KINETICS AND MECHANISM OF HALOGEN DISPLACEMENT REACTIONS...
Transcript of KINETICS AND MECHANISM OF HALOGEN DISPLACEMENT REACTIONS...
Chapter 1 Introduction
Ph D. Thesis K. B. Jose
Chapter 1
Introduction
Chapter 1 Introduction
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1.1 Chemical Kinetics.
Chemical kinetics deals with the measurement of dynamic rates of chemical reactions
and the interpretation of experimental data to arrive at a possible mechanism [1].
Thermodynamics consider the initial and final states of a reaction and does not consider the
mechanism and the time required. The rate at which a reaction takes place need not be
directly related to the thermodynamic functions of the state of reactants and products.
Equilibrium can be treated in principle on the basis of kinetics considering it as a situation in
which the rates of the forward and reverse reactions are equal. The converse is not true; a
reaction rate cannot be understood on the basis of thermodynamics alone. Therefore,
chemical kinetics may be considered a more fundamental science than thermodynamics.
Unfortunately, the complexities are such that the theory of chemical kinetics is difficult to
apply with accuracy. As a result, we find that thermodynamics will tell with precision the
extent of a reaction, but only kinetics will tell the rate of the reaction.
1.1.1 Determination of rates of reactions
The rate of a given reaction can be determined by following the disappearance of a
reactant or the appearance of a product [1]. Any property that can be measured and
quantitatively related to the concentration of a reactant or product can be used to determine
the reaction rate. A complete kinetic investigation allows the reaction to be described by a
rate law, which is an algebraic expression containing rate constants as well as the
concentration of all reactants that are involved in the rate-determining step and steps prior to
the rate-determining step. The rate law must be established experimentally. In the rate law
each concentration term has an exponent, which is the order of the reaction with respect to
that component. The overall kinetic order of the reaction is the sum of all exponents in the
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rate expression. Kinetics will invariably give a definite answer concerning the individual steps
of a chemical reaction.
The determination of reaction rate by conventional methods reduces to a study of
concentration as a function of time. The quantitative analytical procedures may be divided in
to two broad categories; chemical and physical. Chemical analysis implies a direct
determination of concentration of one of the reactants or products by volumetric procedures.
An important restriction on any chemical method is that it must be rapid compared with the
reaction being studied or if the method is relatively slow, the reaction must be stopped or
frozen by some sudden change such as lowering the temperature, removal of a catalyst,
addition of an inhibitor, or removal of a reactant. Chemical methods of analysis have the
advantage of giving an absolute value of the concentration. On the other hand, physical
methods of analysis are usually much more convenient than chemical methods. Physical
method is one which measures some physical property of the reaction mixture, which changes
as the reaction proceeds. There must be a substantial difference in the contribution of the
reactants and products to the physical property chosen. Common among physical methods are
measurement of pressure or volume change in gaseous reactions; optical methods such as
polarimetry, refractometry, colorimetry, and spectrophotometry; electrical methods such as
conductometry, potentiometry, polarography and mass spectrometry. Theoretically any
property which changes sufficiently could be used to follow the course of a reaction. In
general a physical method of analysis has the advantage of being rapid so that more
experimental points are available in a given time.
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1.1.2 Isosbestic point
In spectroscopy, an isosbestic point is a specific wavelength at which two (or more)
chemical species have the same absorptivity. Such a point corresponds to a wavelength on an
isosbestic plot at which the absorption spectra of two species cross each other; if both species
are in the same concentration, then this represents the molar absorptivity (ε). This is
equivalent to saying an isosbestic point is a wavelength where two or more species have equal
extinction coefficients. A pair of substances can have several isosbestic points in their spectra.
When a 1-to-1(one mole of reactant gives one mole of product) chemical reaction involves a
pair of substances with an isosbestic point, the absorbance of the reaction mixture at this
wavelength remains invariant, regardless of the extent of reaction or position of equilibrium.
This occurs because two substances absorb light of that specific wavelength to the same
extent, and the analytical concentration remains constant. In chemical kinetics, isosbestic
points are used as reference points in the study of reaction rates, as the absorbance at those
wavelength remains constant throughout the whole reaction. Study of the progress of the
reaction using sequential scans with reaction mixture of known composition at different time
intervals gave progressive variation of absorbance with respect to time. The spectra thus
scanned gave important parameters like max value and also isosbestic points showing a neat
conversion of the reactant to product. [15].
