Figure S1

20
Figure S1 A. B. * * * * * * * * * * * * *

description

Figure S1. A. *. *. *. B. *. *. *. *. *. *. *. *. *. *. Figure S2. A. Fold Increase. OxPhos Genes. B. Figure S3. A. ECAR ( mpH /min) or OCR ( pmol /min). C. SEL-Resistant. SEL-Sensitive. Relative Luciferase Activity (ATP). B. SEL-Sensitive. SEL-Resistant. - PowerPoint PPT Presentation

Transcript of Figure S1

Page 1: Figure S1

Figure S1

A.

B.

*

**

*

*

* *

**

*

*

**

Page 2: Figure S1

Figure S2

A.

B.

Fold

Incr

ease

OxPhos Genes

Page 3: Figure S1

Figure S3

Conc

entr

ation

(mm

ol/L

)

SEL-ResistantSEL-Sensitive

B.

Rela

tive

Luci

fera

se A

ctivi

ty (A

TP)

C.

SEL-ResistantSEL-Sensitive

ECAR

(mpH

/min

) or

OCR

(pm

ol/m

in)

A.

SEL-ResistantSEL-Sensitive

Page 4: Figure S1

Figure S4

Sensitivity Groups

OC

R (

pmol

es/m

in)

0

50

100

150

200

250

P < 0.0001 CI >1.0

CI <1.0

Page 5: Figure S1

Figure S5

Dea

d C

ells

(%

)

A. O

CR (p

mol

es/m

in)

B.

PGC1

α [

Trea

tmen

t : M

ock]

C.

Page 6: Figure S1

Figure S6

D24D24_0.5hD24_3hD24_12hD24_24hD29D29_0.5hD29_3hD29_12hD29_24hWM1799WM1799_0.5hWM1799_3hWM1799_12hWM1799_24hUCSD354LUCSD354L_0.5hUCSD354L_3hUCSD354L_12hUCSD354L_24hSKMEL5SKMEL5_0.5hSKMEL5_3hSKMEL5_12hSKMEL5_24hMEL624MEL624_0.5hMEL624_3hMEL624_12hMEL624_24h

