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![Page 1: Functional brain Imaging : from measurement to cognition Line Garnero Laboratoire de Neurosciences Cognitives & Imagerie Cérébrale CNRS UPR640 Centre de.](https://reader036.fdocuments.in/reader036/viewer/2022062619/5516264b55034694308b5bda/html5/thumbnails/1.jpg)
Functional brain Imaging :from measurement to cognition
Line GarneroLaboratoire de Neurosciences Cognitives & Imagerie Cérébrale
CNRS UPR640
Centre de Magnétoencéphalographie
Hôpital La Salpêtrière
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Brain Imaging
Principle
• Brain in action
•Rely « brain state « with a behaviour (motor, cognitive on normal and pathological subjects)
• Non invasive : available to human brain
• Large scale observation (106 neurones)
Properties
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Required Models
- Observable quantities for activation : neurobiological and hemodynamical model
-Recording devices : Physical model : from biology to physics
-Experimental protocols :Psychological / cognitive models of processing
- Data AnalysisBrain processing model
-Interpretation :Based on both models
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SUMMARY
-Neurophysiological bases
-Recording devices and physical models
-Exprimental protocols
-Data analysis : segregation or integration
-«Brain Reading » and Brain Computer Interface
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Two imaging modalities
• Electrical neuronal activity• Non invasive Imaging• High temporal resolution• Problem for localisation
EEG/MEG
• Hemodynamical activity• Non invasive • Spatial resolution ~1mm• Limited temporal resolution
Functional MRI
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Neurobiological principles
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Bases physiologiques de l’ I. C. F.
MetabolismeATP synthesis
Consumption ofGlucose et O2
EEG - MEG
PPSE - PPSIIntracellular ou
extracellular
HemodynamicsDeoxygenation
Blood Flow Increase
TEP
TEP
IRMf
NeuronalAction Potential
D’après B. Mazoyer
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Recordings principlesInstrumentation
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Recorded currents
Quelques mm2
Conduction currents (extracellular)
Current dipole intracellular
Cortical Macrocolumn 105 - 106 neuronesQ =I x d ~10 à 100 nAm
I
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Physical modelisation of the EM fields
Js : source currentJc : conduction current
Jc = E = - grad(V) tissue conductivities
div(Js +Jc) = 0 ====> div(Js) = div[grad(V)]
dv'rr
'rr)JJ(
4)r(B
3cs0
Biot et Savart Law
Maxwell equations in quasistatic approximation (PPSE : 10 ms)
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Electroencephalography (EEG) et Magnétoencéphalography (MEG)
:
MEG : magnetic field measurement.Scale : 10-13 teslaSQUID sensors1st MEG : 1969
EEG : Electric Potential measurements.Electrodes on the head surface
Scale : few microvolts1er EEG : 1929
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MEG INSTRUMENTATION
Detection :
Flux detection : coils+
Flux transformer : squids
SQUIDS : Low Temperature Supra Josephson Junctions
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MEG EEG
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functional MRI : principle
Capillaires
i i
e
BeB
e Be
Bi Bi
BOLD effectBOLD effect Oxyhémoglobine : diamagnetic. Désoxyhémoglobine : paramagnétique.
• local variation of magnetic susceptibility due to the variation of concentration of désoxyhémoglobine (intrisic contrast agent)
• variation of the RMN signal amplitude
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Hemodynamical responseHemodynamical response
Response to a stimulus : slow variation (15 s).
Average on many repetitions
Functional MRI : principle
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Outside B
Inside B
M
ResonanceRadiofrequency B1
B1
B0
Time relaxationsBloch
equations
MRI Physical principle
Proton spins
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IRM screen projecteur
PC
plaque à filtre
MRI acquisition
temps
FMRI sequence
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Data : Structural and functional MRI
IRMfsignal IRMf
IRMa
Transversal relaxation time T2*
Longitudinal relaxation time T1
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Experimental protocols
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Experimental protocols
• Objectives– Reveals cerebral activation linked to a mental process
(cognitive, sensori-moteur...) • Test the activation of a specific area
• Localize the areas activated in a given process
• Find the dynamics of a mental process (chronometry, netwrk dynamics...)
• Localize the origin of the measured fields source reconstruction
?IRMfIRMf
MEEGMEEG
[N. George et A.L. Paradis]
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•Repetition of different tasks and stimuli
•Contrasts between tasks and conditions
• Study on group of subjects
• comparison between different groups
Experimental protocols
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Cognitive substraction
• Equalization of all required processes Except process of interest
• Hypothesis
– The differential cerebral activity of the contrasts TEST - CONTROL reveal only the process of interest
CONTROLProcessOf interest CONTRÔLE _ =
ProcessOf interest
TEST
• constant task and variable stimulus• constant stimulus and variable task • keeping task and stimulus fixed and variable « internal state » [N. George et A.L. Paradis]
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Data Analysis
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Cerebral processing theoriesCerebral processing theories
Functional segregation : spatial cluster of cells having a same functional role.
Functional specialisation : a cortical area is specialized in a (sub-)processing of one (several) function(s).
Functional integration : transitory cooperation of several areas for the realization of one function
Edelman et Tononi, 2001
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Data anaysis principles for specialization
Seggregation :Area localizationChronometrySequential processing
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MEG/EEG analysis : segregation
Sequential processing : evoked potentials
Dawson, 1951
repetition of stimulations and
conditions
reproducibility of neural events
evoked by the condition
(task+stimulus) and subject state
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Interpretation : chronology
Early latencies (<< 200 ms)
Exogeneous waves
• processing in sensory areas or •Depend on the physical properties of the stimulus
Late latencies > ( 200 ms)
Endogeneous waves
• associative and cognitive processing•Depend on the task and subject state
NomenclatureEn EEG: Pxxx ou Nxxx, positif or negative potential peaking at culminant à xxx msEn MEG: Mxxx, magnetif field peaking at xxx ms
N145P100
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Source localisation
Reconstruction in time and space of neural sources at the origin of MEG and EEG surface signals
J?