1.1.3 Reaction mechanisms from kinetic data
In general the experimental results of studying the rate of a reaction as a function of
concentration, temperature, and other operating variables can be interpreted in several ways;
i.e., there are several conceivable mechanisms consistent with the data [1]. However, a
mechanism that is in agreement with the known facts may be discredited by data from new
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experiments. The difficulty is due to the fact that all such postulated mechanisms are
essentially theories. The results of kinetic measurements furnish facts and mechanism is a
speculative model devised to explain the facts. In spite of this difficulty, many reactions
studied kinetically can be explained by a particular set of simple processes which are
reasonable and so in accord with all chemical experience that we accept them as essentially
true. The justification for this becomes apparent when it is observed that a mechanism can
successfully predict reaction products or the optimum conditions for running a chemical
reaction. The most important circumstantial evidence as to reaction mechanism is the
determination order of the reaction with respect to individual reactants hence overall order
and identity of the products formed. Nowadays molecular modeling by using ab initio
methods has been employed for making logical prediction of reaction mechanisms. The
comparison of the calculated activation energy with the experimental value and their
agreement between can be a support to the mechanism suggested on the basis of kinetic
investigations.
1.1.4 Reaction mechanisms from molecular modeling
Molecular modeling by using ab initio methods has been employed for making logical
prediction of reaction mechanisms. Molecular orbital calculations can be used for estimating
the energies of reactants, products and transition states which allow the determination of
activation energies [2]. Theoretical methods of investigation for postulating reaction
mechanisms, usually do not involve solvent effects but kinetic methods always include
solvent effects. For example, the mechanism of alkaline hydrolysis of amide has been
investigated by ab initio molecular orbital calculations using MP2 methods without
considering the solvent effects [3]. Another example is the study of substitution of 1-halo-
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2,4-dinitrobenzenes by halide ions by applying density functional theory (DFT) in the B3LYP
model [4]. The SNAr mechanism of gas phase reactions of halo-nitrobenzenes with
carbanions has been investigated by DFT calculations to augment the experimental results [5].
1.2 Substitution Reactions of 1-substituted 2,4-dinitro aromatic compounds with amines.
Primary and secondary amines react with 1-substituted-2,4-dinitrobenzenes to form N-
substituted-2,4-dinitroanilines, Scheme 1, by nucleophilic displacement of the substituent [6,
36]. Compounds containing different substituents (e.g. halide, O-alkyl, O-aryl etc) at position
1 can be displaced with amines. The kinetics and mechanisms of these reactions have been
investigated in various conditions. Some of these reactions are strongly accelerated by bases,
but others are insensitive to base catalysis.
NO2O2N
Cl
+ NH2 R
NO2O2N
NH
R
Scheme 1
Nucleophilic substitution reactions of activated aromatic compounds with amines
usually involve the SNAr mechanism as shown in Scheme 2. When the second step is rate
limiting then general base catalysis may be observed. The investigations of the reactions of a
series of chlorodinitrobenzenes with primary and secondary aliphatic amines in acetonitrile
done by Crampton and coworkers [7] have established that the following factors affect the
values of k1 for nucleophilic attack: (a) Ring activation – values of k1 increase with increasing
electron withdrawal by ring substituents but ortho substituents, notably the CF3 group, can
have serious steric effects. (b) Steric effects at the reaction centre – values decrease with
steric congestion at the reaction centre. The steric effects due to leaving group increase in
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order Cl < OPh and the steric effect of the nucleophiles increase in the order n-butylamine<
pyrrolidine ≈ piperidine. (c) Ground-state stabilization – involving resonance interactions
between the phenoxy group and the ring may decrease reactivity.