JN

K_

pT

183-T

185

C-R

af_

pS

338

HE

R2

eE

F2

p27_p

T157

c-M

et_

pY

1235

ST

AT

3_p

Y705

Mre

11

Chk2_p

T68

NF-k

B-p

65_p

S536

p70S

6K

HE

R3

eE

F2K

alp

ha-C

ate

nin

beta

-Cate

nin

AC

C1

ST

AT

5-a

lpha

PK

C-a

lpha

p21

N-C

ad

heri

nIR

S1

AM

PK

_alp

ha

Akt_

pT

308

Akt_

pS

473

Sm

ad

3G

SK

3-a

-b_p

S21_S

9G

SK

3_p

S9

C-R

af

Tau

mT

OR

_ p

S2448

VA

SP

Syk

EG

FR

_pY

992

VE

GFR

2N

F2

HE

R2_p

Y1248

Shc_p

Y317

4E

-BP

1_p

S65

ME

K1

eIF

4E

4E

-BP

1P

CN

AC

hk2

PR

AS

40_p

T246

p38_p

T180_Y

182

Colla

gen_V

Im

TO

R53B

P1

Notc

h1

PI3

K-p

110-a

lpha

PD

K1_p

S241

p38_M

AP

KH

ER

3_p

Y1298

Dvl

3P

TE

NN

otc

h3

GS

K3-a

-b4E

BP

1_p

T37-T

46

PI3

K-p

85

GA

B2

p53

ER

-alp

ha

c-K

itS

mac

Bim

p27

PK

C-a

lpha_p

S657

YA

PP

-Cad

heri

nE

GFR

Rab

11

EG

FR

_pY

1068

XR

CC

1FO

XO

3a_p

S318_S

321

Src

_pY

416

YA

P_p

S127

MIG

-6E

RC

C1

Sm

ad

1C

asp

ase

-8R

ad

50

Src

GA

TA

3IN

PP

4B

CD

31

PA

RP

_cle

ave

dP

RM

CL-1

E-C

ad

heri

nT

ub

eri

nc-M

et

Bid

FO

XO

3a

Sm

ad

414-3

-3_e

psi

lon

Annexi

n_I

Casp

ase

-7_c

leave

dD

198

Rab

25

JN

K2

Bcl-X

Bcl-xL

DJ-1

Bax

Casp

ase

-9_c

leave

dD

330

Cla

ud

in-7

Cave

olin

-1S

tath

min

Cyc

lin_D

1C

yclin

_E1

K-R

as

Beclin

YB

-1P

axi

llin

Fib

ronecti

nR

ad

51

EG

FR

_pY

1173

AR

Bcl-2

Bcl-2

ER

-alp

ha_p

S118

Bak

Casp

ase

-3_a

cti

veIG

FB

P2

TA

Z_p

S89

FA

KM

EK

1_p

S217_S

221

Snail

c-J

un_p

S73

AM

PK

_pT

172

AC

C_p

S79

p70S

6K

_pT

389

p90R

SK

_pT

359_S

363

MA

PK

_pT

202_Y

204

p27_p

T198

AIB

1S

6_p

S240_S

244

S6_p

S235_S

236

YB

-1_p

S102

PT

CH

c-M

ycC

hk1_p

S345

Chk1

IGF-1

R-b

eta

Cyc

lin_B

1R

b_p

S807_S

811

MS

H6

CD

K1

Rb

MS

H2

Src

_pY

527

XIA

PcIA

PA

kt

CO

X-2

2

1

A.

mTOR1/2 Activity RTK Activation Tumor Suppression MAPK Activity Proliferation

D24D24_0.5hD24_3hD24_12hD24_24hD29D29_0.5hD29_3hD29_12hD29_24hWM1799WM1799_0.5hWM1799_3hWM1799_12hWM1799_24hUCSD354LUCSD354L_0.5hUCSD354L_3hUCSD354L_12hUCSD354L_24hSKMEL5SKMEL5_0.5hSKMEL5_3hSKMEL5_12hSKMEL5_24hMEL624MEL624_0.5hMEL624_3hMEL624_12hME L624_24h

