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Integration of Remote Sensing into Mosquitoborne ...€¦ · T Smith, Centers for Disease Control,...
Transcript of Integration of Remote Sensing into Mosquitoborne ...€¦ · T Smith, Centers for Disease Control,...
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http://calwater.ca.gov
Integration of Remote Sensing into Mosquitoborne Encephalitis Virus
Intervention Decision Support Systems
WK Reisen, UC Davis-CVEC, PIC Barker, UC Davis-CVEC, Co-I
F Melton, CSUMB / NASA Ames, Co-I R Nemani, NASA Ames Research Center, Co-I
B Eldridge, UC Davis-CVEC, Co-IB Lobitz, CSUMB / NASA Ames, Co-I
T Smith, Centers for Disease Control, Co-IV Kramer, CA Department of Public Health, Co-I
S Mulligan, MVCAC, Co-I
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Overview• Encephalitis vectors, transmission cycles and
intervention strategies
• California surveillance and response plan
• CalSurv Gateway
• Models for mosquito abundance and virus transmission
• Extension to other areas
• Progress to date and
plans for final year
CLIMATE
VECTORHOST
VIRUS
CLIMATE
VECTORHOST
VIRUS
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Culex tarsalis and the Culex pipiens complex
• Most important vectors of arboviruses in western North America
• Targets of vector control and arbovirus surveillance programs
• Forecasting models are needed to guide vector control and public health decisions
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Culex tarsalis
• Typical larval habitats
Rice
http://calwater.ca.gov http://watercenter.unl.edu
Row crops
Wildlife refuges
http://farm1.static.flickr.com
http://phil.cdc.gov/
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Culex pipiens complex
• Typical larvalhabitats
http://cpipiens.vectorbase.org/
http://watercenter.unl.edu
Row crops
http://www.pe.com
Green pools
http://eroundlake.com
Urban stormwater devices
Dairy wastewater
http://static.panoramio.com
http://phil.cdc.gov
Containers
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Rural cycles
??
??Bird/Mosquito Movement?
West Nile virus transmission cycles in California
Aedes, CulisetaAedes, Culiseta
Culex tarsalisCulex tarsalis
CulexCulex
pipienspipiens
stigmatstigmat..
??erythroerythro..
Dead end hosts
??
Rural cycles
??
??Bird/Mosquito Movement?
West Nile virus transmission cycles in California
Aedes, CulisetaAedes, Culiseta
Culex tarsalisCulex tarsalis
CulexCulex
pipienspipiens
stigmatstigmat..
??erythroerythro..
Dead end hosts
??
Rural cycles
??
??Bird/Mosquito Movement?
West Nile virus transmission cycles in California
Aedes, CulisetaAedes, Culiseta
Culex tarsalisCulex tarsalis
CulexCulex
pipienspipiens
stigmatstigmat..
??erythroerythro..
Dead end hosts
??
West Nile virus, a vectorborne zoonosis:Simplified amplification and tangential transmission cycles
Actual rural and urban WNV transmission cycles in western NA:• several Culex vectors• variety of avian hosts• no mammalian cycle
Urban cycle
Amplifying hosts
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Mosquitoborne encephalitides: points of intervention
IncidentalHosts
Primary amplification cycle
Vaccination
Integrated vector
management
Personal protection: - avoidance - repellents
Reservoir vaccination
Emergency adulticiding
Modified from CDC website
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Typical surveillance season
TIME [months]
AM
PLI
FIC
ATI
ON
Human cases
Equine cases
Avian infection
Mosquito infectionClimate
Mosquito abundance
Climate variation:1. Only early season predictor2. Determines, in part, the shape of
the amplification curve
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WNV Risk Values
Risk
Level
Avg. Daily
Temperature
Adult
mosquito
abundance
Mosquito
MIR/1,000
Chicken
Seroconversions
Dead Bird
Infections Human Cases
1 <56ºF < 50%
5-yr. Avg.0 0 in region 0 in region
2 57-65ºF 50-90%
5-yr. Avg.0.1 – 1.0
≥ 1 in region,
0 in agency
≥ 1 in region,
0 in agency
3 66-72ºF 91-150%
5-yr. Avg.1.1 – 2.0 1 flock in agency 1 in agency
≥ 1 in region,
0 in agency
4 73-79ºF 151-300%
5-yr. Avg.2.1 – 5.0
2 flocks in
agency2-5 in agency 1 in agency
5 >79ºF > 300%
5-yr. Avg.> 5.0
>2 flocks in
agency>5 in agency >1 in agency
California Mosquito-borne Virus Surveillance and Response Plan
SCORE RISK LEVEL
1.0—2.5 Normal season
2.6—4.0 Emergency planning
4.1—5.0 Epidemic
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Response Plan
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Ja
n
Fe
b
Ma
r
Ap
r
Ma
y
Ju
n
Ju
l
Au
g
Se
p
Oc
t
No
v
De
c
Co
ntr
ibu
tio
n to
Ov
era
ll R
isk
Environmental Conditions
Adult Cx. tarsalis abundance
