Gesto-Borrotoet al. (A · Up PptTt/atf Rp cAMPbp Up Hp Psazu Nr Up Hp Up CpphIIIox cAMPbp Hp Ccox...
Transcript of Gesto-Borrotoet al. (A · Up PptTt/atf Rp cAMPbp Up Hp Psazu Nr Up Hp Up CpphIIIox cAMPbp Hp Ccox...
burphySTM815fhb
cupnecHPC(L)fhb
cupnecJMP134fhb
cupnecN1fhb2
cupnecN1fhb1
Tr Hp
NifA MarRs Rndes Sp Mδi Cd Mcc
Gt Tr Hp
Nat PG PH PI Jtp PK
HpHpCabefhRepNAD(P)H dh
Act PG PH PI PJ PK
NsrRHpCasTrGrkes
HpTr 3Imdh Hp
THp
HpHpHlnsph-ns T
rhilegUPM1137fhb
sinmel1021fhbNosY NosXNosL
NosFNosD
HpPCuep Hp
NosR NosZ
Hp TrcB Sox Tr Aep D2nd Aep
Hmsq Hmrr D2nd Tr
Figure S1
Gesto-Borroto et al.
(A)
Chr
n.i.
Chr
Chr
Pmd
n.i.
Pmd
Perll Hp Hp Pthie Hp T
Perll Hp Pthie T
NAD(P)Hnr
azodoeUFLA1-100sdgb
braelk587sdgb1braelk587sdgb2
braelk587sdgb3
braelkUSDA76sdgb1
braelkUSDA76sdgb2
Up
ABCtntsP3Bs
OxrNADbd/FAD bd Uadh
Pdmt Akr NADadh Gluc Nt
Pmbp
Hp Hp
Thir Hp Puf
tRNA-Thr Hp HpABCtsts
β-lac
Cd ABCtnts
Gluc Aldh
Pdmt
T Hp
braelkUSDA76sdgb3
PCuepUp
Tdsi BNRrld Omrp Puf
ABCtsts
Mtrk
(B)
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
braelkUSDA3254sdgb1
braelkUSDA3254sdgb2
braelkUSDA3254sdgb3
Mtrk
ABCtsts
Puf Omrp BNR/Asp br Tdsi Up Up PCuep
Hp
Hp
ATPase chrp Hp
Hp
T
THp
Hp
Hp
braelkUSDA3254sdgb4ABCtsts
Hp NADadh
Pmbp
Gluc
braelkUSDA94sdgb1
braelkUSDA94sdgb2
braelkUSDA94sdgb3
Pdmt Akr NADadh Gluc
Pmbp
ABCtnts
Hp
Perll Hp Pthie Hp
ABCtsts
Puf Omrp BNR/Asp br Tdsi Up Up PCuep
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
braelkUSDA3259sdgb1
braelkUSDA3259sdgb2
braelkUSDA3259sdgb3
braelkUSDA3259sdgb4
braelkWSM1741sdgb1
ABCtstsNADadh
Pmbp
Gluc Pc1,2dox
HpHp
ATPase chrpHp
HpT
Mtrk
ABCtsts
Puf Omrp BNR/Asp br Tdsi Up Up PCuep
Hp
Hp
THp
ABCtbcaats
Hp
Fthf
UIIIs Asp/Glu at
Up
NAD(P)Hnr
braelkWSM1741sdgb2
braelkWSM2783sdgb1
ABCtsts
Puf Omrp BNR/Asp br Tdsi Up Up
Pcd ABCtnts Uadh Gluc
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
braelkWSM2783sdgb2
braelkWSM2783sdgb3
brajap22sdgb
brajapin8p8sdgb
brajapis5sdgb
Rr
Sox PASf
Tr
Hp
PASd
Up TdsiBNR/Aspbr
Omrp Puf
ABCtsts
Tr
AnrABCtnts Nnt Gluc Akr
Ser/Thr pk FNt
ABCtntsHpAnr
Akr
AnrAkr
FNt Ser/Thr pk
ABCtntsHp
brajapUSDA4sdgb1
brajapUSDA4sdgb2
Akr Gluc UadhABCtnts
NAD(P)Hnr
Nnt
ABCtstsβ-lac
Puf Omrp Hp Up
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
Akr Gluc Nr Nr Nep
Akr Gluc Uadh
brajapUSDA6-7488sdgb1
brajapUSDA6-7488sdgb2
brajapUSDA6-8372sdgb2
brajapUSDA6-8372sdgb1
brajapUSDA38sdgb1
brajapUSDA38sdgb2
ABCtnts
Oxr
ABCtts
Puf Omrp Hp Tdsi
NADPHqr
ABCtsts
Puf Omrp BNR/Asp br Tdsi
ABCtntsNAD(P)H
nrNnt
NAD(P)Hnr
ABCtntsNnt Gluc AkrUadh
NADPHqr
ABCtsts
Puf Omrp BNR/Asp br Tdsi
NAD(P)Hnr
brajapUSDA122sdgb1
ABCtntsNnt Uadh Akr
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
brajapUSDA122sdgb2
brajapUSDA123sdgb1
brajapUSDA123sdgb2
brajapUSDA124sdgb1
brajapUSDA124sdgb2
brajapUSDA135sdgb1
brajapUSDA135sdgb2
NAD(P)Hnr
ABCtntsNnt Uadh Akr
Ump Hp N-terdtmdHp
AnrABCtnts Nnt Gluc
Goxald Ptii L-2at4cah
ABCtnts
Puf Omrp Hp
Akr Gluc UadhABCtnts
NAD(P)Hnr
Nnt
Tdsi BNR/Aspbr
Omrp Puf
ABCtstsUp
Puf Omrp Up Up PCuepPtii Hp
ABCtsts
NAD(P)Hnr
brajapWSM1743sdgb
ABCtntsNnt Uadh Gluc
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
brajapUSDA110sdgb1
brajapUSDA110sdgb2
brajapWSM2793sdgb1
brajapWSM2793sdgb2
ABCtntsNep Pnr NasA Akr
PCuepHp
ABCtnts
Hp
NAD(P)Hnr
ABCtntsNnt Uadh Gluc
ABCtsts
ABCtpts
Hp
Puf Omrp Hp
braelkWSM2783gcs
brajapin8p8gcs
ACoAdh
Dh
Pmp Up
2dhp2r Hp
Hp
tRNA-Arg
Tr
ABCtnts ECoAhyd
StHk Tr Hp
Tr Hp
Adsucl Amh cAMPbp
PASdSb/dgc ACoAs
(C)
n.i.
