Kensington Oracle Edition:

Open Discovery Workflow Meets Oracle 10g

Professor Yike Guo

Using Distributed Resources

InformationInformation Discovery

LiteratureLiterature

DatabasesDatabases

OperationalData

OperationalData

ImagesImages

InstrumentData

InstrumentData

Open Discovery Workflow :

Real Time Data Integration

Dynamic ApplicationIntegration

Discovery Services

Intellectual Property Management

Discovery Workflow

KDE Platform Architecture

SDK Model

Web Service Support

Infrastructure

Open Discovery Workflow Model

KDE Applications:

End-user applications and user interface allowing scientists to construct and drive knowledge discovery activities

KDE Middleware:

Managing , executing and deploying discovery plans (workflows) for distributed knowledge discovery and access to distributed resources and services KDE Discovery Services:

Distributed databases, compute servers and scientific devices.

KOE : Open Discovery Workflow for Oracle 10g Kensington : A discovery workflow environment that interfaces with Oracle’s

Data/Text Mining and Life Science components

– Access Oracle 10g analytical function without coding– Data Query via SQL or workflow construction– Visualization and reporting discovery results/process– Deploying reusable discovery process as Web services

Oracle 10g : The most powerful foundation for grid-based informatics

– Scalability : Large scale data analysis with grid support– Performance : Speed and quality– Reliability : Persistence, security and industry standard

Kensington + Oracle 10g : Enterprise Discovery Information Framework

– Fulfilling complex integrative discovery tasks with ease– Organizing large discovery projects– Turning your database into a knowledge base with immediate gain

KDE Oracle Edition Architecture

10g ODM & Text

Oracle Workflow example

Oracle Components

Connect icons to form uniform workflow

Kensington Components

“In Oracle” Processing Drag-and-drop used to create symbolic links to database tables A transparent process brings the data into the system, as if it were a

normal table node A complex SQL query can be built via a workflow for pre-processing

Such a query workflow is transparently executed within Oracle Oracle data/text mining, statistic functions, life science components are accessible through KOE workflow and running transparently within Oracle Building complex discovery applications WITHOUT CODING

Kensington Analytical Server

Oracle 10g ODM and Oracle Text

Kensington Workflow Engine

An Application Example (The Lymphoma Example)

Generate and Compile Code

Choose A Build

Choose algorithm/parameter

Accuracy Testing

View Model

Feature Selection

Sequence Search

Kensington Workflow

Pre-processing

Naïve Bayes Mining and EvaluationAdaptive NB Mining and Evaluation

Apply Classification

Naïve Bayes Mining, Evaluation & BLAST

Rich visualizers to view results

Visualize pre-processed

data

Select attribute importance

visually

Evaluate with ROC plot

Browse classification

models

Evaluate the class

distribution

Inspect the sequence alignment

Summary "Empowered by Oracle Database 10g, InforSense's Open

Discovery Workflow technology has its most powerful execution engine", commented Prof. Yike Guo, CEO of InforSense. "Using InforSense's discovery workflows built upon Oracle's data mining, text mining and R&D database functionality, researchers and organizations can now automate large scale and complex knowledge discovery activities with high performance and reliability.“

“Integrating Kensington Discovery Platform with Oracle Database 10g provides life science researchers with a flexible workflow solution for the intuitive integration of analytics from InforSense and Oracle”, said Dr. Susie Stephens, Life Sciences Product Manager, Oracle Corporation.