Virus Isolation Rate
Sentinel Chicken Seroconversions
Equine Cases
Human Cases
Proximity of Virus Activity to Human Population
Environmental conditions are the earliest
indicators of virus transmission risk
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Temperature and WNV transmission risk
From Reisen et al. 2006. J Med Entomol 43: 309-317
Risk Levels 1 2 3 4 5
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TOPS: Common Modeling Framework
Monitoring,
modeling,
& forecasting at
multiple scales
Nemani et al., 2003 and 2007
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Regional Nowcasts: California
Meteorology
(max Temp)
Hydrology
(Soil moisture)
Vegetation
(FPAR / NDVI)
Ecosystem
(Gross Primary Prod.)
Tracking parameters related to mosquito abundance:
Hydrology
(Snow Cover)
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TOPS Temperatures
Tmin
TmaxAgency
Boundaries
Tmean
Risk Level
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Temperature-related risk
Risk Level
= peak
= onset
Human cases
by MVCAC region*:
* few cases in coastal region and deserts
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Results
automatically
sent to CDC
Rapid Arbovirus Data Acquisition: CalSurv Gateway
MVCAC
agencies
enter data
Central server
Historical
Database
updated
Arbovirus bulletins
Field data retrieved and
laboratory test results entered
Interactive maps
automatically updated
Results reported to client automatically after entry
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Risk Assessments
• PDFs are automatically generated and distributed via e-mail to vector control agencies every 2 weeks
• Risk calculated for each half-month using TOPS and surveillance data
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Culex pipiens risk
Culex tarsalis risk
Culex pipiens abundance
Culex tarsalis abundance
Culex pipiens MIR
Culex tarsalis MIR
Sentinel Chickens
Dead Birds
Temperature
Half-month
CMVSRP provides
nowcasts of WNV
transmission risk,
but more lead time
is needed
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Toward a forecasting model…
Vector abundance:
Culex tarsalis and the Culex pipiens complex
Phenology Climate (interannual) Land cover (spatial) Spatial and temporal dependence
Vector abundance Arbovirus transmission:
Culex tarsalis and WEEV Critical time windows?
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Study area & time period• 10 hydrologic regions
• 868 trap sites
• 10 years (1991—2000)
• Apr-Oct trapping season
New Jersey light traps
35,908 trap-months
http://w
ww
.ncm
vca.o
rg/
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Culex tarsalis & Climate• Diapause from Oct – Dec
• Termination and phenology climate variation dependent
• Important encephalitis virus vector in West
• Attracted to lights in rural areas
Barker et al., submitted
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Culex pipiens complex
• Abundance was highest in mid-late summer in the north,spring in the south
• Separate spring and summer peaks in the Central Valley
driven by urban rural production
• Abundance increases were delayed in regions with the coldest winters
Barker et al., submitted
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Model Structure
• Bayesian Poisson regression models fitted using MCMC in R and WinBUGS
• Models account for spatial and temporal autocorrelation among trap counts
• Adjustments in all models:– region-level annual abundance patterns (other predictors
explain departures from the regional means)– human population density as a surrogate for light competition
from non-trap sources
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• Best-fit model had a gradual decay in dependence within a neighborhood
– 1/distance weighting– 8-km neighborhood
• Consistent withpublished flight ranges
Radius = 8 km
Spatial dependence
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Temporal dependence
… J F M A M J J A S O N D J F M A M …
overwintering termwithin-season terms
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Low Temperature
High Temperature
Degree-days > 7.3ºC
Low & High Temperature
Late winter-early spring temperatures are important predictors
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California Water Supply
http://www.waterplan.water.ca.gov/
Water for Culex habitat:• Winter rainfall• Sierra Nevada snowpack
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Cx. pipiens complex
• Higher spring temperatures led to higher abundance
• Evidence for flushing effect of spring rains
– wet winter dry spring was ideal
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.5
1
2
4