n.i.
Chr
Chr
n.i.
n.i.
brajapis5gcsrhietl8C3gcs
rhietlCFN42gcs1
rhietlCFN42gcs2
StHk Tr Hp
Tr Hp
Adsucl Amh cAMPbp
PASdSb/dgc ACoAs
Hp Hp
PtsNch
McpX1 HpRbsk
Def1 StdB Fmt TruA
DapE2 DadDHp
SecD1 Hp PKes
Hp
Pgt
Hp
McpE
CheA
CheW1
CheRch1
CheBch1
CheY2
CheD Hp FliF
rhietlCIAT652gcs1
Pmcp PDNArpRbsk
Def1 StdB Fmt TruA
DapE2 DadDHp
Ppsp
rhietlCIAT652gcs2
rhietlCIAT894gcs
SecD1 Hp PKes
Hp
Hp
Hp
McpE
CheACheW1
CheR1
CheB1
CheY2
CheD Hp FliFHp
Hp Hp Pgt
n.i.
n.i.
Chr
Chr
Chr
Chr
n.i.
rhietlCNPAF512gcs
rhietlGR56512gcs
rhileg128C53gcs1
rhileg128C53gcs2
PDNArp
Pdf PpspMet-
tRNAftPsp tRNApsI
Hp Sdapdsp
PDNArpSdapdsp Hp
PsI Met-tRNAft
Pnabp
Hp Pdf
Up McpSk
KeftKtsHp
Hp
Aaσrf
CheACheW1
CheR1
CheB1
CheY2
CheD
HpFliF
4a 4doxL-Arat
Ptr
Hp Pemp
rhileg248gcs1Pdmt Rsip NrpPtsN
Sk Up
Pnabp
HpMet-
tRNAft PsI
Hp Sdapdsp Nstp
rhileg248gcs2
rhileg3841gcs1
Pemp Hp KeftKts
Ptr
4a4doxL-Arat
AaσrfMcp
CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
Pmcp Rbsk PDNArp
PpdfPpsp
Fmt TruA
Ptmp DapE DapD
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
Chr
CheDrhileg3841gcs2
rhilegGB30gcs1
rhilegGB30gcs2
Ptep Ptmp Ptiesp Ptmp
HpCheX
CheY CheA CheWCheR CheBCheY Hp
FliF
Mcp Sk Up
PtmpHp
Met-tRNAft PsI
Hp Sdapdsp
KeftKtsHp
Rr
Aaσrf
CpHkCstpMcpCrrCheY
CpHpFliF
4a 4doxL-Arat
Ptr
Hp Pemp
rhilegPs8gcs1
rhilegPs8gcs2
Mcp Sk Up
Pdf Hp
Met-tRNAft PsI
Pnabp
T
Pemp Hp KeftKts 4a4doxL-Arat
RrMcp
CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
Ptr
rhilegTOMgcs1
rhilegTOMgcs2
Mcp Sk Up
Pdf Hp
Met-tRNAft PsI
Pnabp
Hp Sdapdsp Nstp
Pemp Hp KeftKts
Ptr
4a4doxL-Arat
Aaσrf
Rr CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
Chr
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
rhilegUPM1131gcs
rhilegUPM1137gcs1
Pemp Hp KeftKts
Ptr
4a4doxL-Arat
Aaσrf
Rr CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
rhilegUPM1137gcs2
SkUp
Pnabp
HpMet-tRNAft
PsI
HpSdapdspNstp Mcp
PempHpKeftKts
Ptr
4a4doxL-Arat
Aaσrf
RrCpHkCstp
Mmcp
CrrRrCpHpFliF
Hp
rhilegVc2gcs1
rhilegVc2gcs2
Mcp Sk Up
Hp
Met-tRNAft PsI
Pnabp
Hp Sdapdsp Nstp
Pemp Hp KeftKts
Ptr
4a4doxL-Arat
Aaσrf
Rr CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
rhilegVF39gcs1
rhilegVF39gcs2
SkUp
Pnabp
HpMet-tRNAft
PsI
HpSdapdspNstp Mcp
KeftKtsHp
Rr
Aaσrf
CpHkCstpMcpCrrCheY
CpHpFliF
4a 4doxL-Arat
Ptr
Hp Pemp
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
rhilegVh3gcs1
rhilegVh3gcs2
rhilegWSM1455gcs1
SkUp
PdfHpMet-tRNAft
PsI
HpSdapdspNstp Mcp
Pnabp
Pemp Hp KeftKts
Ptr
4a4doxL-Arat
Aaσrf
Rr CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
DMT Rsip NrpPtsn
Sk Hp
Hp
Met-tRNAft PsI
Pnabp
Hp Sdapdsp Nstp
rhilegWSM1455gcs2
rhilegWSM1481gcs1
Pemp Hp KeftKts
Ptr
4a4doxL-Arat
Aaσrf