NO2O2N
X
NH
R
R
+k1
k-1 NO2O2N
NR2
N+ NO2
N+
X
H
R
R
O-
O-
k2
k3X = leaving group
(halide/OR)
Scheme 2
1.2.1 Displacement of chlorine/fluorine
The study of the kinetics and mechanisms of the displacement of chlorine from 1-
chloro-2,4-dinitrobenzene has been the subject of many investigations from 1950’s [8, 9] and
continues to attract the attention of many researchers. A recent example being the
investigation [10] of the effect of an ionic liquid, 1-ethyl-3-methylimidazoliumethylsulfate
([EMIM][EtSO4]) on the rate of the reaction between 1-chloro-2,4-dinitrobenzene and aniline
in methanol, chloroform, and dimethylsulfoxide containing at 25oC. Earlier, Nudelman and
coworkers [11, 12] described a kinetic and spectroscopic study of the reactions between 2,4-
dinitrochlorobenzene and aniline. The reactions were conducted in several benzene–n-hexane
mixtures at 40oC in the presence of variable amounts of aniline. Formation of various types
of electron donor–acceptor complexes and also of hydrogen bonded aggregates was clearly
recognized and the stability constants of several of those molecular complexes were
determined. The observed results afford evidence concerning the critical role that
complexation plays in the kinetic behaviour of these reactions. The reactions in aprotic
solvents exhibit a rate dependence that is third order in amine consistent with aggregates of
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the aniline acting as the nucleophile [13, 14]. Molecular complexes between the aniline and
the substrate were also detected spectrophotometrically. Formation of N-(2,4-phenyl)aniline
was quantitative and pseudo first order kinetics were observed.
NO2O2N
Cl
+NO2O2N
NHNH2
Kinetic parameters have been reported for the reactions of 2-chloro-5-nitropyridine, 2-
chloro-3-nitropyridine, and the corresponding 2-phenoxy derivatives with n-butylamine,
pyrrolidine and piperidine and with n-butylamine and pyrrolidine in dimethyl sulfoxide
(DMSO) as solvent, Scheme 3, [15]. Kinetic measurements were made spectrophotometric-
ally at the absorption maxima of the products using Perkin-Elmer Lambda 2 or Shimadzu
UVPC spectrophotometers. Rate constants were determined at 25oC under first-order
conditions with substrate concentrations of 1×10−4
mol dm−3
and were evaluated by standard
methods. The kinetics of the same reactions in acetonitrile had been investigated earlier [16].
Values in these solvents are compared with those of 2,4-dinitrochlorobenzene, 2,6-
dinitrochlorobenzene, and the corresponding nitro-activated diphenyl ethers. Reactions with
n-butylamine in both solvents gave values of observed rate constants, which increase linearly
with amine concentration indicating that nucleophilic attack is rate limiting. The only
exception is the reactions in acetonitrile where base catalysis was observed.
N Cl
NO2
+ NH2 CH3
N
NO2
NH
CH3
Scheme 3
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Bunnett and coworkers [17] have studied base catalysis of the reaction of N-
methylaniline with 2,4-dinitrofluorobenzene. They have shown that the reaction of N-
methylaniline with 2,4-dinitrofluorobenzene to give the substitution product, is sensitive to
base catalysis, whereas reactions with the corresponding chlorine and bromine compounds are
not. In ethanol, the catalyzed rate is linearly dependent on potassium acetate concentration. In
60% dioxane-40% water, the catalyzed rate shows less than linear response to hydroxide ion
concentration at higher concentrations of the base. The reaction is thus general base
catalyzed since acetate catalyzed reaction is not affected by the addition of acetic acid. These
observations are inconsistent with any form of one-step mechanism for the displacement
reaction. The kinetic data are, however, rationally interpretable in terms of the intermediate
complex mechanism shown in Scheme 4. In combination with other evidences previously
published, the present work firmly establishes the intermediate complex mechanism for a
large group of aromatic nucleophilic substitution reactions, and makes this mechanism
extremely probable for all such reactions.
NO2O2N
Cl
NH
Ph
CH3
+k1
k-1 NO2O2N
N
CH3
Ph
N+ NO2
N+
X
H
CH3
Ph
O-
O-
k2
k3
Scheme 4
The nucleophilic substitution reactions of n-butylamine (BU) and piperidine (PIP)
with 1-chloro-2, 4-dinitrobenzene and 4-chloro-3-nitrotrifluoromethylbenzene were studied
[18] in n-hexane, benzene and mesitylene. The reaction products were identified to be N-
(butyl)-2,4-dinitroaniline and N-2,4-dinitrophenylpiperidine, Scheme 5. The reactions seem
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to follow a bimolecular SNAr mechanism for both substrates and amines. However, whereas
in n-hexane they are base catalysed, in the aromatic solvents only mild acceleration is
observed. The different behaviour of these reactions in the aromatic solvents in comparison
with hexane is explained by the specific solvent effect exerted by the aromatic compounds,
which solvates the aromatic reactant preferentially in view of its electron-donor properties.