Shasta-Cascade
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
San Francisco Bay
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Sacramento River
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.25
0.5
1
2
4
8
16
Central Coast
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.5
1
2
4
San Joaquin River
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
South Coast
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Tulare Lake
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Colorado River
A M J J A S O
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.5
1
2
4
Shasta-Cascade
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
San Francisco Bay
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Sacramento River
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.25
0.5
1
2
4
8
16
Central Coast
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.5
1
2
4
San Joaquin River
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
South Coast
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Tulare Lake
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Colorado River
A M J J A S O
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.5
1
2
4
Shasta-Cascade
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
San Francisco Bay
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Sacramento River
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.25
0.5
1
2
4
8
16
Central Coast
DDON DDDJ DDFMA PPTJFMA PPTMA JFMA
0.5
1
2
4
San Joaquin River
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
South Coast
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Tulare Lake
DDON DDDJ DDFMA PPTJFMAPPTMA JFMA
0.5
1
2
4
Colorado River
A M J J A S O
Rat
e ra
tio
fo
r a
1 d
egre
e/d
ay o
r 1
5-c
m in
crea
se
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Land cover
• National Land Cover Dataset
• Calculated area covered by each land cover class within buffer zones
1, 2, …, 10 km
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Model comparisons, land useHigh-intensity
residentialOrchards/ vineyards
Pasture/hay
Smallgrains
Commercial/industrial/
transportationGrasslands/herbaceous Row crops
Emergentherbaceous
wetlandsLow-intensity
residential
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Principal Components Analysis
• Based on 6 land cover classes from the National Land Cover Dataset
• PC1 separates rural from urban areas
• PC2 separates wetlands from agricultural areas
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Predicted Cx. tarsalis based on PC1
Central Coast
Sacramento River
Tulare Lake
Colorado River
North Coast
• Highest abundance in rural areas
• Unimodal in some areas, bimodal in others
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• Reeves (1971) proposed abundance thresholds for light trap counts that were related to the intensity of virus transmission
• Earlier study found a positive relationship between seasonal Cx. tarsalis abundance indices and incidence of WEEV in humans and sentinel chickens; reduction at highest abundance? (Olson 1977, Olson et al. 1979)
Olson et al. 1979 AJTMH
Q: When is mosquito abundance associatedwith virus transmission?
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Western equine encephalomyelitis virus (WEEV)
WEEV WEEV
Tangential
transmission
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Sentinel Chickens
• Considered abundance at fixed and lagged intervals prior to the bleeding date for sentinel chickens
Month
% s
ero
co
nv
ert
ed
S
S
S
S
S
SF F F F F
JAN FEB MAR APR MAY JUN JUL AUG SEP OCT
0
0.63
1.26
1.89
2.52
Central ValleyCoachella Valley
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Sentinel Chicken Data
41 flock sites in the Central and Coachella Valleys with a history of WEEV transmission
1992-2000
10 chickens per flock
Bled biweekly from
Apr [Jun] – Oct and
tested for IgG to WEEV
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Sentinel Chicken Flocks
• Specific indicators of arbovirus transmission• Paired with a nearby NJ-style light trap• Delay of 8+ days from
transmission seroconversion(Reisen 1994 JAMCA)
http://www.wuvcd.org
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• Need adjustment for temperature and landscape composition
Cx. tarsalis abundance
WEEV Transmission
Vector-Host Contact Rate
Vector selectivity of host
Length of gonotrophic cycle
Biting Frequency
Viral Replication Rate (EIP)
Temperature
Population Vector
Competence
Viral Genotypes
Adult Mosquito Survival
Competing Light
Humidity
Mosquito Development
Rate
Trap Sensitivity
Larval Mosquito Control
Passerine bird abundance
Previous years’
precipitation
