IPB BIODIVERSITY INFORMATICS (IPBIOTICS) -...
Transcript of IPB BIODIVERSITY INFORMATICS (IPBIOTICS) -...
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Bogor Agricultural University
IPB BIODIVERSITY INFORMATICS (IPBIOTICS) Yeni Herdiyeni Computer Vision Research Group (CVRG) Dept. of Computer Science Bogor Agricultural University, Indonesia [email protected]
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Outline • IPB (Bogor Agricultural University) • Indonesia Biodiversity
• IPB Conservation and Germplasm Bank • IPB Biodiversity Informatics (IPBiotics)
• IPBiotics Research Projects
• A challenge biodiversity research
Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University www.ipb.ac.id
Bogor Agricultural University Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University Bogor Agricultural University (IPB), Indonesia www.ipb.ac.id
ENCHANCING UTILIZATION OF HERBAL MEDICINES
STRENGTHENING FOOD AND ENERGY SECURITY
• Local resource-based food diversification
• Bio-energy; • Seed Technologies • Gene/Germplasm Bank
• Conservation and Domestication
• Raw Material Improvement • Product Development • Community Empowerment
BIODIVERSITY RESOURCES
SCOPE & BASIC STRATEGY
Bogor Agricultural University
Conservation International (CI) considers Indonesia to be one of 17 “mega-diversity” countries -- with two of the world’s 25 “hotspots. Although Indonesia covers only 1.3
percent of the earth’s land surface, it includes:
10 % of world’s flowering plant species
12 % of world’s mammals species
16 % of world’s reptile and amphibian species
17 % of world’s bird species
25 % of world’s fish species
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Bogor Agricultural University
Biodiversity Informatics
Application of information technologies to manage biodiversity information, including data capture, storage, search, retrieval,
visualization, mapping, modeling, analysis and publication
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Biodiversity Informatics
• Species 2000 Catalogue of Life (CoL) • Biodiversity Information Standards (TDWG) • Global Biodiversity Information Facilities (GBIF)
• Encyclopedia of Life (EOL) • Consortium for the Barcode of Life (CBOL) • Biodiversity Heritage Library (BHL)
• Group on Earth Observation Biodiversity Observation Network (GEO BON)
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Bogor Agricultural University
Biodiversity Informatics
Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University
IPBIOTICS IPB Biodiversity Informatics This research project was funded by Directorate of General Higher Education, Ministry of Education, Republic of Indonesia (2013-2016)
Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University
IPBiotics Research Project • Establishing IPB Biodiversity Informatics Infrastructure • MedLeaf: Medicinal Leaf Identification
• IPBiotics for Integrated Pest Management System • Rice Crop Field Monitoring System
• Chemical Compound Estimation of Medicinal Leaf
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Our Collaborators
Prof. Dr. Ir. Aunu Rauf, M.Sc Dept. of Plant Protection, IPB
Dr. Ir. Kikin H. Mutaqin Dept. of Plant Protection, IPB
Prof. Ervizal A.M Zuhud Dept. of Forest Conservation and Ecotourism
Prof. Hiroshi Okumura Saga University
Prof. Kohei Arai Saga University
Prof. Stephane Douady University of Paris Diderot Prof. Lilik B Prasetyo
Dept. of Forest Conservation and Ecotourism
Prof. Cam Webb Arboretum of Harvard University
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Bogor Agricultural University
IPBiotics Infrastructure
Southeast Asia International Joint Research and Training Program 2014
Presentation Layer
Business/ Apllication Layer
Data Source
Biodiversity Data Access
IPBiotics
XML/RDF Data Access HTML Data Access
Services
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TDWG ITIS DiGIR ABCD
TDWG (Taxonomic Database
Working Group)
ITIS (Integrated Taxonomic
Information System)
DiGIR (Distributed Generic Information
Retrieval)
ABCD (Access to Biological
Collection Data)
Others… Biodiversity
data resources
Bogor Agricultural University
Computer Vision Technology
Database
Expert System
Decision Support System
Remote Sensing Technology/GIS
Client On-site Person Server Client
Expert
IPBiotics: Interoperate IPBiotics Data
High Performance Computing
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Bogor Agricultural University Southeast Asia International Joint Research and Training Program 2014 http://apps.cs.ipb.ac.id/ipbioticsnew/
Bogor Agricultural University Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Mobile application to acquire data
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Bogor Agricultural University
Mobile application to acquire data
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
MEDLEAF Medicinal Leaf Identification: Mobile Application for Medicinal Leaf Identification based on image processing This research project was funded by Directorate of General Higher Education, Ministry of Education, Republic of Indonesia (2014-2017) International Research Collaboration between Dept. of Computer Science,IPB and Dept. UFR de Physique, University of Paris Diderot
Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University
IPBiotics Project: Medleaf
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Mission: Medicinal Plant Scouting
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Bogor Agricultural University
MedLeaf : Medicinal Plant Identification Database
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Medicinal Leaf Identification
Mobile Android Application
MedLeaf
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Bogor Agricultural University
MedLeaf: Medicinal
Leaf Identification
Computer Vision Technology
MedLeaf
Bogor Agricultural University
Medicinal Plants Documents Search Engine
MedLeaf
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Bogor Agricultural University
Data Partision
Communication
Aglomeration
Computation
Communication
Parallel Computation for Medicinal Leaf Identification (2012-2013)
Bogor Agricultural University
IPBIOTICS FOR INTEGRATED PEST MANAGEMENT SYSTEM
IPBiotics Projects This research project was funded by Directorate of General Higher Education, Ministry of Education, Republic of Indonesia
Southeast Asia International Joint Research and Training Program 2014
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Bogor Agricultural University
IPBiotics Project: Plant Pest and Diseases Identification
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Whitefly (Bemisia tabaci)
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Bogor Agricultural University
Bogor Agricultural University
IPBiotics Project: Plant Pest and Diseases Identification
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Bogor Agricultural University
Citizen Scientist
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Bogor Agricultural University
Mobile Application
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Bogor Agricultural University
Bogor Agricultural University
Pest and Diseases Mapping
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Bogor Agricultural University
A challenge to Biodiversity research Collaboration
• Establishing Biodiversity Informatics Infrastructure • Parallel Computation for Biodiversity Data Processing
• Semantic Analysis for biodiversity • Big data analytics
• Crowdsourcing data analysis
• ….. • Still many challenges ahead!
Southeast Asia International Joint Research and Training Program 2014
Bogor Agricultural University
Thank You
Terima Kasih
Email : [email protected] Website: http://cs.ipb.ac.id/~cv