In praise of grumpy old men: Open versus closed data and the challenge of creating a 21st century...
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In praise of grumpy old men
@rdmpagehttp://iphylo.blogspot.comChair @GBIF Science Committee
#fm10ed
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Leon Croizat Tracks=Panbiogeography
Gary Nelson & Norm PlatnickPhylogeny+ geography= cladistic biogeography
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Ted Nelson Hyperlinks and hypermediaTwo-way links and “transclusion”= Xanadu
Tim Berners-LeeHTTP, URL, HTMLOne-way links= world wide web
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Web page Other web page
Web linking, one way, document-level, “target” doesn’t know that it is linked to (“cited”), link can break (404)
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text
Work Source
text
Xanadu linking, two way, fragment-level, “source” knows it is linked to, source content is embedded, links don’t break
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Xanadu
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Wait, WTF has this to do with floras?!
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What is a flora?
• Draw polygon (shape) on map
• Get list of all species within that polygon
• Get original descriptions/revisions for those species
• Add locally relevant information
• Mash together (“mashup”), and we’re done!
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iSpecies.org for Horsfieldia
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A New Account of the Genus Horsfieldia (Myristicaceae), Pt 2W J J O De WildeThe Gardens' bulletin, Singapore 38(1): 55-144 (1985)
http://biostor.org/reference/175018
Horsfieldia lancifolia
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Flora Malesiana. Series I - Seed Plants, Volume 14. Myristicaceae
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DescriptionDescription
Flora Article
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Embedding text and images
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Embedding data
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van Balgooy 3973
van Balgooy 3973
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Description
Article Specimen
{"key": 1139234988,"scientificName":
"Horsfieldia lancifolia W.J.J.O. de Wilde","kingdom": "Plantae","phylum": "Tracheophyta","order": "Magnoliales","family": "Myristicaceae","genus": "Horsfieldia","species": "Horsfieldia
lancifolia","genericName":
"Horsfieldia","specificEpithet":
"lancifolia","taxonRank": "SPECIES","decimalLongitude": 121.75,"decimalLatitude": -2.25,"continent": "ASIA","stateProvince": "Sulawesi","year": 1979,"month": 7,"day": 11,"occurrenceID":
"http://data.biodiversitydata.nl/naturalis/specimen/L.1769594”}
Data
(GBIF)
Data
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Xanadu in the 21st century?
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text
Article Annotations
table
annotation
annotation
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@hypothes_is
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Annotating a scientific paper
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Aggregating annotations (iPhylo)http://iphylo.blogspot.co.uk/2016/06/aggregating-annotations-on-scientific_30.html
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Deep linking requires a culture of being open
@okfn
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www.theplantlist.org
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You may not alter, transform, or build upon this work
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The Plant List 1.1
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http://doi.org/10.15468/btkum2
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Open versus closed data and the challenge of creating a 21stC flora
1. Data needs to be open (e.g., scientific names – IPNI, I’m looking at you)
2. Scientific literature needs to be open access (taxonomists I’m looking at you)
3. Question: How do we make (1) and (2) happen?