Rr CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
DMT RsipNrpPtsn
Sk Up
HpMet-
tRNAft PsI
Pnabp
Hp Sdapdsp Nstp
rhilegWSM1481gcs2
sinfreGR64gcs
Pemp Hp KeftKts
Ptr
4a4doxL-Arat
Aaσrf
Rr CpHk Cstp
Mmcp
Crr Rr Cp Hp FliF
Hp
Rr
Aaσrf
CpHkCstp
Mmcp
CrrRrCpHpFliFABCtsts
SkHp Lr1e
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
sinfreHH103gcs
sinfreUSDA257gcs
sinmel1021gcs
Aaσrf
Rr CpHk Cstp
Mmcp
Crr Rr Cp Hp FliFABCtsts
Up Sk
ABCtstsLrm Pck Pup Prr CheA
CheW
CheR Crr
CheY
CheD Pup FliF
ABCtpts HpMcpE
Hp CheA
CheW1
CheR
CheY2
CheD
CheB Hp FliF
azodoeUFLA1-100thb1
azodoeUFLA1-100thb2
braelkWSM2783thb
braelkUSDA3259thb
DNA lig ABCtCots Up
RecR
CBSdcmp
DNAbp Hp DNApol III BsrpRNA
Dadtphh NTP-pphh
Pmscbe Dlh Hp
Act Tr Am PcthdHp
Fsnr
Hp
Gr Hp
Oxr NADbd/FADbd
Hp Pcbs
NIPSNAP
Pdthdsi
Ptr
Hp
Hp
Rrf2fp Hp
PcSETd
Hp
Hp Up
Lig α-β-diox
Hp
NIPSNAP
Pdthdsi
Ptr
Hp Rrf2fp Hp
PcSETd Up
Lig α-β-diox Hp IseppA
(D)
n.i.
n.i.
Chr
n.i.
n.i.
n.i.
n.i.
Hp
braelkWSM1741thb1
braelkWSM1741thb2
braelkUSDA94thb1
Hp
Hp StHk Rr Hp
Hp Ptr Hp
Amap Pmskp
Hp
GuaK
Up
Lig α-β-dioxHp
PcSETd
Mtd Hp Rrf2fpHp
Int
Hp
Hp
ABCtaats UpHp
Poxr
Hp Ptr
Pimp
Phyd LglUp
braelkUSDA94thb2
braelkUSDA3254thb
braelkUSDA76thb1
braelkUSDA76thb2
HpPcbs
NIPSNAP
Pdthdsi
Ptr
HpHp Rrf2fp
HpPcSETd
Hp Hp
Up
Lig α-β-diox
Hp Pcbs
NIPSNAP
Pdthdsi
Ptr
Hp
Hp
Rrf2fp Hp
PcSETd
Hp
Hp Up
Lig α-β-diox
ABCtaats HpUp Hp
Poxr
Hp Tr
Ptii
P3hyalks Phediox
TrRNApolσf
Pomp
Hp PcbsHp
Rrf2fp Hp Hp Lig α-β-diox
NIPSNAP
Pdthdsi
Ptr Hp PcSETd Tr
Hp
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
braelk587thb1
Ptr PdthdsiHp
TrHp Hp
HpPcSETd
Hp Hp
Tr
Lig α-β-dioxHp
braelk587thb2
brajap22thb1
Ptii
P3hyalks Phediox
Tr RNApolσf Pomp
AtCOdh Hp
PQQddh
RieskeFe-S p
3haCoAdh
Arr ABCttts
ABCttts
Hp
brajapUSDA122thb2AraCtDNAbd
brajap22thb2
brajap22thb3
brajapUSDA122thb1
Rr
Fer
Mglr
Tr
Hp
Pmscbe
Hp
Hp
Hp
Fsnr
Hp Fer
Ppphde
HpPuf NifZ
LRVp Fe-Scp
Ipfor NifBNifQ NifHFe/Znurp
L-Glns RieskeFe-S p
Tr
TrUp Tgle Shk
BCoAl Duf
Pmp Up
AtCOdh
PQQddh
RieskeFe-S p
3haCoAdhABCttts
ABCttts Hphat
FAD/FMNcdh
GlnS RieskeFe-S p
Tr PRCbd
Up Shk
BCoAl Phyd Duf BCoAdl
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
brajapUSDA123thb1
Tr
AtCOdh
PQQddhRieskeFe-S p
HpbrajapUSDA123thb2
brajapUSDA124thb1
2,3dhy2,3dhybCoArce
Up Phyd BCoAl Hb
Shk
Pcbp
Tgle
KeftKtPcbp
Tr
AtCOdh
PQQddh
RieskeFe-S p
3haCoAdhABCttts
ABCttts Hphat
FAD/FMNcdh
Hp
brajapUSDA124thb2
brajapUSDA135thb1
brajapUSDA135thb2
brajapUSDA38thb1
Lip
Glns Glns
Tr
RieskeFe-S p
PRCbd
Shk
PhydBCoAl Duf BCoAdl
AtCOdh
PQQddh
RieskeFe-S p
3haCoAdh
ABCttts
ABCttts
HpHp
BCoAox BCoAdl Phyd BCoAl
ShK
Hp
AtCOdhHp
PQQddh
RieskeFe-S p
3haCoAdh
3haCoAdh Ptr Hp
Arr
Guf ABCttts
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
