Method for tracking orthogonal ribosomes in vivo using MS2 ...
How to Get Started Tracking Scholarly Activity with VIVO and SHARE
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Transcript of How to Get Started Tracking Scholarly Activity with VIVO and SHARE
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March 21, 2016 Hot Topics: DuraSpace Community Webinar Series
Hot Topics: The DuraSpace Community Webinar Series
Series Thirteen: VIVO plus SHARE:
Closing the Loop on Scholarly Activity
Curated by Rick Johnson, Visiting Program Officer for SHARE at the
Association of Research Libraries
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March 21, 2016 Hot Topics: DuraSpace Community Webinar Series
Webinar 3:
How to Get Started Tracking Scholarly Activity with VIVO and SHARE
Presented by:
Erin Braswell, Infrastructure Developer, SHARE - Center for Open Science
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Technology, CommunityErin Braswell, DeveloperCenter for Open Science
March 21, 2016
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Mission
SHARE is a higher education initiative whose mission is to maximize research impact by making research widely accessible, discoverable, and reusable.
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Mission
SHARE is a higher education initiative whose mission is to maximize research impact by making research widely accessible, discoverable, and reusable. To fulfill this mission SHARE is building a free, open data set about research and scholarly activities across their life cycle.
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NotifyProviders Consumers
Gather
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Notify104 Providers Consumers
Gather
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https://osf.io/share/registration
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Technology - scrAPI
Celery
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GETstcloud.edu/api/
Process Raw Data
Normalize Data
Process Request and Response
Data Pipeline
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GETstcloud.edu/api/
Process Raw Data
Normalize Data
Process Request and Response Archive Request
Archive Response
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GETstcloud.edu/api/
Process Raw Data
Normalize Data
Process Request and Response Archive Raw Data
Postgres Storage
Web API Access
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GETstcloud.edu/api/
Process Raw Data
Normalize Data
Process Request and Response
Archive Normalized Data
Postgres elasticsearch
Web API Access
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https://osf.io/t3j94/
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How are we getting data?ApplicationProgrammingInterface
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https://osf.io/api/v1/share/documents/
Beta: access RAW and NORMALIZED docs
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https://osf.io/api/v1/share/search/
Search - powered by elastic
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Current Provider Information
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Full elasticsearch DSL
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...including aggregations
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Results- An excellent insight into how we can
improve
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https://github.com/CenterForOpenScience/scrapi/blob/develop/scrapi/harvesters/vivo.py
Diving into VIVO Harvester Code...
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https://github.com/CenterForOpenScience/scrapi/blob/develop/scrapi/settings/defaults.py
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Steps to Harvest From Your VIVO● Register as a provider as shown earlier● COS will contact you● COS will use the VIVO harvester as a
template to create a harvester for your VIVO● You provide the attributes defined within the
VIVO settings
Test and Go!
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All code is open source!
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Thank you!
SHARE Documentation: https://osf.io/t3j94/SHARE Tutorials: https://osf.io/bygau/These Slides: https://osf.io/yg3xj/