Amount of H2O in reservoirs
prior to season
Irrigation Decisions
Spring Snowmelt
Winter Snowpack
Winter Rainfall
Aquatic Larval Habitat
Landscape Composition
WEEV Prevalence
in Birds
Vector abundance vs. WEEV transmission
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Model Structure
• Bayesian logistic regression models
• θi represent terms for variation in transmission probabilities among flocks
• ωit represent temporal connections from each half-month to the next within a season
itiqiqiiit XXp ...)(logit 110
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Parameters ProcessHyperparameters Data
Mosquito Counts From Traps
COUNTi[t-42,t-29d]
Daily Minimum TemperaturesTMINi[t-21,t-8d]
Daily Maximum TemperaturesTMAXi[t-49,t-36d]
Observed Chicken Seroconversions
yit
Probability of virus
transmission to chickens
pit
Regression parameters
α , β
Flock-level parameters
θi
Temporal parameters
ωit
Among-flock variance
σ2
Variance parameter
τ2
Auto-regressive parameter
γ
Model Structure
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Sentinel Chicken Flocks
• Cx. tarsalis abundance 4-6 wks prior to bleeding date resulted in the best model fit and strongest association with seroconversion probabilities
De
via
nce
In
form
atio
n C
rite
rio
n
-30
-20
-10
01
.21
.31
.41
.51
.61
.71
.8
Time lag
Od
ds R
atio
fo
r a
2X
in
cre
ase
in C
x. ta
rsa
lis fe
ma
les
56-43 d 49-36 d 42-29 d 35-22 d 28-15 d 21-8 d
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16.717
17.417.8
18.218.9
19.720.7
22.324.7
14
1726
3552
80125
207335
671
0.005
0.010
0.015
Tmin1-3 wk lag
Cx. tarsalis4-6 wk lag
33.934.3
34.835.2
35.636.1
36.737.3
3838.8
14
1726
3552
80125
207335
671
0.001
0.002
0.003
0.004
0.005
0.006
Tmax5-7 wk lag
Cx. tarsalis4-6 wk lag
Central Valley
Probabilities of seroconversion
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Coachella Valley
16.717
17.417.8
18.218.9
19.720.7
22.324.7
14
1726
3552
80125
207335
671
0.005
0.010
0.015
Tmin1-3 wk lag
Cx. tarsalis4-6 wk lag
41.942.2
42.542.8
43.143.3
43.643.9
44.245
14
1726
3552
80125
207335
671
0.001
0.002
0.003
0.004
Tmax5-7 wk lag
Cx. tarsalis4-6 wk lag
Probabilities of seroconversion
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Conclusion
• Combination of warmer temperatures and elevated Cx. tarsalis abundance 4-6 weeks prior to the chicken sampling date (3-5 wks prior to the transmission event) resulted in the highest probability of virus transmission to sentinel chickens
Time lag (weeks)
Transmission
TMAX TMIN
Sampling
Date
Cx. tarsalis
abundance
-1-2-3-4-5-6-7
Time lag (weeks)
Transmission
TMAX TMIN
Sampling
Date
Cx. tarsalis
abundance
Cx. tarsalis
abundance
-1-2-3-4-5-6-7
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• Colorado
– Spatiotemporal models of mosquito abundance and WNV infection rates from Rocky Mountain foothills to plains
• Washington
– Mosquito testing and reporting via the CalSurv Gateway (version 2 “pilot program”)
• Singapore?– Collaboration with NTU and NEA to share tools
and models from the CA WNV decision support system to be adapted for dengue
Extension to other areas
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Work with Colorado State University
• Mosquitoes and WNV sampled along a gradient from the Rocky Mountain foothills into the plains
• Models constructed using habitat/climate predictors, including TOPS temps, precip
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• ArboNET
– WK Reisen is academic representative to ArboNET Evaluation Working Group
– CA data regularly exported from CalSurvGateway to ArboNET
• New UCD/CDPH/CDC project on integrated population-based surveillance for WNV
– Compare surveillance measures as predictors of human West Nile cases at sentinel sites
– CalSurv Gateway as model for data collection
Work with CDC
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Gateway 2.0• Spatial capabilities of PostgreSQL and PostGIS
• Integration of Google Maps
• Will permit users to group and query data spatially using “point-and-click” polygon definition
• Currently used in Washington, will be delivered to all of California by the end of 2009
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Gateway 2.0
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51
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Final year plans
• Months-in-advance forecasting of mosquito abundance using TOPS, RS data
• Gateway 2.0– BK Park invited to present Gateway at Southeast
Regional Public Health & Vector Management Conference in Florida
• Survey of vector control and public health agencies re: usage of response plan and CalSurv Gateway