Inverse problem
• ill posed problem• focal or distributed source models
Direct problem
• conductivity values of head tissues• numerical resolution
CapteurMEG
B(t)
V(t)ElectrodeEEGJ(t)
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Dipolar models
HypothesisFew areas are activated siumltaneouslyFocal activation modeled by one dipolar current
thumbindex
middlelittle
ExampleHand finger somatotopy at 30 ms
Right hand
index Little finger
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Distributed models
ResolutionLinear inverse problemRegularisationOne image for each time sample
HypothesesNo prior on the number of activated areasDistribution of sources normal to the cortical surface Estimation of sources amplitudes
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350-400ms
descent
P. Senot et al., in revision
catch
Senot et al
Application : ball catching
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Temporal series fMRI voxel time
course
Statistical image(SPM)
amplitude
time
General Linear ModelFittingstatistical image
fMRI data analysis
J.B. Poline
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Quantification of voxel activation by a model of the hemodynamic response (function gamma, de Poisson ou gaussienne).
fMRI analysis principle
1 s 15 s
ONOFF
Convolution of the the time serie of the protocol with this function
Test of significativity at each voxel (comparison between bold isgnals and convoluted function) Individual and group statistics
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Gaze direction
Head orientation
direct averted
straight
oblique
fMRI : example
4 experimental conditions :
D’après N. George
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All conditions versus rest
IRM fonctionnelle :results
Fusiform gyrus area : direct versus averted
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Cooperation :Network characterization :Interaction between areasCerebral connectivityParallel processing
Data anaysis principles for cooperation
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Oscillations in MEG/EEG
HypothesesTransient neuronal assemblies (Varela et al, 2001)Any cognitive process corresponds to the emergency of a neuronal assemby distributed, specific, transient and synchronous
Local oscillatory activitiesLocal signs of loop activation Time frequency analysis
Long distance synchronyInteraction between areas (from sensors or sources)Coherence, phase synchronisation
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12
10
8
6
4
0 400 800-400
b 60
40
20
Pui
ssan
ce é
mis
e (
)
12
10
8
6
4
0 400 800-400
a 60
40
20
Fre
quen
ce (
Hz)
Per
cept
ion
Temps (ms)
FR
EQ
UE
NC
E
PERCEPTION NO PERCEPTION
180 -360 ms 180 -360 ms 360 -450 ms360 -450 mssynchronie De-synchrony Absence of synchrony
Rodriguez et al, Nature, 1999
Gamma band : 30 – 60 Hz
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Networks imaging
– Inverse problem + dynamical analysis of synchronies
Cortical sourcesDynamic links
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t
… .. .… …Rivalité Binoculaire
Cosmelli et al
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Functional integrationAnalyses of inter-regional effects :
fMRI analysis for cooperation
From SPM course
Functional connectivity
= the temporal correlation = the temporal correlation betweenbetween spatially remote spatially remote neurophysiologicalneurophysiological events events
Functional connectivity
= the temporal correlation = the temporal correlation betweenbetween spatially remote spatially remote neurophysiologicalneurophysiological events eventsMODEL-free
Effective connectivity
= the influence that the elements = the influence that the elements of a neuronal system exert over of a neuronal system exert over anotheranother
Effective connectivity
= the influence that the elements = the influence that the elements of a neuronal system exert over of a neuronal system exert over anotheranother
MODEL-dependent
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Defined by the correlation of the BOLD signal between regions A and B
Area A
Area B
Ensemble de régions
Functional connectivity
From H. Benali
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R-Cereb Cx
L-Cereb Cx
Ant-Cereb
L-Visual A.
R-Visual A.
R-Pre-Cu
L-Pre-Cu
L-Par Cx
R-Par Cx
R-M1
L-M1
SMA
R-PM
L-PMR-DLPFC
L-DLPFC
Cing
L-Put
R-Put L-Thal
R-Thal
L-CaudN
R-CaudN
r
0
1
Example Motor network
From H. Benali
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Effective connectivity : Dynamical Causal Modelling
Friston et al., NeuroImage, 2003; David et al., NeuroImage, 2006
• Neuronal variables:– Synaptic time constant
– Synaptic efficacy
– Inhibition/Excitation
– Connectivity (networks)
• Macroscopic data at the brain level:– Local field potentials
– Scalp EEG/MEG
– Functional MRI
Forward problemForward problemGiven the generative model, one can Given the generative model, one can predictpredict the measured data the measured data
Inverse problemInverse problemGiven the measured data, one can Given the measured data, one can estimateestimate the generative model the generative model
From O. David
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DCM : forward models
ERP/ERF
EEG/MEG Spatial forward model g
),( xgy
data y
),,( uxfx
Dynamics f
Input u
parameters θ
states x
data y
ssignal
qdHb
s
0
,
vfout
0inf
00
0,
E
EfEf inin
vvolume
0
,
vq
vfout
f
inf
1
s
s
infflow
Ballon model
x(t)
Bold signal
),( xgy
From O. David
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SI
SII SII
input
ForwardBackward
Lateral
27
.68
(1
00
%)
2.6
7 (
10
0%
)
3.57 (99%)
0.95 (53%)
DCM : Somatosensory Evoked Potential
From O. David
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Limits of Brain Imaging
• Large scale observation (1 million neurons)
• Correlation between behavior and brain images no causality (necessary condition)
•Reveal only images linked to the observed task difficult generalisation, multiple parameters
• Brain : dynamical system : do not forget TIME !!!!!!!!!