3 Untranslated Region-Dependent Degradation of the aceA mRNA
FAULTY FULL NAME · Mahmoud and Hosni 17 . Genetic variations in a conserved 5 - untranslated...
Transcript of FAULTY FULL NAME · Mahmoud and Hosni 17 . Genetic variations in a conserved 5 - untranslated...
1
FACULTY FULL NAME POSITION Associate professor
Personal Data
Nationality |Egyptian
Date of Birth |12/1/1968
Department |Biology
Official UoD Email | [email protected]
Office Phone No. |37278
Language Proficiency
Language Read Write Speak
Arabic Excellent Excellent Excellent
English Excellent Excellent Excellent
French Excellent Good Very good
Academic Qualifications (Beginning with the most recent)
Date Academic Degree Place of Issue Address
1990 BSc Cairo University Egypt
1994 MSc Cairo University-ORSTOM Egypt-France
2001 PhD Cairo University-CIRAD Egypt-France
PhD, Master or Fellowship Research Title: (Academic Honors or Distinctions)
PhD Biological and molecular characteristics of maize yellow stripe virus and its relationship with the leafhopper vector
Master Characterization and serology of the leafhopper-borne maize yellow stripe tenuivirus in Egypt
Fellowship Virus characterization and diagnosis, ORSTOM (Egypt-French project)
Fellowship Molecular characterization and Bioinformatics analysis of MYSV (CIRAD Montpellier, France)
Fellowship Bioinformatics analysis of CTV and its population structure (University of Davis-California, USA)
Professional Record: (Beginning with the most recent)
Job Rank Place and Address of Work Date
Associate professor Imam Abdulrahman Bin Faisal Univ.
Saudi Arabia 3-1-2017
Head of Bioinformatics GEBRI-Sadat Univ. Egypt 2015-2016
2
Dept.
Director manger Alkhwarizmi Center for Bioinformatics, Egypt
Egypt 2013
Associate professor GEBRI-Sadat Univ. Egypt 2012
Assistant professor GEBRI-Sadat Univ. Egypt 2005
Lecturer GEBRI-Sadat Univ. Egypt 2002
Post-Doc fellow UC-Davis USA 2001
Assistant lecturer Plant protection ins. Ministry of agric.
Egypt 1998
PhD fellowship CIRAD-Montpellier France 1995
MSc fellowship French-Egyptian project (ORSTOM)
Egypt 1991
Administrative Positions Held: (Beginning with the most recent)
Administrative Position Office Date
Head of Bioinformatics Dept. GEBRI-Sadat Univ., Egypt 2015
Director manger Alkhwarizmi Center for Bioinformatics, Egypt 2013
Head, community service committee Dept. Biology, College of Science, Imam Abdulrahman Bin Faisal Univ., KSA
2017
Head, administrative system committee GEBRI-Sadat Univ., Egypt 2015-2016
Scientific Achievements
Refereed Scientific Research Papers Accepted for Publication
# Name of Investigator(s) Research Title Journal Acceptance Date
Published Refereed Scientific Researches (In Chronological Order Beginning with the Most Recent)
# Name of Investigator(s) Research Title Publisher and Date of Publication
1 Essam M Janahi; Aboul-Ata E Aboul-Ata; I M El-Kalamawy; Amal Mahmoud; M S El-Ghan-am; Kathleen Hefferon
HBV Genome, HbsAg Isolation and Virotherapy Innovation Using Plant System in the Middle East. HEPATITIS: A GLOBAL HEALTH CONCERN.
1. ISBN: 978-93-87500-05-1 2. 2018
2 3. Elhefnawi, M. M., Hasan, M. E., Mahmoud, A., Khidr, Y. A., El-Absawy, E. A., Hemeida, A. A.