These conclusions were confirmed by kinetic studies in hexane-aromatic solvent binary
mixtures. The presence of electron-donor solvents may inhibit SNAr reactions when
association constant of the solvent with the substrate is greater than the EDA constants
between the reactants. These specific solvent effects could also explain why only mild
acceleration is observed in aromatic solvents.
NO2O2N
Cl
NH2n-Bu+NO2O2N
NH
n-Bu
NO2O2N
Cl
+NO2O2N
NNH
Scheme 5
A kinetic and mechanistic study is reported [19] for nucleophilic substitution reactions
of 2,4-dinitro-1-fluorobenzene with a series of secondary amines, Scheme 6, in acetonitrile
and H2O at 25.0°C. The reaction in MeCN results in an upward curvature in the plot of kobs
vs. [amine], indicating that the reaction proceeds through a rate limiting proton transfer
(RLPT) mechanism. On the contrary, the corresponding plot for the reaction in H2O is linear,
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implying that general base catalysis is absent. The ratios of the microscopic rate constants for
the reactions in MeCN are consistent with the proposed mechanism, e.g., the facts that k2/k-1 <
1 and k3/k2 > 102 suggest that formation of a Meisenheimer complex occurs before the rate-
limiting step and the deprotonation by a second amine molecule becomes dominant when
[amine] > 0.01 respectively. The Brønsted-type plots for k1k2/k-1 and k1k3/k-1 are linear with
ânucleophile values of 0.82 and 0.84, respectively, which supports the proposed mechanism. The
Brønsted-type plot for the reactions in H2O is also linear with ânucleophile 0.52 which has been
interpreted to indicate that the reaction proceeds through rate-limiting formation of a
Meisenheimer complex. DNFB is more reactive toward secondary amines in MeCN than in
H2O. The enhanced basicity of amines as well as the increased stability of the intermediate
whose charges are delocalized through resonance are responsible for the enhanced reactivity
in the aprotic solvent.
NO2O2N
F
+NO2O2N
N
Z
Z
NH
Z = CH2,
NH, N-CH2CH
2OH, NCHO and O
Scheme 6
The effect of the addition of small amounts of a protic ionic liquid, ethylammonium
nitrate, to a pure molecular solvent, such as acetonitrile changes the microscopic
characteristics of a reaction medium, was investigated [20]. Nucleophilic aromatic
substitution reactions between 1-fluoro-2,4-dinitrobenzene and n-butylamine or piperidine
was investigated to determine how the addition of known small amount of a protic ionic liquid
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to a molecular solvent improve a reaction process. For the reaction with piperidine, a
decrease in the absorbance values of the substitution product corresponding to this amine
(λmax = 382 nm), can be observed at low concentrations of ethyl ammoniumnitrate (from 0 to
0.025 M). In contrast, the formation of a new species with λmax at 350nm was detected at
ethylamomonium nitrate concentrations greater than or equal to 0.05 M. The above result can
be understood by taking into account that EAN can act as a Bronsted acid and it can establish
acid–base equilibrium with amines, making possible to predict nucleophiles competition. For
the reaction with butylamine, the differences in the absorbance values with the increase of the
ethylammonium nitrate concentrations, cannot be observed because the wavelengths of
absorption for both products are similar. It was observed that the UV spectra for the products
from both amines at high EAN concentrations are coincident.
Akinyele and coworkers [21] have investigated the kinetics of the reactions of 1-
chloro-, 1-fluoro- and 1-phenoxy-2,4-dinitrobenzene, Scheme 7, with piperidine, n-
butylamine and benzylamine and in the case of the ether, morpholine were studied as
functions of nucleophile, DABCO and pyridine concentrations in tetrahydrofuran and ethyl
acetate. The reactions of the ether with n-butylamine and benzylamine in benzene were also
studied as functions of nucleophile, DABCO and pyridine concentrations. A comparison with
results in the literature indicated that the reactions in tetrahydrofuran and ethyl acetate
resemble those in dipolar aprotic solvents when primary amines are the nucleophiles and
those in aprotic solvents when the nucleophile is a secondary amine. An explanation is
suggested for the observation. While the reactions of 1-phenoxy-2,4-dinitrobenzene with
piperidine and morpholine in both tetrahydrofuran and ethyl acetate are strongly catalysed by
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Ph D. Thesis K. B. Jose - 13 -
the nucleophiles, they are not catalysed by pyridine and there is either extremely weak or no
catalysis by DABCO.
