FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013
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Transcript of FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013
FishNet 2 Collaborative Georeferencing WorkshopLawrence, KS 10-11, Jan 2013
History1999: Creation of original FishNet Network
Z39.50 protocol for sharing data
Search via Species Analyst (distributed query model)
2005: FishNet 2 created
Search via DiGIR Portal (distributed query model)
Harvesting of DiGIR, DwCA, IPT, Static Spreadsheets
Search via FishNet 2 Portal (centralized query model)
2010: FishNet 2 (centralized query model)
Transition to DiGIR Protocol
2012-2016: Portal & data expansion and enhancement
Global network of fish collections
48 data providers
3.2 million lots
30+ million specimens
57% georeferenced
Generalizing FishNet 2:
The Biological Object Search Service (BOSS)
Full Text SearchesCommon Names
SynonymsInstitutional
TemporalGeographic
Enabling Spatial Queries
Search Results
Occurrence Records
GeographicSummary
TaxonSummary
ProviderSummary
Downloading & Visualizing Results
www.fishnet2.net/api/v1/occurrence/?api=myapikey&t=percina aurora
Search API• Characteristics– “REST” like style– Output in CSV or Tab – API Key to track usage
• Services– Taxon– Provider– Occurrence– Occurrence Counts
• Allows integration with research workflows
Percina aurora
> library(rvertnet)> f1=vertoccurrence(t="Hypophthalmichthys molitrix",grp="fish")> f2=subset(f1,Latitude !=0 & Longitude != 0)> world = map_data("world")> ggplot(world, aes(long, lat)) + geom_polygon(aes(group = group), fill = "white",color = "gray40", size = .2) + geom_jitter(data = f2, aes(Longitude, Latitude), alpha=0.6, size = 2.5, color = "red") + opts(title = "Hypophthalmichthys molitrix (Silver Carp)")
http://github.com/vijaybarve/rvertnet
Interoperability: RVertNet
Reporting
ReportingDetails
by the Numbers N
umber of Records
Num
ber o
f Que
ries o
r Visi
tors
Current Project Goals:
To expand the number of records within FishNet to approximately 4 million lots representing over 30 million specimens To georeference all "georeferencable" records lacking geographic coordinates
To repatriate results to source data providers
Georeferencing Collaborators
“Preliminary” Assignments
2 out of 4 million records in need of georeferencing~290,000 locality records