4. Prediction and analysis of three dimensional structure of the p7-transactivated protein1 of hepatitis C virus.
5. Infectious Disorders - Drug Targets. 18.2018
3 Mohamed Ezz, Amal Mahmoud, Fawzy A. El-Feky and Alaa A. Hemeida
6. Searching and Analyzing for a Different Lengths of Microsatellite Repeats in the Completed Genome of Phoenix dactylifera Chloroplast, by Using Regular Expression builder –Language
7. International Journal of Science and Research (IJSR). 6 (8):1296-1301.2017.
4 Salem A. El-aarag, Amal In silico identification of potential key BMC Medical Genomics 10:40.
3
Mahmoud, Medhat H. Hashem, Hatem Abd Elkader, Alaa E. Hemeida and Mahmoud ElHefnawi
regulatory factors in smoking-induced lung cancer
2017
المعلىماتيه الحيىيه...افاق واعذه في تشخيص د. امال محمىد 5
االمراض مجلة التقذم العلمي
4/7102
6 Zidan A. M.; Alaa A. Hemeida and Amal Mahmoud
The target to mediate Nitazoxanide's anti-HCV effect. In-silico study
Edition: 1st, Publisher: LAMBERT academic publishing, ISBN: 978-3-659-92424-8 (2016)
7 Nadia S. El-Nahas, Gehan S. Sadek, Amal Mahmoud, Amany A. Rady, Salwa, F. Oshiba and Reham M. Barakat.
Immunological, histopathological and immunohistochemical responses to a new B cell epitope-based vaccine against leishmaniasis in experimental mice.
Journal of American Science 11(7). 2015 .
8 8. Amal Mahmoud and Medhat H. Hashem
Bioinformatics analysis of polymerase and envelope genes of Hepatitis B virus in Egypt.
Egyptian J. Virol. 11 32-37. 2014
9 9. Zidan A. M.; Alaa A. Hemeida; Amal Mahmoud and Medhat H. Hashem
Glycogen synthase kinase 3 β prediction as primary cellular target to mediate the anti-hepatitis C effect of nitazoxanide. Int. Res. J. pharm. 4(11): 37-39.
.Int. Res. J. pharm. 4(11): 37-39. (2013).
10 10. Ibrahim, A. I , Hemida A. A.,
Amal M. Hussain, Bekhit, M.
and Amal , A. Zweil.
11. Comparative Studies On Catharanthus
sp. Cultivars using Chlorophyll Content
and Peroxidase Isozyme.
12. J. product. & Dev.,
13. 18(1):77-84. (2013).
11 14. El-Absawy, E.A; Amal
Mahmoud, A.A. Hemeida and
M. Helmy
Molecular variation of Potato virus Y isolated from Egypt. International J. Virol.
8 (1) 81-89. (2012).
12 15. Zaghloul, A. H., Mahmoud,
Amal, Hassan, H. Y., Hemeida,
A. A., Nayel, M. A. and
Zaghawa, A. A.
16. Establishment of dot-blot hybridization
for diagnosis of bovine ephemeral
fever virus in Egypt.
International J. Virol.
8 (3) 271-278. (2012).
13 17. Amal Mahmoud and Medhat H.
Hashem.
18. Phylogenetic subtyping of hepatitis C
virus 5' UTR isolated in Egypt and the
effect of 2 transitions in subdomain IIId
on the apical loop structure.
19. Life Science J.
20. 9 (1). (2012).
14 21. Mahmoud, A.
22. Comparative sequence analysis and
epitope prediction of the partial
glycoprotein G gene of bovine
ephemeral fever virus isolate from
Egypt.
23. Egyptian J. Virol.
24. 9 (1) 49-58. (2012).
15 25. Khidr, Y. A. Mahmoud, A. El-
Absawy, E. A. Hemeida, A.A.
and Hasan, M. E.
26. Production of Transgenic Cucumber
Plantlets containing Sequences from
Watermelon Mosaic Virus-II fused with
GFP Gene.
27. Journal of genetics and cytolo ,
41(1): 19-35. (2012).
4
16 El-Absawy, E. A ,Khidr, Y. A.
Mahmoud, A., Hasan, M. E. and
Hemeida, A. A.
Somatic Embryogenesis and Plant
Regeneration Induced from Mature
Seeds, Cotyledons and Shoot Tips of
Cucumber. Journal of Productivity and
Development.
28. Journal of Productivity and
Development. J. Produt. & Dev.,
29. 17(2): 193-209. 2012.
17 30. Hemeida, A. A.; M. Osman;
Mohamed El-Shahat; Medhat
H. Hashem; Amal Mahmoud
and Hosni Dahi
31. Genetic variations in a conserved 5'-
Untranslated region of hepatitis C virus
isolated from Egypt.
32. International J. Virol,
33. 7(3) 91-99. 2011.
18 34. Ammar E.-D., Aboul-Ata A.
E.and Mahmoud, A.
35. Maize virus diseases, “in Virus Diseases
affecting crops in the Arab world”.