NO2O2N
Cl
+NO2O2N
NNH
NO2O2N
O Ph
+NO2O2N
NNH
Scheme 7
Bunnett and co-workers [22] have claimed that the reaction of piperidine with 2,4-
dinitrochlorobenzene in 95% ethanol is first-order and not higher order in piperidine and that
added sodium hydroxide does not accelerate this same reaction in 50% dioxane-50%water.
Kinetics of reactions of aniline and n-butylamine with 2,4-dinitrofluorobenzene was studied.
It was argued that the observations exclude the possibility of base-catalysis in this and similar
systems.
Ross and coworkers [23] have measured the rates of reaction of 2,4-
dinitrochlorobenzene with n-butylamine and sodium hydroxide, both separately and together,
in a mixture of 50% dioxane-50% water at 24.8 ≠ 0.1o. The results suggest but do not prove
that the reaction with the amine is subject to catalysis by both n-butylamine and hydroxide
ion. Results have shown that a complete description of the reaction of 2,4-
dinitrochlorobenzene with both primary and secondary amines in chloroform and in ethanol
requires two kinetic terms, one first-order in amine and the other second-order in amine. In a
more detailed study of the reaction of 2,4-dinitrochlorobenzene with n-butylamine in
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Ph D. Thesis K. B. Jose - 14 -
chloroform it was further found that added triethylamine, which does not itself react with 2,4-
dinitrochlorobenzene at an appreciable rate, nevertheless accelerates the rate of the reaction of
the chloride with n-butylamine.
Forlani and coworkers [24] studied the reaction between 1-fluoro-2,4-dinitrobenzene
and n-butylamine, Scheme 8, in toluene shows a two-step plot of observed rate constant
values vs. the initial values of the concentration of the amine. The usual base-catalysis
mechanism for HF elimination from the zwitterionic intermediate hardly explains this kinetic
behaviour and the kinetic effect of addition of salts (and of 2-hydroxypyridine) to the reaction
mixtures at different initial values of the concentration of n-butylamine. In contrast, the
kinetic behaviours are easily explained by the presence of substrate-amine (or catalyst)
interactions on the pathway of the substitution reaction.
NO2O2N
F
+NO2O2N
NH CH3
CH3NH2
Scheme 8
Mancini and coworkers [25] studied the kinetics of the reaction between 1-fluoro-2,6-
dinitrobenzene and pyrrolidine or piperidine, Scheme 9, in ethyl acetate–chloroform or
acetonitrile and acetonitrile–chloroform binary solvent mixtures. The kinetic response of these
reactions was compared with that of the reactions with piperidine. The aim of this work was
to evaluate the influence of the nucleophile structure and of solvent effects on those reactive
systems. The amine structure has a great influence on second-order rate constants, especially
on the rate constants related to the catalyzed step. In mixtures with chloroform the amine
structure is also responsible for the change in the reaction mechanism. Theoretical quantum
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Ph D. Thesis K. B. Jose - 15 -
mechanical calculations confirm that the origin of these results lies in stereoelectronic effects
due to the conformational difference between the amino moieties in the intermediate adducts
as they release the leaving group. Solvation effects are dominated by non-specific
interactions.
NO2
F
NO2
+NO2
N
NO2
NH
Scheme 9
1.2.2 Displacement of OR/ OPh group
Most reactions of 2,4-dinitrohalobenzenes with amines are mildly accelerated by
bases, but the reaction of 2,4-dinitrophenyl ether with piperidine in 60% dioxane-40% water
is strongly base catalyzed [26, 27]. Crampton and coworkers [28] found that in the reaction
of aniline with 2,4-dinitrophenyl 2,4,6-trinitrophenyl ether in acetonitrile conversion of the
zwitterionic intermediate to products was rate determining and involved both uncatalysed, k2,
and base catalysed, kB[B], pathways. Further, they have reported [29] a kinetic study of the
reactions of anilines containing both remote- and ortho-ring substituents, allowing the
electronic and steric effects on the individual steps in Scheme 10. The kinetic data show that
increasing substitution does not sterically inhibit nucleophilic attack by aniline. The results
show that although substituents at the 3- or 4-positions of the anilines have only small steric
effects, alkyl substituents at the 2-position may result in considerable reductions in reactivity.
