J. Dairy Sci. 101:4615–4637 ...Red Blood Cell count (RBC)-1.0 -0.5 0.0 0.5 1.0 PC1, variance...
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J. Dairy Sci. 101:4615–4637 https://doi.org/10.3168/jds.2017-13736 © 2018, THE AUTHORS. Published by FASS Inc. and Elsevier Inc. on behalf of the American Dairy Science Association ®. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/).
Transcript of J. Dairy Sci. 101:4615–4637 ...Red Blood Cell count (RBC)-1.0 -0.5 0.0 0.5 1.0 PC1, variance...
J. Dairy Sci. 101:4615–4637https://doi.org/10.3168/jds.2017-13736© 2018, THE AUTHORS. Published by FASS Inc. and Elsevier Inc. on behalf of the American Dairy Science Association ®.This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/).
Haematocrit (HCT)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
Y4
X8
Kyn:TrpTrp
R123%stim
RBC
HCT
iC5%
Lactation
TMR TETMR SD
TMR Size
TMR ZC
TMR Freq
Red Blood Cell count (RBC)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AK
AG3
P9
E8
RBC
HCT
Lymfocyte count (LY)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AK
AH3
AG4
AG3
AE2
Z13
Z2
X4
J3
G12
G2
D4
GR
LY
Water Intake
WI Freq
CI Freq
Monocyte count (MO)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
R7
O1
N5N4
L3
E33
Haptoglobin
MO
Protein%
BCS
Eosinophile count (EO)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
U2
N9
N2
M1
L3
E2
GREO
C2/C3
Milk urea
TMR Freq
WI Size
CI TZ
Granulocyte count (GR)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
Z13
X4
T2
N2
E2
B1
AST
BilirubineGR
EO
LY
C3%
C2%
C2/C3
CD4:CD8 ratio (CD Ratio)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AF
AD
Q
N2
L3
G6F
E33
E26
E22
E20
E2
CD8
CD Ratio
WI TD
WI SD CI SD
CD8
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AE3Z8
Q
M7
L4
L3
F
E22
E2
CD8
CD Ratio
BCSWI TD
CD4
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AJ
AH3AE1
Z5
P8
N6
E18
Shannon
CD4
FE1
FE2
CI TZ
R123% stim
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
Z14
Y5
Y2
Y1
M1
L1
E35
E17
A
Urea
Kyn:Trp
R123+ Lym%
R123%stim
HCT
iC5%
CI SD
R123 MFI stim
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
Z14
G7
GLDH
Protein
Kyn:Trp
SI
R123+ Lym%
R123 MFIstim
Milk urea
Lactation
BW
R123% unst
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AH2
AD
Z13
Z3
Y5
R1
H
G1E33
E20
E13
E2
B1
R123%unst
TMR TZ
R123 MFI unst
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
X8
X7
X5
S
E33
E21E20 E16
E10 E7Chao1
species
AST
Urea
R123 MFIunst
R123 MFIstim
Milk urea
R123+ Lym MFI
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
T2
P10
P6
P2
J1
G1
F
D4
R123+ Lym MFI
LPS
pH
R123+ Lym%
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
Z15
Y2
Y1
G10
E26
C4
GLDH
R123+ Lym%
R123 MFIstim
R123%stim
C3%
C3
C2/C3
SI
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
U3
T1
J2
G7
GLDH
SI
R123 MFIstim
C4
C3
C2
VFA
pH
Milk urea
Lactation
AB stim
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
U2
T2
R6
R1
B1
ABunstim
ABstim
C3%
C3
C2%
CI Size
AB unstim
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AC
Z15
Z6
Z4
E28
E19
E8
ABunstim
ABstim
C3%
C2%
C2/C3
CI Size
TMR TE
CI ZC
Tryptophan (Trp)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AC
AA
J3
E16
E9
B1
Kyn:TrpTrp
HCT
C5%
C5
C2
Protein yield
Protein%
Water Intake
CI SD
CI Total
TMR TETMR SD
TMR Size
Kynurenine (Kyn)
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
AK
Z9
U4
P9
M2
L8
J3
E26
D3
Kyn:Trp
Kyn
BCS
Kyn:Trp ratio
-1.0 -0.5 0.0 0.5 1.0
PC1, variance explained: 12.04 %
-1.0
-0.5
0.0
0.5
1.0
PC
2, v
aria
nc
e e
xp
lain
ed
: 9.5
9 %
4
3
2
1
A B C D
Z15
Z4
X8
E4
A
Bilirubine
Urea
Kyn:Trp
Kyn
Trp
R123 MFIstim
R123%stim
HCT
BW
BCS
Water Intake
TMR Freq
TMR TETMR SD
TMR Size