brajapUSDA38thb2
BCoAdl Duf Phyd BCoAl
ShK
Hp
Tgle
KeftKtHp
PRCbd
Hp
brajapUSDA4thb2
brajapUSDA4thb1
AtCOdh
PQQddh
RieskeFe-S p
3haCoAdh
PhABCt
ABCttts
Hp Arr ABCttts Hp
PdmtHp Hp
UrSAMp
Abbmoxi
Ptr Metl
ABCtuts Adguac
brajapUSDA4thb3
brajapUSDA6-8372thb1
brajapUSDA6-7488thb1
brajapUSDA6-7488thb2
RieskeFe-S p Hp
BCoAl BCoAdlDufPhyd
ShKGlns
β kadptr PRCbd
3haCoAdh
RieskeFe-S p
Arr
GufABCttts
Goxald
Ptr PhABCt
Adh
AldhHp
Tr
PRCbd
KeftKt Hp
Tgle Hp ShK
ACoAs Hyd Duf BCoAdl
3haCoAdh
RieskeFe-S p
Arr
GufABCttts Ptr PhABCt HpHp
PQQddh Hp
AtCOdh
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
brajapUSDA6-8372thb2
β kadptr
PRCbd
KeftKts Hp
Tgle Hp ShK
BCoAl Phyd Duf BCoAdl
brajapWSM1743thb2
brajapWSM1743thb1
3haCoAdh
RieskeFe-S p
ABCttts Hp
PQQddh
AtCOdh Hp
ABCttts
Omrp
Hp
RieskeFe-S p GlnsHp
β kadptr PRCbd
Shk
BCoAl BCoAlPhyd
3haCoAdh
brajapWSM2793thb1
brajapWSM2793thb2
brajapWSM2793thb3
brajapin8p8thb1
RieskeFe-S p
Guf ABCtttsAtCOdh Hp PhABC t
Arr
PtrHp
RieskeFe-S p
Tr PRCbd
Up
AraCDNAbp
Tgle Shk
BCoAl BCoAdlDufPhyd
Lgl
Hp
CoenzF420 Hp Hp PtrMetl
Ptr AraCDNAbp
UrSAMp
3haCoAdh
RieskeFe-S p
ABCttts
AtCOdhHpHp ABCttts Hp
PQQddh
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
brajapin8p8thb2
2,3dhy2,3dhybCoArce
Phyd BCoAl
Shk Tgle RieskeFe-S p UpTr
Tr
L-Glns
brajapis5thb1
brajapis5thb2
3haCoAdh
RieskeFe-S p
ABCtttsAtCOdh HpHp
ABCttts
Hp
PQQddh
2,3dhy2,3dhybCoArcePhydBCoAl
ShkTgleRieskeFe-S p Up Tr
Tr
L-Glns
brajapUSDA110thb
mescicWSM1271thb
mescicWSM4083thb
PGlns Pdiox
Tr Hp
PGloxa Ptr Racbe
ACoAs Phyd Hp ECoAhyd
Puf
Tgap
Puf
Tef Hp Puf
tRNA-Trp
PptTt/atf Rp
GTPase tef Ppep tRNA-Trp
Tr
ABCtaatsGly/Daaox
mescicCMG6thb
PptRp
GTPase tef Ppep
tRNA-Trp
Up Tt
n.i.
n.i.
n.i.
Chr
Chr
n.i.
n.i.
meslotR7Athb
meslotR88bthb
meslotUSDA3471thb1
EamAltfUp
Pmp Tef Ppep
Hp
tRNA-Trp
Up Ppt Tt/atfRp
EamAltfUp
Pmp Tef Ppep
tRNA-Trp
Up PptTt/atfRp
cAMPbp
Up Hp
Psazu
UpNr
UpHp CpphIIIox
cAMPbp
Hp
Ccox
meslotUSDA3471thb2
meslotCJ3symthb
RpTt/atf
tRNA-Trp
Ppt PpepTef
RpTt/atf
tRNA-Trp
Ppt Up GTPase tefPpep
meslotNZP2037thb1
meslotNZP2037thb2Pmp PsazuHcp
Tr
Dnr Up
EamAltfUp
Pmp Tef Ppep
Hp
tRNA-Trp
Up PptTt/atfRp
GAFdcp Up HpHp
Hp Up
ChapGrol
CochapGroES
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
meslotMAFF303099thb
rhietlCFN42thb1
Tgap
Hp
Tuf Hp Hp
tRNA-Trp
Tl TatpRp
PABCtHp
Mi2dh Tmup
Pmv/ertmp
Ptr
Hp
PblrpHp
Hts
Pmp Hp
rhietlCFN42thb2
rhietlCIAT652thb1
rhietlCIAT652thb2
rhietlKim5thb
Pta
Ptr Pact
Phyd
Acamhy
DNArrp
Ppep Hp
Hp Phyd
RpTif
PABCt Hp
Hcmp ThuBch
Pmv/e rp
Ptr
AbbmoxiHp
Pmp Hp
Hts
Ptr
Pta
Pact
Phacdhhyd
AphA RecX Ppep Hp
Ptglcp Phyd
TifRp
Hp
Ptefp Tr
Ptmp
rhietl8C3thb Hp
n.i.
Chr
Chr
Chr
Chr
n.i.
n.i.
