Linfoma di Burkitt (L-B) - unibo.itcampus.unibo.it/137138/1/03_Burkitt.pdf · Recurrently mutated...
Transcript of Linfoma di Burkitt (L-B) - unibo.itcampus.unibo.it/137138/1/03_Burkitt.pdf · Recurrently mutated...
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Linfoma di Burkitt
(Burkitt)
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Aims….Attitudes are more
important than abilitiesMotives are more
important than methodsCharacter is more
important than clevernessAnd heart takes precedence
over the head…..
Denis P. Burkitt, 1991
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LINFOMA DI BURKITT (LBT)
endemico: zone centrali dell’Africa (malaria)età pediatrica; sedi: mandibola, ovaio
sporadico: paesi occidentalietà variabile; sedi: intestino, gonadi, SNC
HIV-correlato: SNC, etc.
Buona risposta in età pediatrica con terapie aggressive
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FORMA ENDEMICA(Lancet Oncology 2004; 5:738-46)
Patogenesi del linfoma di Burkitt endemico legata alla cooperazione di:- EBV (immortalizzazione),- malaria (spinta proliferativa),- Arbovirus trasmessi da mosche (stimolo immunitario),- Euphorbia tirucalli (danno al DNA),- traslocazione coinvolgente c-MYC.
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HIV infection and c-MYC status in endemic Burkitt lymphomaCampidelli, C., Gazzola, A., Vitone, F., Tumwine, L., and Pileri, S.A.Hum. Pathol., 39:1408-9, 2008.
Hum. Pathol., 39:817-823, 2008.
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Patient and material collection
• 95 cases from Ugandan tribes
• Most cases occurred in patients aged 9-10
• Site of involvement:- lymph node (34 cases)- abdomen (26 cases)- gonads (25 cases)- jaw (10 cases)
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HIV-status
• None of the samples showed HIV integration
• HIV-1 DNA was investigated by:RT-PCR amplifying gag region (142 bp)nested PCR amplifying env region (248 bp)
Driver GA et al. J Virol Methods, 2007Brachtel EF et al. AIDS Res Hum Retroviruses, 2002 Strappe PM et al. J Virol Methods, 1998
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LINFOMA DI BURKITT
MORFOLOGIA: endemico/sporadico= isomorfitaglia media omogeneacromatina reticolare2-6 nucleolicitoplasma basofilo/vacuolatocrescita coesivamitosi numerosissimeaspetto a cielo stellato
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LINFOMA DI BURKITT
FENOTIPO: SIgM+/marcatori B+
CD10+
Bcl-6+
Bcl-2-
c-myc+
Mib-1+ = 100%(CD30; CD138: e/HIV+)
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CD10 Bcl-6
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Bcl-2
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Ki-67MIB1
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BL subtypes are all related to GC cells & presents several deregulated genes and cellular programs
SPARC BLGerminal Center B cells
+1 -1
Naïve
Germinal center B -cells
Memory
BL
Grey zone
GC N/M
+1 -1
NaiveGerminal center B cellsMemoryBL
Grey zone
GC N/M
1,000 genes
• immune response • proliferation (MYC)• adhesion • NOTCH signaling
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Early or re-entering germinal centre B-cells!
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CD138
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CD30
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GENOTIPO
LBT endemico: EBV+
t(8;14)
LBT sporadico : EBV+: 25% HIV-
50% HIV+
t (2;8)t(8;22)diversi breakpoints
Sul cromosoma 8: gene c-MYC
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EBER
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GENOTIPO
LBT endemico: EBV+
t(8;14)
LBT sporadico : EBV+: 25% HIV-
50% HIV+
t (2;8)t(8;22)diversi breakpoints
Sul cromosoma 8: gene c-MYC
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Question
• Are the three subtypes of Burkitt
lymphoma different diseases or different
features of the same disease?
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Gene expression profiling of Burkitt Lymphomas
Davè S et al, NEJM 2006Hummel M et al, NEJM 2006
SPORADIC!
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Piccaluga PP, De Falco G, Kustagi K, Gazzola A, Astolfi A, Agostinelli C, Leucci E, Onnis A, Tripodio C, Sapienza MR, Bellan C, Lazzi S, Tumwine L, Mawanda M, Ogwang M, Calbi V, Formica S, Califano A, Pileri SA and Leoncini L: Gene expression analysis uncovers similarity and differences among Burkitt lymphoma subtypes. Blood 2011, 117:3596-3608.
Burkitt lymphomaFollicular lymphomaDiffuse large B-cell lymphomaPrimary mediastinal B-cell lymphomaChronic lymphocytic leukemiaNormal B-cells
Molecular profiling of BL subtypes
BL is a unique molecular entity
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Though similar, BL subtypes present differences in their GEPs
eBL sBL HIV-BLeBL sBL HIV-BL eBLHIV-BLsBL
eBLHIV -BLsBL
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eBLsBL
eBLHIV-BL
eBL and HIV-BL: 16 genes (almost identical),
eBL & sBL: 254 genes, including cell cycle regulation.
Though similar, BL subtypes present differences in their GEPs
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GSEA showed that eBL and sBL differ for the expression of genes related to the RBL2 network
RBL2 functional network identified byARACNe
eBLsBL
The results do not vary bysubtracting the MYC network
Accordingly, RBL2 malfunction is relevant for eBL but doesn’t affect sBL.
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BL molecular profile depends also on EBV status
Dregulation of transcription from Pol IIpromoter
induction of apoptosis by extracellularsignals
regulation of programmed cell death
positive regulation of programmed celldeath
induction of apoptosis
positive regualtion of apoptosis
induction of programmed cell death
development
male gamete generation
spermatogenesis
gametogenesis
B
Apoptosis!
AA CCA molecular signature discriminated BLs according to the presence of EBV in both a
training (A) and a test (C) set of cases (chi-sq., p<0.0001).
Such genes were significantly related to apoptosis regulation
20 viral miRNAs
sBL &HIV+
sBL &HIV+
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MYC-translocation negative Burkitt lymphoma differs from classical cases
AA
B
N=11,885 genes
Unsupervised
N=974 genesN=974 genes
A BB
-1
-0.5
0
0.5
1
BL MYC-negBL MYC-pos
Grey zone
MYC-negative
MYC-positive
C
-1
-0.5
0
0.5
1
BL MYC-negBL MYC-posBL MYC-negBL MYC-pos
Grey zone
MYC-negative
MYC-positive
C
Supervised
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Recurrently mutated genes were found in Burkitt lymphoma by NGS
Schmitz R et al, Nature 2012Richter J et al, Nature Genetics 2012
In 70% of sBL cases,mutations affecting the transcription factor TCF3 (E2A) or its negative regulator ID3 fostered TCF3 dependency. TCF3 activated the pro-survival PI(3) kinase pathway in BL, in part by augmenting constitutive B cell receptor signaling.
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High throughput sequencing to further explore these issues
N=26(4.0%)
ID3
MYC
DDX3X*
CCND3
NCOR2
TP53
GNA13TCF3
SMARCA4PDCD11
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Burkitt Lymphoma RNA Sequencing
ILLUMINA HiScanSQ
Bologna University, Columbia University and Siena University
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• 2x75 bp Paired End Reads
• Total # of reads: 1,755 millions (average 83.5 millions for sample)
• Total # of bases: 131 Gigabases(average 6 Gigabases for sample)
• Average theoretical coverage 54X
• 80% base>Q30, mean quality score 32,55
21 Endemic Burkitt Lymphoma Samples -Sequencing Stats
African cases were pretty well preservedin RNAlater