36. Beirut, Lebanon,
37. 970 pp. 2009.
19 38. El-Araby, W., S., Ibrahim, I., A.,
Hemeida, A., A., Mahmoud,
Amal, Soliman, A. M. El-Attar,
A. K., and Mazyad, H. M.
39. Biological, serological and molecular
diagnosis of three major potato viruses
in Egypt. International journal of virology 5 (2): 77-88. 2009.
20 Ibrahim A. I, Hemeida A. A, Nower, A. A., Amal Mahmoud, Salwa N. Zein and Asmaa abdelmordy.
Antiserum production and molecular detection of Potato virus X and Potato virus Y.
Egyptian J. Virol., 6:273-285(2009).
21 40. Ammar E.-D., Khlifa E. A.,
Mahmoud A., Abol-Ela S. E. and
Peterschmitt M.
Evidence for multiplication of the leafhopper-borne maize yellow stripe virus in its vector using ELISA and dot-blot hybridization.
Arch Virol 152: 489-494(2007).
22 41. Mahmoud A., Royer M.,
Granier M., Ammar E.-D. and
Peterschmitt M.
High genetic identity between RNA 3 segment of an Old World isolate and a New World isolate of Maize stripe virus.
Arch Virol 152: 1583-1586. (2007).
23 42. Mahmoud A., Royer M.,
Granier M., Ammar E.-D.,
Thouvenel J.-C. and
Peterschmitt M.
Evidence for a segmented genome and partial nucleotide sequences of Maize yellow stripe virus, a proposed new tenuivirus.
. Arch Virol 152: 1757-1762(2007).
24 43. Mahmoud A.
Ph.D. (Biological and molecular characteristics of maize yellow stripe virus and its relationship with the leafhopper vector)..
Ph.D. thesis, Cairo University, pp154(2001).
25 44. Mahmoud A. H., Thouvenel J.
C., Abol Ela S. E., Sewify G. H.
and Ammar E. D.
Detection of maize yellow stripe tenui-like virus by ELISA and dot-blot tests in host plants and leafhopper vector in Egypt.
Phytopath. medit. 35, 19-23(1996).
26 45. Thouvenel J. C., Abol Ela S. E.,
Sewify G. H., El-Hariry M.,
Mahmoud A. H. and Ammar E.
D.
Characterization and serology of the leafhopper-borne maize yellow stripe tenuivirus in Egypt.
Bull. Fac. Agric., Cairo Univ. 47, 179-190. (1996).
27 46. Amal Mahmoud Hussein et Diagnostic du virus des rayures jaunes Nouvelles scientifiques. PP 78(1995).
5
Laurent Bigarre. du mais en Egypte.
28 Mahmoud, A. M. Sc. (Characterization and serology of the leafhopper-borne maize yellow stripe tenuivirus in Egypt).
M.Sc. thesis, Cairo University, pp75 (1994).
Scientific Research Papers Presented to Refereed Specialized Scientific Conferences
# Name of Investigator(s) Research Title Conference and Publication Date
1 1. Mahmoud M. El Hefnawi, Mohamed E. Hasan, Amal Mahmoud, Yehia A. Khidr, El-Sayed A. El-Absawy and Alaa A. Hemeida
2. 3-D structure prediction and analysis of the p7-transactivated protein1 of hepatitis C virus.
The 6th
international conference of the Egyptian society of virology " Viral risks and environmental changes, the role of national & international organization". Hurghada, Egypt on 29November-2 December, 2016.
2 3. Mohamed Ezz, Amal Mahmoud, Fawzy El-Tohamy and Alaa A. Hemeida
4. Detection and Comparative Analysis of the Tandem Repeats Motifs in the Completed Genomes of Human Coronavirus (Hku1) By Using Regular Expression Finder Tool.
The 6th
international conference of the Egyptian society of virology " Viral risks and environmental changes, the role of national & international organization". Hurghada, Egypt on 29November-2 December, 2016.
3 5. Amal Mahmoud, Reham
M. Barakat,
Nadia S. El-
Nahas, Gehan S. Sadek,
Amany A. Rady and
Salwa F. Oshiba.
6. Evaluation of Immune Response
Against Leishmaniasis in Vaccinated
Experimental Mice by Different
Antigenic Epitopes.
7.
1st
international conference of Genetic Engineering and Biotechnology Research Institute” Integrative science and biotechnology”. Sharm El-Sheikh, Egypt on 26-29 April, 2016.