Hp
rhietlIE4771thb
rhietlCIAT894thb
Tr
Tr
rhietlBrasil5thb
rhietlCNPAF512thb
rhileg3841thb1
rhileg3841thb2
rhilegWSM1455thb1
Hp Ppep
Up Ppep DNArtr Acpaahyd
Phacdhhyd
Pact Ptr
Pta
PtmcABCtPtmp
PGFO/IDH/MocAfox Ptcp
Ptefp
Ptr
Ptmp
HpHp
Htp
Ptr
Ptr Pact
Phacdhhyd
Pacpaahyd
Ptr Ptmp Ptmp
Hp
TifRp
PheS
ABCtmdtsHp
Pdh Tup Ccdt Tr
Usmp
UebexpsHp TonBfp Hp
Htp
rhilegWSM1455thb2Pta
Ptr Pact
Hacdhhyd
Hdac Hp Ppep Hp
Ppp Phyd
TifRp
PheS
n.i.
n.i.
n.i.
n.i.
Chr
Chr
n.i.
n.i.
rhilegUPM1131thb1Phts
HpUpHp
Uebexps
Usmp
Tr
Mtccd
Tup Pdh
PufABCtmdts
rhilegUPM1131thb2
rhilegUPM1137thb1
rhilegUPM1137thb2
rhilegVF39thb1
Pta
Ptr Act
Hacdhhyd
Dac Up Ppep Up
Ppp Phyd
TifRp
PheS
Phts
HpUp
Uebexps
Usmp
Tr
Mtccd
Tup Pdh
PufABCtmdts
TonBfp Hp
PheS TifRp
Phyd Ppep
Up Ppdmt
Hacdhhyd
DacUp
Pta
PtrAct
Phyd Ppp Hacdhhyd Pta
PheS TifRp
Up Ppdmt DacUp PtrAct
rhilegVF39thb2
HpUpHp
Uebexps
Tr
Mtccd
Tup Pdh
PhtsUsmp
rhilegGB30thb1Phts
HpUp
Uebexps
Usmp
TrMtccd
Tup Pdh
PufABCtmdts
Hp
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
rhilegGB30thb2Phyd Ppp
TifRp
Up Ppdmt
rhileg248thb1
rhileg248thb2
rhilegVc2thb1
Hts
Hp
Uebexps
Usmp
Tr
Mtccd
TupPdh
PufABCtmdts
TonBfpHpT Up
Pta
Ptr Act
Hacdhhyd
Dac Up Ppdmt Up
Ppp Phyd
TifRp
PheS
GIIci
Hts
HpUebexps
Usmp
TrMtccdTupPdh TonBfpHp Up
rhilegVc2thb2
rhilegVh3thb1
rhilegVh3thb2
GIIci
Hp Up Ppdmt Up Dac
Hacdhhyd
Act Up Ptr
Pta
RpLrp Tif
Phyd Ppp
Up Ppdmt
Hacdhhyd
DacUp
Pta
PtrAct
Hp Up
Uebexps
Usmp
Tr
Mtccd
Tup Pdh
PufABCtmdts
TonBfp Hp
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
Phts
rhileg128C53thb1
RpLrp Tif Up Ppdmt DacUp PtrAct
Phyd Ppp Hacdhhyd Pta
rhileg128c53thb2 Hts
Hp
Uebexps
Usmp
Tr
Mtccd
TupPdh
Puf
TonBfpHp UpHp Pimp
rhilegPs8thb2
rhilegTOMthb1
rhilegTOMthb2rhilegWSM1481thb1
rhilegPs8thb1Phts
Hp Up
Uebexps
Usmp
Tr
Mtccd
Tup Pdh
PufABCtmdts
TonBfp Hp Pimp
Hp
Hp Ppdmt
Hts
HpUebexps
Usmp
Tr
Mtccd
TupPdh
PufABCtmdts
HpUp
Pta
Ptr Act
Hacdhhyd
Dac Up Ppdmt Up
Ppp Phyd
TifRp
PheSLrp
Hts
HpUebexps
Usmp
Tr
Mtccd
TupPdh
PufABCtmdts
Up
rhilegWSM1481thb2
Ptr Act Dac Up Ppdmt Up TifRp
PheSLrp
Pta Hacdhhyd Ppp Phyd
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
n.i.
rhilupHPC(L)thb1
rhilupHPC(L)thb2
sinfreHH103thb
Ser/Thrpk
Ppep
TifRp
Up
Est ABCtsts
Tr
Pdlh
Act Hp
NTPpph Pheh Allam
Tr Up Hp
Usmp Hp Nuct Phmm
Sucgbtp
Hp
UDPhxt
ABCtpts Zn-ddp
Up
Mtccd Tr
Usmp
Uebexps
HpUp
TonBfp
Hp
Hts ABCthts
sinfreGR64thb
sinfreUSDA257thb
sinmel1021thb1
ABCtpts Zn-ddp
Up
Mtccd Tr
Usmp
Uebexps TonBfp
Hts ABCthts
HpUp Hp
Dpbpp Up
Hp Plipp
Qacrp Ptr
Pup
Pup
Htp Hbpp
DppB2 DppA2 Pdpp
EmrE
Hp
NtrPNtrR1
Hp
Hp
Hp Phts
n.i.
n.i.
n.i.
n.i.
n.i.
Chr
sinmel1021thb2
PpbpPABCtp
AsfB
Por Hp PGlns Hp
HpPABCtbcaats
burphySTM815thb1
burphySTM815thb2
HSerdh Thrs Mocsdp
Moptcf
MoaE Tr ClpB
Hp PDNAup
P Hp
LemAfpHp
Hp Ptmp
Smdrp
Tr
cupnecJMP134thb
cupnecHPC(L)thb
LysRc Ptmp Puf
Pspp
Puf
Hp TetR
Dacgk
Gt Mphest
DacgkGtMphest Tr Hp
HpHp
cupnecN1thb1cupnecN1thb2
CitA PM38 Tr
Excsr Hp SDR
SufA SufB SufC SufD
SulTfABCt
Pmobp Hp LolE Hp
LOGfp TrDacgk
MgtA Hp Act
Chr
Chr
Chr
Chr
n.i.