c-M

et_

pY

1235

c-K

itC

yclin

_D1

Fib

ronect

inS

TA

T5-a

lpha

bet

a-C

ate

nin

NF2

Sm

ac

Dvl

3D

J-1

Bcl-X

Paxi

llin

ER

CC

1H

ER

2B

cl-xL

Bid

Bax

JN

K2

p27

_pT

157

eE

F2K

p70

S6K

AC

C_p

S79

AM

PK

_pT

172

MA

PK

_pT

202_Y

204

ME

K1_p

S21

7_S

221

Shc_p

Y31

7H

ER

2_p

Y12

48

EG

FR

_pY

1068

AM

PK

_alp

ha

Notc

h3

Notc

h1

Snail

YB

-1_p

S102

PR

AS

40_p

T246

Akt_

pS

473

NF-k

B-p

65_p

S536

p27

_pT

198

YA

P_p

S12

7IG

FB

P2

4E

BP

1_p

T37-T

46

4E

-BP

1_p

S65

S6_p

S240

_S24

4S

6_p

S235

_S23

6m

TO

R_

pS

2448

p70

S6K

_pT

389

mT

OR

C-R

af

Rb

Cyc

lin_E

1R

b_p

S80

7_S

811

Chk1_p

S345

Cyc

lin_B

1C

DK

1G

AB

2C

hk1

GS

K3-a

-bP

-Cad

heri

nM

SH

6eE

F2

CO

X-2

YB

-1A

IB1

Tub

eri

nA

CC

1V

EG

FR

2P

I3K

-p85

Akt

4E

-BP

1p

21XIA

Pp

38_p

T180

_Y182

Becl

inFO

XO

3aS

rc_p

Y416

53B

P1

c-M

ycB

imIR

S1

HE

R3_p

Y12

98

N-C

adheri

nS

mad

3IG

F-1

R-b

eta

HE

R3

Akt_

pT

308

GS

K3-a

-b_p

S21_S

9G

SK

3_p

S9

Cave

olin

-1cIA

PA

nnexi

n_I

EG

FR

Cla

ud

in-7

ER

-alp

ha_

pS

118

Bak

EG

FR

_pY

992

Bcl-2

PD

K1_

pS

241

ME

K1

eIF

4EP

CN

Ap

38_M

AP

KFA

KB

cl-2

p27

PT

CH

Chk2

PT

EN

VA

SP

Chk2_p

T68

PI3

K-p

110-

alp

ha

Rab

11

AR

Syk

14-3

-3_e

psi

lon

Sm

ad

4p

53Y

AP

TA

Z_p

S89

c-J

un_p

S73

EG

FR

_pY

1173

Rad

51

XR

CC

1M

re11

Sta

thm

inC

asp

ase

-3_a

cti

vep

90R

SK

_pT

359

_S36

3K

-Ras

MC

L-1

PK

C-a

lpha

Rab

25

PK

C-a

lpha_p

S657

Colla

gen_V

IT

auJN

K_

pT

183-T

185

C-R

af_

pS

338

PR

MS

H2

Casp

ase

-9_c

leav

ed

D330

INP

P4B

ER

-alp

ha

Src

Casp

ase

-7_c

leav

ed

D198

PA

RP

_cle

ave

dFO

XO

3a_p

S318_

S321

GA

TA

3S

mad

1E

-Cad

heri

nR

ad

50

MIG

-6C

asp

ase

-8c-M

et

Src

_pY

527

alp

ha-

Cat

enin

CD

31S

TA

T3_p

Y705

2

1

B.

Page 7: Figure S1

P-S6 (S235_S236)

Rela

tive

Prot

ein

Leve

ls

D24 D29 WM1799 UCSD354 SKMEL5 MEL624

P-AKT (T308)

Rela

tive

Prot

ein

Leve

ls

D24 D29 WM1799 UCSD354 SKMEL5 MEL624

Cl. Caspase 7

Rela

tive

Prot

ein

Leve

ls

D24 D29 WM1799 UCSD354 SKMEL5 MEL624

Figure S6

P-MAPK (T202_Y204)

Rela

tive

Prot

ein

Leve

ls

D24 D29 WM1799 UCSD354 SKMEL5 MEL624

C.

Page 8: Figure S1

Figure S6

D.

MAPK & mTOR1/2 Activity Proliferation Apoptosis Tumor Suppression RTK Activation AKT Activity

WM3854_ConWM3854_AZD6244WM3854_AZD8055WM3854_6244+8055WM1361_ConWM1361_AZD6244WM1361_AZD8055WM1361_6244+8055

Snail

C.R

af

JN

K2

Chk1_p

S345

Sm

ad

4C

hk1

p21

YA

P_p

S127

4E

BP

1_p

T37

p70S

6K

_pT

389

S6_p

S240_S

244

S6_p

S235_S

236

Akt_

pS

473

PR

AS

40_p

T246

eE

F2

4E

.BP

1_p

S65

4E

BP

1_p

T70

AC

C1

P.C

ad

heri

nT

ub

erin

Cyc

lin_E

1G

SK

3.a

.bA

kt

Sm

ac

INP

P4B

GA

TA

3c.M

etS

tath

min

Ku80

Beclin

4E

.BP

1R

ad

51

Rb

ER

.alp

ha_p

S118

GS

K3.a

.b._

pS

21_S

9P

DK

1_p

S241

YB

1_p

S102

IGFB

P2

AIB

1C

hk2

AT

M.R

HE

R3

p27_p

T157

14.3

.3.e

psi

lon

p27_p

T198

c.K

itE

RC

C1

PA

RP

_cle

ave

dP

RB

cl.2

GA

B2

ST

AT

5E

.Cad

heri

nP

I3K

.p85

EG

FR

_pY

1068

EG

FR

_pY

1173

NF.k

B.p

65_p

S536

PT

EN

Casp

ase

.9_c

leave

dD

330

Rab

25

Cla

ud

in.

