BRKMPL-1261 IP Multicast - Concepts, Design and Troubleshooting
GO-Slim term : ProcessCluster frequency total proteinsCluster frequencyGenes annotated to the term...
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Transcript of GO-Slim term : ProcessCluster frequency total proteinsCluster frequencyGenes annotated to the term...
GO-Slim term : Process Cluster frequency total proteins Cluster frequency Genes annotated to the term
regulation of biological process 321 out of 1261 genes, 25.5% 20 out of 55 genes, 36.4% 0.02146784 ACO1, ACT1, AHP1, CDC12, CDC48, ERG1, FBA1, HSP60, HSP70, HSP90, LPD1, MET6, PFY1, PIN3, SSB1, SSC1, TIM9, TPI1, TRX1, orf19.5281
transport 251 out of 1261 genes, 19.9% 16 out of 55 genes, 29.1% 0.03031356 ACT1, ATP5, CDC48, FBA1, HSP60, HSP70, NTF2, PFY1, PMM1, RPS3, SSA2, SSB1, SSC1, TEF1, TIM9, TRX1
response to stress 241 out of 1261 genes, 19.1% 16 out of 55 genes, 29.1% 0.02291991 ACT1, AHP1, CDC48, ERG1, HSP60, HSP70, HSP90, MET6, NOC2, PHR1, RHR2, SSA2, SSB1, TPI1, TRX1, orf19.5281
organelle organization 286 out of 1261 genes, 22.7% 15 out of 55 genes, 27.3% 0.08839355 ACO1, ACT1, CDC12, CDC48, HSP60, HSP90, PFY1, PMM1, RIM1, SSA2, SSC1, TIM9, TPM2, TRX1, orf19.5281
response to chemical 195 out of 1261 genes, 15.5% 12 out of 55 genes, 21.8% 0.05928833 ACT1, AHP1, CDC48, ERG1, HSP70, HSP90, NOC2, PHR1, RPL17B, SSA2, TRX1, orf19.5281
filamentous growth 140 out of 1261 genes, 11.1% 11 out of 55 genes, 20% 0.02000988 ACT1, CDC12, ERG1, HSP90, LPD1, NOC2, PHR1, SSB1, TPI1, TPM2, TRX1
generation of precursor metabolites and energy 66 out of 1261 genes, 5.2% 10 out of 55 genes, 18.2% 0.0002798767 ACO1, COX5, FBA1, FUM11, FUM12, GPM1, MAM33, PDC11, QCR2, TPI1
interspecies interaction between organisms 40 out of 1261 genes, 3.2% 10 out of 55 genes, 18.2% 3.016133e-06 ACO1, FBA1, GPM1, HSP70, MET6, PHR1, SSA2, SSB1, TEF1, TPI1
carbohydrate metabolic process 96 out of 1261 genes, 7.6% 9 out of 55 genes, 16.4% 0.01304901 FBA1, GPM1, PDC11, PHR1, PMM1, RHR2, TAL1, TKL1, TPI1
cell cycle 127 out of 1261 genes, 10.1% 7 out of 55 genes, 12.7% 0.132987 ACT1, CDC12, CDC48, LPD1, PFY1, TPM2, orf19.5281
translation 135 out of 1261 genes, 10.7% 7 out of 55 genes, 12.7% 0.1456061 HCR1, RPL17B, RPP2B, RPS3, SSB1, TEF1, orf19.3690.2
cellular respiration 39 out of 1261 genes, 3.1% 6 out of 55 genes, 10.9% 0.004525711 ACO1, COX5, FUM11, FUM12, MAM33, QCR2
protein folding 50 out of 1261 genes, 4% 6 out of 55 genes, 10.9% 0.01402609 HSP60, HSP70, HSP90, SSA2, SSB1, SSC1
cytoskeleton organization 62 out of 1261 genes, 4.9% 5 out of 55 genes, 9.1% 0.07984212 ACT1, CDC12, CDC48, PFY1, TPM2
response to drug 88 out of 1261 genes, 7% 5 out of 55 genes, 9.1% 0.1577981 ERG1, HSP90, NOC2, PHR1, RPL17B
cytokinesis 33 out of 1261 genes, 2.6% 4 out of 55 genes, 7.3% 0.03949144 ACT1, CDC12, PFY1, TPM2
biological process unknown 136 out of 1261 genes, 10.8% 4 out of 55 genes, 7.3% 0.13688 AHP2, RCT1, orf19.4609, orf19.5676
hyphal growth 39 out of 1261 genes, 3.1% 3 out of 55 genes, 5.5% 0.1539067 ACT1, CDC12, PHR1
conjugation 25 out of 1261 genes, 2% 3 out of 55 genes, 5.5% 0.07093105 PFY1, TPM2, orf19.5281
ribosome biogenesis 104 out of 1261 genes, 8.2% 3 out of 55 genes, 5.5% 0.1678977 HCR1, RPS3, SSB1