Chr
Chr
Abbreviations for predicted polypeptides:
2,3dhy2,3dhybeCoArce, 2,3 dihydro 2,3 dihydrobenzoyl CoA ring cleavage enzyme;
2dhp2r, 2 dehydropantoate 2 reductase; 3haCoAdh, 3 hydroxyacyl CoA dehydrogenase;
3imdh, 3-isopropylmalate dehydrogenase; 4-a4-dox-L-arat, 4-amino 4-deoxy-L-arabinose
transferase; Aaσrf, Anti anti σ regulatory factor; Abbmoxi, Antibiotic biosynthesis
monooxygenase; ABCtaats, ABC type amino acid transport system; ABCtbcaats, ABC
type branch chain amino acid transport system; ABCtCots, ABC type Co transport system;
ABCthts, ABC type hemin transport system; ABCtmdts, ABC type multidrug transport
system; ABCtnts, ABC type nitrate transport system; ABCtpts, ABC type peptide
transport system; ABCtsts, ABC, type sugar transport system; ABCtts, ABC type
transport system; ABCttts, ABC type tungstate transport system; ABCtuts, ABC type
uncharacterized transport system; Acamhyd, acetyl aminohydrolase; ACoAdh, acylCoA
dehydrogenase; ACoAs, AcetylCoA synthetase; Acpaahyd, acetylpolyamine
aminohydrolase; Act, acetyl transferase; Adguac, adenylate and guanylate cyclase; Adh,
alcohol dehydrogenase; Adsucl, adenylosuccinate lyase; Aep, arabinose efflux permease;
Akr, aldo/keto reductase; Aldh, aldehyde dehydrogenase; Allam, allantoate
amidohydrolase; Am, amidase; Amap, Addition module antidote protein; Amh,
amidohydrolase; Anr, Assimilatory nitrate reductase; AphA, acetylpolyamine
aminohydrolase protein; AraCtDNAbp, AraC type DNA binding protein; Arr, Arsenate
reductase; AsfB, putative ferredoxin protein; Asp/Gluat, Asp/Glu amidotransferase;
AtCOdh, aerobic type carbon monoxide dehydrogenase; ATPase chrp, ATPases involved
in chromosome partitioning; BCoAdl, benzoyl CoA dihydrodiol lyase ; BCoAl, benzoate
CoA ligase; BCoAox, benzoyl CoA oxygenase, βkadptr, β ketoadipate pathway
transcriptional regulator; βlac, β lactamase; BNR/Aspbr, BNR Asp box repeat; BNRrld,
BNR repeat like domain; BsrpRNA, bacterial signal recognition particle RNA; Cabefh, Ca
binding ef-hand; cAMPbp, cAmp-binding protein; Cas, Ca sensor; CBS-dcmp, CBS-
domain containing membrane protein; Ccdt, cation/cationic drug transporter; Ccox,
cytochrome oxidase; Cd, catechol 1,2-dioxygenase; ChapGrol, chaperonin Grol; CheA,
chemotaxis two component sensor histidine kinase protein; CheBch1, protein glutamate
methyltransferase; CheD, chemotaxis protein; CheRch1, chemotaxis methyltransferase
protein; CheW1, chemotaxis signal transduction protein; CheY2, chemotaxis two
component response regulator protein; CitA, citrate proton symporter; ClpB, ATP
dependent chaperone; CochapGroES, co-chaperonin GroEs; CoenzF420, coenzyme
F420; Cp, chemotaxis protein; CpHk, chemotaxis protein histidine kinase; CpphIIIox,
coproporphyrinogen III oxidase; Crr, Chemotaxis response regulator; Cstp, chemotaxis
signal transduction protein; D2nd, dioxygenase related to 2-nitropropane dioxygenase;
Dac, deacetylase; Dacgk, diacylglycerol kinase; Dadtphh, diadenosine tetraphosphate
hydrolase; DapD, N-succinyltransferase protein; DapE, putative succinyl diaminopimelate
desuccinylase protein; DapE2, succinyl diaminopimelate desuccinylase protein; Def1,
Peptide deformylase protein; Dh, dehydrogenase; Dlh, dienelactone hydrolase; DMT, DMT
(drug/metabolite transporter) superfamily permease; DNAbp, DNA binding protein,
DNAlig, DNA ligase; DNApolIII, DNA polymerase III; DNArrp, DNA repair regulator
protein; DNArtr, DNA repair transcriptional regulator; Dnr, dissimilatory nitrite reductase;
Dpbpp, dipeptide binding periplasmic protein; DppA2, putative dipeptide binding
periplasmic protein; DppbB2, putative dipeptide transport system; Duf, domain of
unknown function; EamAltf, EamA like transporter family; ECoAhyd, enoyl CoA hydratase;EmrE,
transmembrane protein; Est, esterase; Excsr, extracytoplasmic solute receptor;
FAD/FMNcdh, FAD/FMN containing dehydrogenase; Fe/Zn urp, Fe/Zn uptake regulation
protein; Fer, ferredoxin; Fe-Scp, Fe-S cluster protein; Flif, flagellar M-ring protein; Fmt,
formyltransferase protein; FNt, formate/nitrite transporter; Fsnr, ferredoxin subunit of
nitrite reductase; Fthf, formyltetrahydrofolate; GAFdcp, GAF domain containing protein;
GIIci, group II catalytic intron; Glns, Gln synthetase; Gluc, gluconolactonase;
Gly/Daaox, Gly/D amino acid oxidase; Goxald, glyoxalase like domain; Gr, glutathione
reductase; Grkes, glutathione-regulated K-efflux system; Gt, glycosyl transferase;
GTPase tef, GTPase translation elongation factor; Guak, guanylate kinase; Guf, glycerol
uptake facilitator; Hacdhhyd, haloacid dehydrogenase hydrolase; Hbpp, hemin binding
