Immunological bioinformatics course the immune system and...

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The immune system and its diseases Gunnar Houen Professor, Dr. scient. Statens Serum Institut

Transcript of Immunological bioinformatics course the immune system and...

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The immune system and its diseases

Gunnar Houen

Professor, Dr. scient.

Statens Serum Institut

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Why do we have an

immune system ?

Lymph nodes

Tonsils

Thymus

Spleen

Intestine

Bone marros

Blood

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Thymus

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Lymph nodes and spleen

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Intestinal immune system

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Pathogens = non self

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Immune system

Tissues (self)

Pathogens (non-self)

Immune system

GH

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Defence against pathogens

§  Physical barriers §  Shedding (flow) §  Immune system §  Hygiene §  Isolation §  Antibiotics §  Surgery

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Infection

Self Non self Immune system

Infection

GH

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Immune system function

Self Non-self Innate Adaptive

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Innate Immunity Adaptive Immunity

No memory

No time lag

(Not antigen specific)

A lag period

Antigen specific

Memory

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Immuneresponse - timecourse

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Immune responses

§  Pathogen killing (innate)

§  Infected cell killing (innate, adaptive)

§  Antigen removal (innate, adaptive)

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Innate/adaptive immune system

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Extracellular immune system

§  Innate: C’, N, M, NK, D, Ma, Ba, E, NKT, IgM, IgD,

§  Adaptive: IgG, IgA, IgE, T, B,

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Intracellular immune system

§  Innate: Inflammasomes, RNAse, proteases (autophagy), ……

§  Adaptive: miRNAs ?

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Early innate: Complement

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Later innate: (PM)N

Polymorphonuclear cells

Neutrophilic granulocyte

Most Abundant White Blood Cell

Very Short Lifetime (1 – 3 days)

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Late innate: NK cells

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Immune system

Pathogens

Immune evolution/evasion

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Immune evasion strategies

Immune system

Pathogens

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Antistoffer – det humorale immunforsvar

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Antistoffer – det humorale immunforsvar

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Antistoffer

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Immunologiske feed-back loops

T4

Ag

Ab

D/M

B

Ab

MHC II Cytokiner

MHC II Cytokiner

GH

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Infection

Self Non self Immune system

Infection

GH

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Pathogen strategies

Extracellular Intracellular

§  Viruses - +

§  Bacteria + +

§  Fungi + +

§  Parasites + +

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Pathogen occurrence

Extracellular Intracellular

§  Viruses + +

§  Bacteria + +

§  Fungi + +

§  Parasites + +

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Immune responses

§  Pathogen killing (innate)

§  Infected cell killing (innate, adaptive)

§  Antigen removal (innate, adaptive)

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Antigens

§  Proteins §  Carbohydrates §  Lipids §  Nucleic acids §  Haptens

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§  Cellular immune system

N, E, Ma, Ba, NK, D, M, T, B, NKT, …..

§  Humoral immune system

C’, PAMPARs, Abs

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Cellular immune system

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Antigen-presenting cells

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Dendritic cells

Receptor-mediated Ag uptake (pM - nM conc.)

When Ag is captured ability to capture Ag declines

http://www.rcsed.ac.uk/Journal/vol46_1/4610003.htm#INTRODUCTION

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Dendritic cells in skin

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Dendritic cells in lymph nodes

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Innate immune responses

§  Antigen detection: PAMPs

§  Pathogen killing: C’, N,

§  Infected cell killing: NK

§  Antigen removal (Ag-driven)

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Adaptive immune responses

§  Antigen removal

§  Infected cell killing §  Antigen nature and location determines

the immune response

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Roy, 2003 (www)

Endogenous and Exogenous Antigen Presenting Pathways

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Immunological feed back loops

Extracellular antigens

T4

Ag

Ab

D/M

B

Ab

MHC II Cytokines

MHC II Cytokines

GH

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Immunological feed back loops

Intracellular antigens

T8

Ag D/M

C

MHC I Cytokines

MHC I Cytokines

GH

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Antigen nature and location/uptake determines the antigen processing pathway used

Cytosolic compartment Endogenous processing

(Viral antigens)

Vesicular Compartment Contiguous with extracellular fluid

Exogenous processing (Streptococcal, Mycobacterial antigens)

INTRACELLULAR REPLICATION

EXTRACELLULAR OR INTRAVESICULAR (ENDOSOMAL) REPLICATION

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Figure 5-2

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Adaptive Immunity = T, B lymphocytes