 54,56,57,60,61,64,65,166
Thrombocytin [XF 1] 62 Thrombokinase [XEH] 57 Thyroid aspartic endopeptidase [XAU] 136 Thyroliberin deamidase [XE7] 206
Subject Index 335
Tissue endopeptidase degrading collagenase synth.substrate [XUR] 4, 173 kallikrein [XFH] 50 plasminogen activator [XFO] 48
Tobacco etch virus cysteine endopeptidase [XCO] 148, 230
Tonin [XGY] 30,92,93 Trametes sanguinea aspartic
endopeptidase 141, Transin [XVQ] 225 Transport peptidase [XUU] 174 TRF deamidase [XE7] 206 TRH deamidase [XE7] 206 Trichophyton collagenase 196 Trichophyton mentagrophytes keratinase
[XMZ] 228 Trichophyton schoen/einii collagenase
[XMY] 196, 228 Trimeresurus flavoviridis
basic endopeptidase [XV7] 27, 170 metalloendopeptidase H2 [XM8] 27,37, 40, 168-171
Trimeresurus mucrosquamatus hemorrhagic factor a [XWE] 27, 37, 171 hemorrhagic factor b [XWF] 27, 37, 171
Tripeptidase 217 Tritirachium alkaline endopeptidase
[XEP] 185,231 Trypsin 1,3,19,27,32,33,36,45,47,50,
55,59,66,73,74,76,77,78,79,82,83,84, 88, 91, 121, 195, 196,216,219,220,230 alpha- 29,66,69, 73 beta- 29,47,66,69 chymotrypsin-like cleavages 68,73 crystalline 29 immobilized 69 pseudo- [XEF] 29
Trypsinogen 66,78,83, 139, 159,215 Trypsinogen kinase [XAG] 77, 78 Tryptase [XGZ] 3, 88
U Uca pugi/ator
collagenolytic endopeptidase [XFE] 27, 39,41,125 trypsin-like endopeptidase II [XF4] 27, 36,74
Uniqueness 10 Urokinase [XFO] 48, 79 Uterine collagenase 187 Uterus metalloproteinase [XNQ] 189
V V8 proteinase [XEZ] 33, 94 Val-plasmin 79
336 Subject Index
Valyl-proteinase [XVS] 103, 230 VCP [XEB] 112 Vertebrate collagenase [XMV] 12S, 173,
186,193,196,219 Vibrio alginolyticus var.iophagw collagenase
[XMW] 23, 193, 230 Vipera Russelli
endopeptidase RVVV [XE4] 66 endopeptidase RVVX [XE3] S9,65
VOP [XEB] 112
Y Yeast
aspartic endopeptidase A [XAQ] 145,201 endopeptidase yscD [XVS] S, 200 endopeptidase yscE [XV6] 12S endopeptidase yscF [XVY] 92 serine endopeptidase B [XFT] 27,39, 124, 14S
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