periplasmic protein; Hcmp, hypothetical conserved membrane protein; Hcp, hybrid
cluster protein; Hdac, histone deacetylase; Hlnsph-ns, histone like nucleoid-structuring
protein H-NS; Hmrr, heavy metal response regulator; Hmsq, heavy metal sensor
quinase; Hp, hypothetical protein; Hphat, histidinol phosphate aminotransferase;
HSerdh, homoserine dehydrogenase; Htp, hemin transport protein; Hts, Hemin transport
system; Hyd, hydrolase, Int, integrase; Ipfor, indol pyruvate ferredoxin oxidoreductase;
IseppA, intracellular septation protein A; Jtp, J transmembrane protein, KeftKts, kef type
K transport system; L-2at4cah, L-2-amino-thiazoline-4-carboxylic acid hydrolase;
LemAfp, LemA family protein; Lgl, lactoylgluthathione lyase; L-Glns, L-Gln synthetase;
Ligα-β-diox, lignostilbene α-β-dioxygenase; Lip, lipase; LoGfp, LoG family protein;
LolE, ABC transporter; Lr1e, L-rhamnose 1-epimerase; Lrp, long range pseudoknot;
LRVp, LRV protein; LysR, regulatory protein; MarRs, transcriptional regulator; Mcc,
muconate and chloromucanate cycloisomerase; Mcp, methyl accepting chemotaxis
protein; McpE, methyl accepting chemotaxis protein; McpX1, methyl accepting
chemotaxis protein; Metl, methylase; Met-tRNAft, Methionyl tRNA formyltransferase;
Mglr, monothiol glutaredoxin; MgtA, mannosyltransferase; Mi2dh, myoinositol 2-
dehydrogenase; Mmcp, methylase of methyl accepting chemotaxis protein; MoaE,
molybdopterin biosynthesis protein; Mocsdp, Mo cofactor synthesis domain containing
protein; Moptcf, molybdopterin converting factor; Mphest, metallophosphoesterase;
Mtccd, membrane transporter of cation and cationic drugs; Mtd, methyltransferase
domain; MtrK, methylthioribose kinase; Mδi, muconolactone δ-isomerase; NADadh,
NAD dependent aldehyde dehydrogenases; NAD(P)Hnr, NAD(P)H nitrite
reductase; NAD(P)Hdh, NAD(P)H dehydrogenase; NADPHqr, NADPH quinone
reductase; NasA, nitrate reductase; Nat, N-acetyltransferase; Nep, nitrite extrusion
protein; NifA, transcriptional regulator; NifB, responsible for formation of a functional Mo-
Fe nitrogenase; NifH, Mo nitrogenase iron protein subunit; NifQ, responsible for
formation of a functional Mo-Fe nitrogenase; NifZ, nitrogenase Mo-Fe maturation protein;
NIPSNAP; Nnt, nitrate/nitrite transporter; NosD, periplasmic Cu-binding precursor;
NosF, Cu-ABC transporter; NosL, N2O reduction; NosR, regulatory protein for N2O
reductase; NosX, N2O reduction; NosY, N2O metabolic protein; NosZ, nitrous oxide
reductase precursor; Nr, nitrite reductase; NrpPtsN, nitrogene regulatory protein PtsN;
NsrR, transcriptional regulator; Nstp, N-succinyltransferase protein; Nt, nitrate transport;
Nterdtmd, N-terminal double transmembrane domain; NTPpph, NTP
pyrophosphatase; NTP-pphh, NTP pyrophosphohydrolases; NtrP, nitrogen regulatory
protein; NtrR1, nitrogen regulatory protein; Nuct, nucleotidyltransferase; Omrp, outer
membrane receptor protein; Oxr, oxidoreductase; OxrNADbd/FADbd, oxidoreductase
NAD binding domain/FAD binding domain; P3Bs, precorrin 3B synthase; P3hyalks, Poly
(3-hydroxyalkanoate) synthetase; PABCt, probable ABC transporter; PABCtbcaats,
Putative ABC type branch chain amino acid transport system; PABCtp, putative ABC
transport protein; Pacpaahyd, Putative acetylpolyamine aminohydrolase; Pact, probable
acetyltransferase; PASd, PAS domain; PASdsb/dgc, PAS domain S-box/diguanylate
cyclase; PASf, PAS fold; Pblrp, putative bleomycin resistance protein; Pc1,2dox,
protocatequate 1,2 dioxygenase; Pcbp, predicted cobalamin binding protein; Pcbs,
protein involved in cellulose biosynthesis; Pcd, protocatechuate 3,4 dioxygenase; PcK,
putative carbohydrate kinase; PcSETd, protein containing SET domain; Pcthd, protein
containing a thioredoxin domain; PCuep, putative copper export protein; Pdf, peptide
deformylase; Pdh, putative dehydrogenase; Pdiox, probable dioxygenase; Pdlh,
predicted dienelactone hydrolase; Pdmt, permease of the drug/metabolite transporter;
PDNArp, putative DNA recombination protein; PDNAup, putative DNA uptake protein;
Pdpp, putative dipeptidase protein; Pdthdsi, predicted dithiol-disulfide isomerase;
Pemp, protein export membrane protein; Perll, predicted enzyme related to
lactoylglutatione lyase; PG, general secretion pathway proteins; PGFO/IDH/MocAfox,
PGFO/IDH/MocA family oxidoreductase; PGloxa, probable glyoxalase; PGlns, probable
Gln synthetase; Pgt, putative glycosyltransferase protein; PH, general secretion
pathway proteins; PhABCt, phosphate ABC transporter; Phacdhhyd, putative haloacid
dehydrogenase hydrolase; Phediox, phenylpropionate dioxygenase; Pheh,
