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Transcript of Information Systems Basic Core Specialization Clinical Imaging BioInformatics Public Health Computer...
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Informatics Informatics Methods in Methods in
Biomedicine: Biomedicine:
Foundations of a Foundations of a ProfessionProfession
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
ClinicalClinical
PreclinicalPreclinical
Post-docPost-doc
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
FormalFormal
Mathematical, Mathematical, technicaltechnical
•OntologyOntology•Database Database theorytheory•Signal Signal processingprocessing•Sequence Sequence analysisanalysis•Formal Formal grammarsgrammars•Process modelsProcess models•Software Software engineeringengineering
AppliedApplied
A core set of A core set of methods for methods for implementing implementing and evaluating and evaluating solutionssolutions
•Deployment Deployment methodsmethods•Implementation Implementation issuesissues•Assess impactAssess impact
EmpiricalEmpirical
Cognitive, Cognitive, behavioral, behavioral, organizationalorganizational
•Experimental Experimental designdesign•Data modelingData modeling•VisualizationVisualization•Decision Decision analysisanalysis•Project Project managementmanagement•User interfaceUser interface
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Computer ScienceComputer Science
Can apply computational techniques to Can apply computational techniques to manage data,develop software and solve manage data,develop software and solve problemsproblems
• Database SystemsDatabase Systems
• Machine LearningMachine Learning
• Programming and Problem SolvingProgramming and Problem Solving
• Advanced Software EngineeringAdvanced Software Engineering
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
StatisticsStatistics
Can apply mathematical techniques to analyze Can apply mathematical techniques to analyze data and test hypothesesdata and test hypotheses
• Introduction to BiostatisticsIntroduction to Biostatistics
• Introduction to Biostatistical MethodsIntroduction to Biostatistical Methods
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
BiomedicalBiomedical
Is conversant with concepts, terminology, Is conversant with concepts, terminology, institutions, professionals, and methods of institutions, professionals, and methods of
biomedical domainbiomedical domain
• Biochemistry and Molecular BiologyBiochemistry and Molecular Biology
• Acculturation to MedicineAcculturation to Medicine
• PhysiologyPhysiology
• EpidemiologyEpidemiology
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Informatics KnowledgeInformatics Knowledge
Is familiar with theories and results in Medical Is familiar with theories and results in Medical Informatics, and able to apply basic methods Informatics, and able to apply basic methods
to solve problemsto solve problems
• Methods in Medical Informatics (logic, Methods in Medical Informatics (logic, decision science, cognitive science)decision science, cognitive science)
• Introduction to Medical Informatics Introduction to Medical Informatics ApplicationsApplications
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Informatics MethodsInformatics Methods• LogicLogic
• Formal GrammarsFormal Grammars
• OntologyOntology
• Database theoryDatabase theory
• Decision TheoryDecision Theory
• Cognitive AnalysisCognitive Analysis
• Process ModelsProcess Models
• Measurement TheoryMeasurement Theory
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Data RepresentationData Representation
Can analyze, develop, and apply Can analyze, develop, and apply representations of biomedical datarepresentations of biomedical data
• Representation and Coding of Medical DataRepresentation and Coding of Medical Data
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Information SystemsInformation Systems
Can analyze, develop, deploy and manage Can analyze, develop, deploy and manage complex information systemscomplex information systems
• Health Information Systems ArchitectureHealth Information Systems Architecture
• Introduction to Information ManagementIntroduction to Information Management
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Information Information PresentationPresentation
Can analyze, develop, and deploy visual Can analyze, develop, and deploy visual presentations of biomedical informationpresentations of biomedical information
• User Interfaces in MedicineUser Interfaces in Medicine
• Understanding InformationUnderstanding Information
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Decision MakingDecision Making
Can analyze, develop, and apply formal models Can analyze, develop, and apply formal models of biomedical decision makingof biomedical decision making
• Quantitative Models for Medical Decision Quantitative Models for Medical Decision Making and Clinical SupportMaking and Clinical Support
• Cognitive Sciences and Medical InformaticsCognitive Sciences and Medical Informatics
• Social and Economic Factors in Clinical Social and Economic Factors in Clinical Decision MakingDecision Making
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
EvaluationEvaluation
Can analyze, plan and carry out formal Can analyze, plan and carry out formal evaluations of information systemsevaluations of information systems
• Evaluation Methods in Medical InformaticsEvaluation Methods in Medical Informatics
• Design of Medical ExperimentsDesign of Medical Experiments
• Introduction to Sociomedical Sciences Introduction to Sociomedical Sciences
Research MethodsResearch Methods
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Clinical Application Clinical Application DomainDomain
• Economics of InformaticsEconomics of Informatics
• Project ManagementProject Management
• Interactive Health CommunicationsInteractive Health Communications
• Introduction to Databases and Data MiningIntroduction to Databases and Data Mining
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Imaging Application Imaging Application DomainDomain
• Biomedical ImagingBiomedical Imaging
• Analysis and Quantification of Medical Analysis and Quantification of Medical ImagesImages
• Wavelet ApplicationsWavelet Applications
• Computation Neural Modeling and Computation Neural Modeling and NeuroengineeringNeuroengineering
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Bioinformatics Bioinformatics Application DomainApplication Domain
• Intro to GenomicsIntro to Genomics
• Computation GenomicsComputation Genomics
• Sequence AnalysisSequence Analysis
• Microarrays and Regulatory NetworksMicroarrays and Regulatory Networks
• Biological DatabaseBiological Database
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Public Health Public Health Application DomainApplication Domain
• Use of Large Scale national health care data Use of Large Scale national health care data setssets
• Hospital Organization and ManagementHospital Organization and Management
• Health CommunicationsHealth Communications
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Applying Bioinformatics Knowledge to Research Areas
BiomedicalKnowledge
BiomedicalData
KnowledgeBase
InferencingSystem
DataBase
DataAcquisition
BiomedicalResearch
Planning &Data Analysis
KnowledgeAcquisition
TeachingHumanInterface
TreatmentPlanning
DiagnosisInformationRetrieval
ModelDevelopment
ImageGeneration
Real-time acquisitionImagingSpeech/language/textSpecialized input devices
Machine learningText interpretationKnowledge engineering
Basic ResearchBasic Research Informatics Informatics ChallengesChallenges ApplicationsApplications
ClinicalClinical
Coding, data structures, high performance computing
Vocabularies, automated retrieval from repositories
Distributed medical records, clinical trials, teledentistry
ImagingImaging
3-D modeling, visualization, data representation
Ontology-based ref models and classification
3-D anatomy atlases, radiological diagnosis
BioinformaticBioinformaticss
Biochips, algorithms for DNA sequencing, patient specific drugs
Linking genomic and patient data, security, ethics
Genetic-based patient records and protocols
Public HealthPublic Health
Databases, searching, data analysis theories and algorithms
Integration and validation of info, knowledge discovery
Data mining, citizen-based services
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation
Thanks to Thanks to
Dr. Stephen B. JohnsonDr. Stephen B. Johnson
Dr. Ted ShortliffeDr. Ted Shortliffe
Information SystemsInformation Systems
Basic
Basic
Core
Core
Sp
ecia
liza
tiS
pecia
liza
tion
on
ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health
Computer ScienceComputer Science
MethodsMethods(formal models)(formal models)
BiomedicalBiomedical
Decision MakingDecision Making
Information PresentationInformation Presentation
StatisticsStatistics
Data RepresentationData Representation
EvaluationEvaluation