GRM 2014: Arllet Portugal on Data Management Activities
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Transcript of GRM 2014: Arllet Portugal on Data Management Activities
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IBP Data Management Status
IBP DM Team Presenter – Arllet M. Portugal
October 2014
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Major Activities
Migration of databases to IBDB v2 Documentation of Other Traits Establishment of other crop databases Development of Data Import Tool with
Leafnode for loading data Re-organization of the crop DB scripts in
preparation for different kinds of crop DB installers
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Migration of Databases
Evaluation data from Maize Finder were migrated to IBDB v2 maize crop DB
Australia-India Molecular Breeding Project
(AIMBP) Database (Project central and Univ of Sydney local)
Sorghum RI phenotyping data (P114 in 2010 & P118 in 2011) reloaded
Cassava RI Database managed by NRCRI
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Tropical Legumes 1 – Beans (28 datasets) Tropical Legumes 1 - Chickpea (around 15
datasets) re-loaded by Prasad Peteti ICRISAT Groundnut – migration of 12
international trials & 14 post-rainy datasets from Agrobase to IBDB v2
Migration of Databases
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Migration of databases
Rice RI database – updated by Ibnou Dieng Wheat RI, China data loaded using the Data
Import Wheat RI, India (1 Excel file for 2011-2012 and 5
excel files for 2012-2013 with multiple sheets ) – in the process of loading
MAGIC Population S4 Phenotype– loaded using
the Data Import
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Documentation of Other Traits
Complementary Traits for the following crops: Cassava, chickpea, common bean, cowpea Groundnut, maize, sorghum, soybean, wheat
Traits from Crop Ontology for the following crops Sweet potato, potato, yam pigeon pea, barley
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Establishment of Other Crop Databases
Crop databases are already created for Lentil Soybean Pearl Millet
Crop databases to be available for Sweet Potato Potato Barley Pigeon Pea Yam
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Data Import Tool A tool to import historical dataset
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Re-organization of the Crop DB scripts
One script for Common terms used by all crops which consist of traits common to all crops and terms needed by BMS
Script for crop specific traits Script for germplasm information from the CG
center Script for evaluation data from CG centers Script for genotyping data generated through
GCP projects and IBP genotyping service
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Other IBP DM Team Members
Graham McLaren Clarissa Pimentel Julian Pietragalla Ma. Teresa Ulat Corina Habito Fernando Rojas Rowena Valerio