Hemoglobin – 3D Structure
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Transcript of Hemoglobin – 3D Structure
HemoglobinPresented to Bioinformatic MN1 10 p course, Spring term 2006 by Amirah Khan
With acknowlegment to Miriam Geörg & Björn Garpefjord
Hemoglobin – 3D Structure
Tetrameric complex 22
Chain A = Chain C
Chain B = Chain D
1 heme group per subunit/chain
CATH Classification
C Mainly Alpha (1)
A Orthogonal Bundle
T Globin-like
H Globin
How may the structure of hemoglobin be stabilised?
N-capping of helices
Helix: Ala53 – Ala71
• Removal of Ala53
• Replaced by Asp, negatively charged
Reduced dipole moment
• Reduced dipole moment in helix
• Indication of H-bond to Gly57
• More stable?
N-capping of helices
Reducing the Flexibility of the Main Chain
Stabilization of exposed loop by mutating Gly to Pro
Mutation: G51 P
Stabilizing the Quartenary Structure
The hemoglobin tetramer consists of 2 dimers.
The interface between those 2 dimers is important for flexibility and funcionality.
Stabilization of the dimers by creation of disulfide-bonds between the subunits
Mutations:
chain: Ala 123 Cys
chain: Val 33 Cys
Stabilizing the Quartenary Structure
Stabilizing the Hydrophobic Core
The main pocket of each chain is occupied by the heme group which is essential for function.
Mutations in these pockets might interfer with heme binding and thus oxygen transport.
Increasing the Oxygen - Affinity
In nature there exist different forms of hemoglobin:
• Adult hemoglobin (22)
• Fetal hemoglobin (22) with higher oxygen affinity
Increase of Oxygen Affinity by mutating the aa’s close to the coordinative His 92 to the corresponding aa’s in fHb
Coordinative Histidine
Increasing the Oxygen - Affinity
Stabilization vs Flexibility
Stabilized Structure
• Industrial Applications?
Conserved Structure
• Optimized by evolution!!!• Flexibility of subunits needed for
protein function– Induced fit: conformational
change after binding of first O2 leads to increased affinity for following O2 molecules
– Large pockets occupied by essential heme group
• Single aa exchange in Sickle Cell Anemia causes aggregation of hemoglobin