cellular homeostasis 47 out of 1261 genes, 3.7% 3 out of 55 genes, 5.5% 0.1926411 AHP1, LPD1, TRX1
vesicle-mediated transport 77 out of 1261 genes, 6.1% 3 out of 55 genes, 5.5% 0.2299261 ACT1, PMM1, TRX1
cell adhesion 17 out of 1261 genes, 1.3% 2 out of 55 genes, 3.6% 0.1328706 PHR1, RHR2
cell wall organization 42 out of 1261 genes, 3.3% 2 out of 55 genes, 3.6% 0.2801906 ACT1, PHR1
cellular protein modification process 86 out of 1261 genes, 6.8% 2 out of 55 genes, 3.6% 0.1622587 ACT1, TRX1
biofilm formation 33 out of 1261 genes, 2.6% 2 out of 55 genes, 3.6% 0.255921 PHR1, RHR2
RNA metabolic process 164 out of 1261 genes, 13.0% 2 out of 55 genes, 3.6% 0.01428547 HCR1, SSB1
signal transduction 42 out of 1261 genes, 3.3% 2 out of 55 genes, 3.6% 0.2801906 HSP90, orf19.5281
DNA metabolic process 72 out of 1261 genes, 5.7% 2 out of 55 genes, 3.6% 0.2156223 ACT1, HSP90
pathogenesis 64 out of 1261 genes, 5.1% 2 out of 55 genes, 3.6% 0.2445914 HSP90, PHR1
nucleus organization 20 out of 1261 genes, 1.6% 1 out of 55 genes, 1.8% 0.3771988 PMM1
pseudohyphal growth 12 out of 1261 genes, 1% 1 out of 55 genes, 1.8% 0.322641 TPM2
protein catabolic process 71 out of 1261 genes, 5.6% 1 out of 55 genes, 1.8% 0.131991 CDC48
lipid metabolic process 55 out of 1261 genes, 4.4% 1 out of 55 genes, 1.8% 0.213801 ERG1
can not be mapped to a GO slim term 149 out of 1261 genes, 11.8% 7 out of 55 genes, 12.7% 0.1596781 APE2, GRP2, LSC1, RNR21, orf19.2244, orf19.3175, orf19.5517
GO-Slim term: Component Cluster frequency total proteins Cluster frequency Genes annotated to the term
cytoplasm 1006 out of 1261 genes, 79.8%
51 out of 55 genes, 92.7% 0.005023286
ACO1, ACT1, AHP1, APE2, ATP5, CDC12, CDC48, COX5, ERG1, FBA1, FUM11, FUM12, GPM1, GRP2, HCR1, HSP60, HSP70, HSP90, LPD1, LSC1, MAM33, MET6, NOC2, NTF2, PDC11, PFY1, PIN3, PMM1, QCR2, RCT1, RHR2, RIM1, RNR21, RPL17B, RPP2B, RPS3, SSA2, SSB1, SSC1, TAL1, TEF1, TIM9, TKL1, TPI1, TPM2, TRX1, orf19.3175, orf19.3690.2,
orf19.4609, orf19.5281, orf19.5676
mitochondrion 347 out of 1261 genes, 27.5% 24 out of 55 genes, 43.6% 0.003596512 ACO1, APE2, ATP5, CDC48, COX5, FBA1, FUM11, GPM1, HSP60, HSP90, LPD1, LSC1, MAM33, NOC2, QCR2, RCT1, RIM1, SSA2, SSC1, TEF1, TIM9, TPI1, TRX1, orf19.3175
nucleus 556 out of 1261 genes, 44.1% 23 out of 55 genes, 41.8% 0.104445 ACT1, CDC48, FBA1, GPM1, GRP2, HSP70, MET6, NOC2, NTF2, PDC11, PFY1, PIN3, PMM1, RHR2, RNR21, TAL1, TEF1, TIM9, TKL1, TPI1, TRX1, orf19.3690.2, orf19.5676
membrane 343 out of 1261 genes, 27.2% 22 out of 55 genes, 40% 0.01237556 ACT1, AHP1, ATP5, CDC48, COX5, ERG1, FBA1, HSP70, HSP90, MET6, PDC11, PFY1, PHR1, QCR2, RCT1, SSA2, SSB1, SSC1, TIM9, TKL1, TPI1, orf19.5281
plasma membrane 170 out of 1261 genes, 13.5% 17 out of 55 genes, 30.9% 0.0003360052 AHP1, CDC48, COX5, ERG1, FBA1, HSP70, HSP90, MET6, PDC11, PFY1, PHR1, QCR2, SSA2, SSB1, SSC1, TKL1, TPI1
cell wall 65 out of 1261 genes, 5.2% 15 out of 55 genes, 27.3% 2.047743e-08 AHP1, APE2, FBA1, GPM1, HSP70, HSP90, MET6, PDC11, PHR1, SSA2, SSB1, SSC1, TEF1, TKL1, TPI1
mitochondrial envelope 113 out of 1261 genes, 9% 8 out of 55 genes, 14.5% 0.06058599 ATP5, CDC48, COX5, GPM1, QCR2, SSC1, TIM9, TRX1
extracellular region 62 out of 1261 genes, 4.9% 8 out of 55 genes, 14.5% 0.003217363 APE2, LPD1, MET6, PHR1, RPL17B, TAL1, TEF1, orf19.4609