7c.M

et_

pY

1235

Syk

eE

F2K

K.R

as

FA

KM

re11

HE

R3_p

Y1298

CD

31

Casp

ase

.3_a

cti

vep

38_M

AP

KC

asp

ase

.7_c

leave

dD

198

Bim

Bid

PI3

K.p

110.a

lpha

XR

CC

1B

ak

Casp

ase

.8

IGF.1

R.b

eta

cIA

Pc.M

ycS

TA

T3_p

Y705

Cyc

lin_D

1R

b_p

S807_S

811

p90R

SK

_pT

359_S

363

CD

K1

MS

H2

MA

PK

_pT

202

MS

H6

Cyc

lin_B

1P

CN

AeIF

4E

p53

Src

_pY

527

FO

XO

3A

_pS

318_S

321

Bax

C.R

af_

pS

338

B.R

af.

YB

1D

J.1

Colla

gen_V

IM

IG.6

Bcl.X

beta

.Cate

nin

alp

ha.C

ate

ni

np

70S

6K

EG

FR

CD

49

XIA

Pc.J

un_p

S73

Paxi

llin

TA

Z_p

S89

Sm

ad

3N

.Cad

herin

AM

PK

_alp

ha

AR

PK

C.a

lpha_p

S657

VE

GFR

2C

ave

olin

.1

Annexi

n_I

Src

AM

PK

_pT

172

Fib

ronecti

n53B

P1

Page 9: Figure S1

0 500 1000 1500MITF

0.0

0.5

1.0

1.5

2.0

Combination Index

MutationBRAF

NRAS

WT

R2=0.32p=0.03

0 500 1000 1500MITF

50

100

150

200

OCR

MutationBRAF

NRAS

WT

R2=0.54p=0.002

Figure S7

A. B.

Page 10: Figure S1

Figure S7

E.

RLU

WM3854

mRN

A [T

reat

men

t : M

ock]

MEL624C.

mRN

A [T

reat

men

t : M

ock]

WM3854D.

Page 11: Figure S1

Figure S8

DAPI

MITF

Merge

Mock SEL AZD8055 SEL+8055

A.

Page 12: Figure S1

Figure S8

RLU

MEL624B.

** *

RLU

MEL624C.

* * *

Page 13: Figure S1

Figure S8

D.

MEL624

Risc

PGC1

a

MIT

F

mTO

R

RAPT

OR

RICT

OR

RAPO

R+RI

CTO

R

PGC1α

MITF

mTOR

P-AKT(S473)

P-4EBP1(S65)

P-S6(S235/236)

Raptor

Rictor

S6

AKT

WM3854Ri

sc

PGC1

a

MIT

F

mTO

R

RAPT

OR

RICT

OR

RAPT

OR+

RICT

OR

PGC1α

MITF

mTOR

P-AKT(S473)

P-4EBP1(S65)

P-S6(S235/236)

Raptor

Rictor

S6

AKT

Page 14: Figure S1

Rela

tive

Inte

nsity

Figure S9

A.

Mock

B.

2014

8055

Effect of mTORC1/2 Inhibition

C.

Mo

ck

SE

L

AZ

D80

55

SE

L+

AZ

D80

55

PGC1α

MITF

GAPDH

AZ

D20

14

SE

L+

AZ

D20

14

Page 15: Figure S1

Figure S10

% In

hib

itio

n

SEL (mM)

A.

% In

hib

itio

n

B.

SEL (mM)

OCR

(pm

ol/m

in/2

5,00

0 ce

lls)

Time (min)

O F C.

Page 16: Figure S1

P-M

APK

D.

Parental Clone R1 Clone R2

E.

P-S6

Parental Clone R1 Clone R2

Figure S10

Page 17: Figure S1

Figure S11

A375 A375-R1

Inhi

bitio

n (%

)

A375-R2

Concentration (mM) Concentration (mM) Concentration (mM)

A. B. C.

Inhi

bitio

n (%

)

Concentration (mM) Concentration (mM) Concentration (mM)

D. E. F.WM35 WM35-R1 WM35-R2

Page 18: Figure S1

Figure S11

G.

A375

A375-R1

Mock Sel AZD8055 Sel+8055

Page 19: Figure S1

Figure S12

Patient samples

mR

NA

[P

rog

: P

re]

A.

Page 20: Figure S1

Figure S12

59 Melanomas

166 Lung Cancers

172 Hematopoietic & Lymphoid Cancers

Rela

tive

PGC1

a E

xpre

ssio

n

Cancers by Tissue Type

59 Melanomas

B.