phenylhydantoinase; PheS, phenylalanyl-tRNA synthetase; Phmm,
Phosphomannomutase; Phts, putative hemin transport system; Phyd, predicted
hydrolase; PI, general secretion pathway proteins; Pimp, predicted integral membrane
protein; PJ, general secretion pathway proteins; PK, general secretion pathway proteins;
PKes, putative K efflux system; Plipp, putative lipoprotein; PM38, peptidase M38;
Pmbp, periplasmic molybdate-binding protein; Pmcp, probable methyl accepting
chemotaxis protein; Pmobp, periplasmic molybdate binding protein; Pmp, predicted
membrane protein; Pmscbe, predicted metal sulfur cluster biosynthetic enzyme; Pmskp,
plasmid maintenance system killer protein; Pmv/erp, probable methyl viologen/ethidium
resistance protein; Pmv/ertmp, probable methyl viologen/ethidium resistance
transmembrane protein; Pnabp, predicted nucleic acid binding protein; Pnr, putative
nitrite reductase; Pomp, predicted outer membrane protein; Por, putative
oxidoreductase; Poxr, predicted oxydereductase; Ppbp, putative periplasmic binding
protein; Ppdf, putative peptide deformylase; Ppdmt, predicted permease of the
drug/metabolite transporter; Ppep, putative permease protein; Ppp, predicted
periplasmic protein; Ppphde, predicted pyridoxal phosphate dependent enzyme; Ppsp,
probable plasmid stabilization protein; Ppt, preprotein translocase; PQQddh, PQQdependent dehydrogenase; PRCbd, PRC barrel domain; Psazu, Pseudoazurin; PsI,
Pseudouridylate synthase I; Psp, plasmid stability protein; Pspp, probable signal
peptide protein; Pta, probable transcriptional activator; Ptcp, putative transporter
component protein; Ptefp, putative transmembrane efflux protein; Ptep, putative
transmembrane exporting protein ; Ptglcp, putative transglutaminase-like cysteine
peptidase; Pthie, predicted thioesterase; Ptiesp, putative transmembrane ion efflux
system protein; Ptif, putative transcriptional initiation factor; Ptii, putative translation
initiation inhibitor; PtmcABCt, putative transmembrane component ABC transporter;
Ptmp, putative transmembrane protein; Ptr, probable transcriptional regulator; PtsNch,
protein N(pi)-phosphohistidine-sugar phosphotransferase; Puf, protein of unknown
function; Pup, putative uncharacterized protein; Qacrp, quaternary ammonium
compound resistance protein; Racbe, regulator of the catabolism of benzoate; RbsK,
ribose kinase protein; RecR, recombination protein; RecX, DNA repair transcriptional
regulator; Rieske FE-Sp, Rieske Fe-S protein; RNApolσf, RNA polymerase σ factor;
RNDes, RND efflux system outer membrane lipoprotein; Rep, regulatory protein; Rp,
ribosomal protein; Rr, response regulator; Rrf2fp, Rrf2 family protein; Rsip, ribosomal
subunit interfase protein; Sdapdsp, succinyl diaminopimelate desuccinylase protein;
SDR, short chain dehydrogenase; SecD1, translocase; Ser/Thrpk, ser/thr protein
kinase; Shk, shikimate kinase; Sk, sugar kinase; Smdrp, small multidrug resistance
protein; Sox, Sulfite oxidase; Sp, secretion protein; StdB, plasmid stability protein;
StHk, signal transduction histidine kinase; Sucgbtp, succinoglycan biosynthesis
transport protein; SufA, iron sulfur cluster assembly transcriptional regulator; SufB,
iron sulfur cluster assembly protein; SufC, iron sulfur cluster assembly protein; SufD,
iron sulfur cluster assembly protein; SulTfABCt, SulT family ABC transporter; T,
transposase; Tatp, transcription antitermination protein; Tdsi, thiol-disulfide isomerase;
Tef, translation elongation factor; TetR, regulatory protein; Tgap, Transglycosylase
associated protein; Tgle, Transglutaminase like enzyme; Thir, thioredoxin reductase;
Thrs, threonine synthase; ThuBch, myoinositol dehydrogenase; Tif, translation
initiation factor; Tl, translocase; Tmup, trehalose maltose utilization protein; TonBfp,
TonB family protein; Tr, transcriptional regulator; TrcB, thiosulfate reductase
cytochrome B; tRNA-Arg; tRNApsI, RNAt pseudouridine synthase I; tRNA-Thr; tRNA-
Trp; TruA, tRNA pseudouridine synthase; Tt, transcriptional termination; Tt/atf,
transcriptional termination/antitermination factor; Tuf, elongation factor, Tup, trehalose
utilization protein; Uadh, Uncharacterized anaerobic dehydrogenase; UDPhxt, UDP
hexose transferase; Uebexps, uncharacterized enzyme involved in biosynthesis of
extracellular polysaccharides; Ullls, uroporphyrinogen lll synthase; Ump,
uncharacterized membrane protein; Up, uncharacterized protein; UrSAMp,
uncharacterized radical SAM protein; Usmp, uncharacterized small membrane protein;
Zn-ddp, Zn-dependent dipeptidase.