In general, the reactions are base catalysed so that a rate-limiting deprotonation of the
zwitterionic intermediate occurs. Only with the dinitro derivatives an uncatalysed reaction
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Ph D. Thesis K. B. Jose - 16 -
involving intramolecular proton transfer is observed and for 2,6-dinitro derivative this
pathway takes all the reaction flux. These effects are more pronounced for the base-catalysed
pathway and in 2,6-dimethylaniline the uncatalysed pathway takes all the reaction flux. In the
case of the 2-fluoro substituent the electronic effect, strong inductive electron withdrawal, is
dominant over steric effects.
X
EWG
+ NH
R
R1
X N+
R
R1
H
EWG
-
k1
k2
NR R
1
EWG
k2
kB
+ HX
EWG = Electron withdrawing group
Scheme 10
Crampton and coworkers [30] presented a detailed and comprehensive analysis of the
competitive behavior of σ-adduct formation versus nucleophilic substitution in the reactions
of the three aliphatic amines with 2-ethoxy- and 2-phenoxy-3,5-dinitropyridine in DMSO.
Most results refer to DMSO but comparison is made with results in acetonitrile and in
dimethylformamide. As with methoxide, initial attack is at the 6-position, however, the use of
amine nucleophiles allows the slower attack at the 2-position, leading to irreversible
substitution, Scheme 11. The ratio of the rate constants for attack by n-butylamine at the
unsubstituted 6-position (k6) and 2-postion (k2) is 2000 for 2-phenoxy-3,5-dintropyridine and
8000 for 2-ethoxy-3,5-dintropyridine. This contrasts with the behavior of 1-ethoxy-2,4,6-
trinitrobenzene, where there are considerable sterric interactions around that position [31].
Here, the ratio of the rate constants, k3/k1, for attack by n-butylamine at the unsubstituted 3-
position and the 1-position, is only 13.
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Ph D. Thesis K. B. Jose - 17 -
N
O
NO2
O2N
CH3
+NH
N
NO2
O2N
N
N
O
NO2
O2N
Ph
+NH
N
NO2
O2N
N
Scheme 11
The reactions of 2,6-dinitrophenyl phenyl ether and of 6-methyl-2,4-dinitrophenyl
phenyl ether with piperidine, morpholine, butylamine and benzylamine are base catalysed in
both dimethyl sulfoxide and acetonitrile [32]. The reaction of 2-phenoxy-3,5-dinitropyridine
with aniline is base catalysed in acetonitrile, but not in dimethyl sulfoxide, and its reactions
with piperidine, morpholine, butylamine and benzylamine in acetonitrile are also base
catalysed. The results are discussed in terms of the prevailing theories of aromatic
nucleophilic substitution reactions. Increase in activation of the substrate increases the k2/k-1,
and k3/k-1, ratios. For ortho substituents, steric/steroelectronic effects in the transition state
reduce both k-1, the rate constant for the decomposition of the zwitterionic intermediate to
reactants, and k2 and k3, the rate constants for its decomposition to products. When the
substrate has two ortho nitro groups the primary and secondary amines show different
behaviour but the same is not found when the substrates contain only one ortho-nitro group.
Chamberlin and coworkers [33] have investigated the reactions of morpholine in
dimethyl sulphoxide at unsubstituted ring positions of 1,3,5-trinitrobenzene, and phenyl 2,4,6-
trinitrophenyl ether, yield anionic σ-adducts via zwitterionic intermediates. Reactions at the 1-
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Ph D. Thesis K. B. Jose - 18 -
position of phenyl 2,4,6-trinitrophenyl ether, phenyl 2,4-dinitronaphthyl ether, and phenyl
2,4-dinitrophenyl ether result in substitution of the phenoxy groups. In both types of reactions
the rate-determining step is a proton-transfer. Comparison of kinetic and equilibrium data
with those for corresponding reactions of piperidine shows that rate constants for proton
transfer are similar for the two amines, but equilibrium constants for zwitterion formation
have lower values for morpholine, the less basic amine. Implications for base catalysis are
discussed.