ribosome 113 out of 1261 genes, 9% 6 out of 55 genes, 10.9% 0.1540328 CDC48, RCT1, RPL17B, RPP2B, RPS3, orf19.3690.2
cell cortex 48 out of 1261 genes, 3.8% 5 out of 55 genes, 9.1% 0.03821097 ACT1, CDC12, PFY1, PIN3, TPM2
cytoskeleton 56 out of 1261 genes, 4.4% 4 out of 55 genes, 7.3% 0.1324179 ACT1, CDC12, PIN3, TPM2
site of polarized growth 66 out of 1261 genes, 5.2% 4 out of 55 genes, 7.3% 0.1683337 ACT1, CDC12, CDC48, TPM2
cellular bud 53 out of 1261 genes, 4.2% 4 out of 55 genes, 7.3% 0.1201694 ACT1, CDC12, PHR1, TPM2
endoplasmic reticulum 80 out of 1261 genes, 6.3% 3 out of 55 genes, 5.5% 0.2256669 CDC48, ERG1, orf19.5281
cellular component unknown 6 out of 1261 genes, 0.5% 3 out of 55 genes, 5.5%
0.001386456 AHP2, orf19.2244, orf19.5517
vacuole 35 out of 1261 genes, 2.8% 3 out of 55 genes, 5.5% 0.131115 ERG1, SSA2, TRX1
endomembrane system 89 out of 1261 genes, 7.1% 3 out of 55 genes, 5.5% 0.2076977 CDC48, NTF2, orf19.5281
peroxisome 33 out of 1261 genes, 2.6% 2 out of 55 genes, 3.6% 0.255921 ACT1, APE2
nucleolus 71 out of 1261 genes, 5.6% 2 out of 55 genes, 3.6% 0.2194046 NOC2, orf19.3690.2
hyphal tip 16 out of 1261 genes, 1.3% 2 out of 55 genes, 3.6% 0.1224516 ACT1, TPM2
GO-Slim term: Function Cluster frequency total proteins Cluster frequency Genes annotated to the term
protein binding 178 out of 1261 genes, 14.1% 15 out of 55 genes, 27.3% 0.00413539 CDC12, CDC48, FBA1, GPM1, HSP60, HSP70, HSP90, NTF2, PFY1, SSA2, SSB1, SSC1, TEF1, TIM9, orf19.5281
oxidoreductase activity 166 out of 1261 genes, 13.2% 12 out of 55 genes, 21.8% 0.02619823 AHP1, AHP2, COX5, ERG1, GRP2, LPD1, QCR2, RNR21, TRX1, orf19.2244, orf19.3175, orf19.5517
hydrolase activity 214 out of 1261 genes, 17% 12 out of 55 genes, 21.8% 0.08479468 APE2, ATP5, CDC12, CDC48, HSP60, HSP90, PHR1, RHR2, SSB1, SSC1, TEF1, orf19.4609
lyase activity 38 out of 1261 genes, 3.0% 6 out of 55 genes, 10.9% 0.00398928 ACO1, FBA1, FUM11, FUM12, PDC11, RPS3
structural molecule activity 105 out of 1261 genes, 8.3% 6 out of 55 genes, 10.9% 0.1388934 ACT1, CDC12, RPL17B, RPP2B, RPS3, orf19.3690.2
transferase activity 167 out of 1261 genes, 13.2% 6 out of 55 genes, 10.9% 0.150206 ACT1, MET6, PHR1, TAL1, TKL1, orf19.5517
molecular function unknown 236 out of 1261 genes, 18.7% 5 out of 55 genes, 9.1% 0.02375213 MAM33, NOC2, PIN3, RCT1, TPM2
RNA binding 116 out of 1261 genes, 9.2% 5 out of 55 genes, 9.1% 0.1880254 HCR1, RPS3, TEF1, orf19.3690.2, orf19.5281
isomerase activity 27 out of 1261 genes, 2.1% 4 out of 55 genes, 7.3% 0.02183008 GPM1, PMM1, TPI1, TRX1
transporter activity 79 out of 1261 genes, 6.3% 4 out of 55 genes, 7.3% 0.1984733 ATP5, COX5, QCR2, TIM9
DNA binding 76 out of 1261 genes, 6.0% 3 out of 55 genes, 5.5% 0.2311094 ACO1, HSP60, RIM1
lipid binding 41 out of 1261 genes, 3.3% 2 out of 55 genes, 3.6% 0.2789673 CDC12, PFY1
ligase activity 61 out of 1261 genes, 4.8% 1 out of 55 genes, 1.8% 0.1800337 LSC1
peptidase activity 40 out of 1261 genes, 3.2% 1 out of 55 genes, 1.8% 0.3076956 APE2
phosphatase activity 17 out of 1261 genes, 1.3% 1 out of 55 genes, 1.8% 0.366317 RHR2
enzyme regulator activity 41 out of 1261 genes, 3.3% 1 out of 55 genes, 1.8% 0.3014397 SSC1
can not be mapped to a GO slim term 53 out of 1261 genes, 4.2% 1 out of 55 genes, 1.8% 0.2257677 orf19.5676