Banjoko and coworkers [34] studied the kinetics of the reactions of phenyl 2,4,6-
trinitrophenyl ether with piperidine and cyclohexylamine respectively at different amine
concentrations in benzene. The reaction of cyclohexylamine was not base-catalysed while that
of piperidine was catalysed by one molecule of the nucleophilic amine. Addition of small
amounts of hydrogen-bond donor solvent, methanol to the benzene medium of the reactions
produced different effects-rate diminution followed by rate increase in one and continuous
rate diminution in the other. These effects are compared with that of aniline in which a
continuous rate increase was observed. The results are rationalized in terms of the effect of
amine-solvent interaction on the nucleophilicity of the amines in addition to some other
factors operating through cyclic transition states leading to products. It is evident from the
rationalization that the idea of ‘dimer nucleophile’ in nucleophilic aromatic substitution
reactions is erroneous.
1.3.1 Proposed mechanisms for SNAr reactions of amines
Based on the kinetic data mechanisms have been proposed for nucleophilic aromatic
substitution reactions of amines with 1-substituted-2,4-dinitrobenzene. In general, the SNAr
reactions proceed via mechanisms involving a first step in which attack of a nucleophile on an
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Ph D. Thesis K. B. Jose - 19 -
electron-deficient aromatic halide gives an anionic ó-bonded adduct, commonly termed a
Meisenheimer complex (MC) [7,19]. When the nucleophile is a primary or secondary amine
and the leaving group is a halide ion, the first-step in the SNAr process (Scheme 1) probably
leads to formation of a zwitterionic Meisenheimer complex from which two competitive
processes for decomposition have been postulated: (1) expulsion of the fluoride ion leaving
group followed by rapid proton loss from the protonated product dinitroaniline to give the
new substituted aniline (2) base-catalyzed deprotonation of the Meisenheimer complex to
yield a new amino-Meisenheimer complex, an anion that loses fluoride ion to give the same
new aniline product, Scheme 12. Similar mechanism has been proposed for the displacement
of chlorine from 1-chloro-2,4-dinitrobenzene using primary and secondary amines. Results
from kinetic studies indicate that the rate determining step is the formation of the
Meisenheimer complex both in polar and non-polar solvents when the leaving group is a
halide ion.
NO2
O2N
F NH
R
R1
NO2
O2N
F
N+
R
R1H
NH
R
R1
NO2
O2N
F
N
R
R1
NO2
O2N
N
R
R1
- F-
- H+
- F-
NO2
O2N
N+
R
R1
H
NH
R
R1
- H+
MC Anion
Chapter 1 Introduction
Ph D. Thesis K. B. Jose - 20 -
Scheme 12
However, the displacement of an OR or OPh group by primary or secondary amines
proceeds via Meisenheimer complexes but the rate determining step is the decomposition of
the complex, i.e. the deprotonation of the zwitterionic intermediate to form an anionic
intermediate which dissociates to yield the products as indicated by kinetic measurements
[35]. It was shown that the reaction is first order with respect to the substrate and second
order with respect to the amine and overall reaction is third order [6,36].
NO2
O2N
OPh
NH
R
R1
NO2
O2N
OPh
N+
R
R1H
NH
R
R1
NO2
O2N
OPh
N
R
R1
NO2
O2N
N
R
R1
- PhOH
- H+
MC Anion
Scheme 13
1.3.2 Molecular modeling of mechanisms for SNAr reactions
Aromatic nucleophilic substitution reactions are an important class of organic
reactions having synthetic applications and continue to inspire studies related to its kinetics
and mechanisms [35]. Studies have revealed that the displacement of the substituent at 1-
position is faster when the aromatic ring contains electron-withdrawing substituents at ortho
Chapter 1 Introduction
Ph D. Thesis K. B. Jose - 21 -
and para positions [7]. Mechanisms involving the formation and decomposition of
Meisenheimer complexes have been proposed for SNAr reactions on the basis of kinetic
studies [6]. The effect of electron-withdrawing substituents and solvents on the rate of the
displacement of fluorine, chlorine or phenoxy group at position-1 by primary and secondary
amines has been the subject of many investigations [6, 7, 10, 11, 35]. Most of the reports on
kinetic measurements agree that the reaction is second order, first order with respect to the
substrate and first order with respect to the amine, and the rate determining step is the
formation of the Meisenheimer complex. The mechanisms proposed on the basis of
experiments involving the measurement of order of reactions, solvent effects and base
catalysis have been summarized recently [16, 37].
Molecular orbital calculations using Density Functional Theory (DFT) is being
increasingly used for deducing and understanding organic reaction mechanisms in the
molecular level. DFT calculations have been extensively used for elucidating gas-phase
reactions studied using mass spectrometry [38, 39, 40, 41]. The mechanisms of few aromatic
nucleophilic substitution reactions have been investigated by performing theoretical
calculations. For example, the mechanism of nucleophilic displacement of chlorine from 1-
chloro-2,4-dinitrobenzene by thiomethoxide ion (CH3-S-) was recently investigated by both
Hartree-Fock and MP2 methods and the geometries of the intermediates and transition states
were optimized using 6-31+G** basis set [42]. The mechanism involves the formation of
Meisenheimer complex between thiomethoxide ion and 1-chloro-2,4-dinitrobenzene. The rate
determining step is the formation of the Meisenheimer complex and the estimated energy
barrier for its decomposition to products is very small. The calculations also demonstrate that
the barrier for formation of the Meisenheimer complex is higher than the breakdown of the
Chapter 1 Introduction
Ph D. Thesis K. B. Jose - 22 -
Meisenheimer complex, which is in agreement with previous experimental observations in
solution. The free energy profile for this reaction in aqueous solution has also been calculated
at the HF/6-31+G** and MP/6-31+G** levels of theory and showed that hydration affects the
aromatic nucleophilic substitution. The results of this study has been utilized for the
theoretical modeling of the enzyme catalyzed displacement of chloride ion by DFT
(B3LYP/6-311+G**) and PM3 methods [43]. Ab initio computational studies were carried
out on single-step and multistep mechanisms of aromatic substitution of halobenzenes and
halonitrobenzenes with halide anions with the GUASSIAN-92/DFT and GUASSIAN-94
systems [44]. The C6H5X + X- (X = Cl-I) gas phase SNAr reactions proceed via a single-step
mechanism without the formation of a stable C6H5X2- σ-complex. The C6H5F + F
- SNAr
reaction proceeds via a multistep mechanism with the formation of a discrete C6H5F2- σ -
complex as an intermediate, the energy of which is 15.5 kJ mol-1
lower than that of the
separated reactants. Another example explored DFT is the nucleophilic displacement of
fluorine by ammonia [45]. Nucleophilic aromatic substitutions of polyfluoroaromatic
compounds have been proposed to proceed by an addition-elimination mechanism (SNAr) via
an intermediate Meisenheimer complex, where a first transition state (TS1) is assumed to, in
general, determine the reaction rate, rather than a second transition state (TS2) involving a
C_F bond breaking. Calculations at B3LYP/6-31G* level of theory has been utilized to
estimate the energy profile of the reaction between ammonia and polyfluorobenzene and to
arrive at the relative energies of the transition states for the formation and decomposition of
the Meisenheimer complex and demonstrated that the decomposition of the MC is the rate
determining step. In substitution with ammonia preferential ortho-selectivity is realized in non
polar solvents and is relaxed with increasing solvent polarity. The nucleophilic aromatic
Chapter 1 Introduction
Ph D. Thesis K. B. Jose - 23 -
substitution (SNAr) reaction between azide ion and 4-fluoronitrobenzene has been
investigated using DFT calculations in protic and dipolar aprotic solvents [46]. The effects of
solvation on the transition structures, the intermediate Meisenheimer complex, and the rate of
reaction are elucidated. But the mechanism of displacement of aromatic halogen by primary
amines has not been explored using ab initio molecular orbital calculations. The method for
the synthesis of N-(2-nitroaryl)aminoethanol involves either the displacement of halogen
using ethanolamine [47,48] or the Smiles rearrangement of 2-(nitrophenyl)ethylamine [49].
The gas- phase reaction of fluoride ions with nitrobenzene has been investigated in gas phase
and very fast aromatic nucleophilic substitution is observed [50]. The mechanism of the
reaction is characterized by carrying out DFT calculations at the B3LYP/6-311++G
(d,p)//B3LYP/6-311++G(d,p)level of theory using the Gaussian 98 software package. The
DFT calculations are found to provide reasonably reliable estimates for the complexation
energies calculated at different levels of theory and the low local energy barrier found for the
nucleophilic displacement suggests that the nucleophilic aromatic displacement should be
fast, and its efficiency dictated by the density of states of the transition state.
.
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