4 8. Amal Mahmoud and
Medhat H. Hashem.
9.
10. Bioinformatics analysis of the S Gene of Hepatitis B Virus in Egypt.
The 5th
international conference of the Egyptian society of virology "Viruses and their potential hazard to human, animal and plant, the role of national & international organization". Hurghada, Egypt on 9-12 December, 2014.
5 11. Amal Mahmoud, Maria
Tsompana, Hany Sheta,
Elizabeth Grafton-
Cardwell, MaryLou
Polek, J. Gumpf, D, and
Diane E. Ullman.
12. Aphid Transmission of Citrus tristeza virus Reduces Nucleotide Diversity and Results in Genotype Alteration and Fixation of New Amino Acid Substitutions in the Leader Proteinase Domain L2.
The 4th
International Conference of Virology "Towards strategy fo controlling viral pathogens". Sharm El-Sheikh, Egypt on 14-16 November, 2012, pp. 67.
6 13. El-Absawy, E. A., Amal
Mahmoud, Hemeida, A.
A., and Helmy, M.
14.
15. Molecular variation of Potato virus Y isolated from Egypt.
The 3rd
international conference of the Egyptian society of virology "Current challenge of viral diseases". Cairo University, Egypt on 24-25 November, 2010.
7 16. Hemeida, A. A.; M.
Osman; Mohamed El-
Shahat; Medhat H.
Hashem; Amal
Mahmoud and Hosni
17. Genetic variations in a conserved 5-
untranslated region of hepatitis C virus
genome isolated from Sohag
governate-Egypt.
18.
The 3rd
international conference of the Egyptian society of virology "Current challenge of viral diseases". Cairo University, Egypt on 24-25 November, 2010.
6
Dahi.
8 19. Zaghloul,
A. H., Amal
Mahmoud, Hassan, H. Y.,
Hemeida, A. A.,
Zaghawa,
A. A. and
Nayel, M.
20. Establishment of Dot-Blot Hybridization For Diagnosis of Bovine Ephemeral Fever Virus In Egypt.
The 3rd
international conference of the Egyptian society of virology "Current challenge of viral diseases". Cairo University, Egypt on 24-25 November, 2010.
9 21. Ibrahim, A. I., Mazyad, H.
M., Hemeida, A. A., Amal,
Mahmoud, Soliman, A.
M., El-Attar, A. K. and El-
Araby, W. S.
Comparative study for the detection of three major potato viruses using several molecular and serological methods
. “New Life Sciences: From Promises to Practice” Bio Vision Alexandria 12-16 April 2008, poster presenter's pp. 2.2008.
10 22. Ibrahim, A. I., Mazyad, H. M., Hemeida, A. A., Amal, Mahmoud, Soliman, A. M.; El-Attar, A. K. and El-Araby, W. S.
23. Biological studies, serological and molecular diagnosis of three major potato viruses in Egypt.
The Second International Conference of Virology "Emerging and Exotic Viral Infection, Challenging Threats of Human, Animal and Plant Health" 5-6 April, 2008, pp24. 2008
11 24. Ammar E.D., Mahmoud
A., Khlifa E., Granier M.,
Peterschmitt M.
25. Evidence for multiplication of the
leafhopper-borne maize yellow stripe
tenui-like virus in its vector and
suggestion of a new genus for
tenuiviruses [Abstract].
26.
Advances in plant virology : A three day International conference at CIRAD, Montpellier, France on 29 September - 1 October 2003. Wellesbourne : Association of Applied Biologists, 1 p.. International Conference : Advances in Plant Virology, 2003-09-29/2003-10-01, Montpellier, France. 2003.
12 27. Diane E. Ullman, Amal
Salem, Hany Sheta and
Bryce W. Falk.
28. Is aphid transmission of Citrus tristeza virus (CTV) a genetic bottleneck?. The
ESA Annual Meeting and Exhibition Fort Lauderdale, FL. USA, November, 2002.
13 29. Mahmoud A., Sheta H.,
Grafton-Cardwell E.,
polek M., Gumpf D., Falk
B. and Ullman D.
30. The role of aphid transmission in Citrus tristeza virus population structure. The
American society of virology (ASV) meeting. University of Kentucky, USA on 21-24 July, 2002.
14 31. Mahmoud A., Granier
M., Peterschmitt M.,
Abul-Ela S. and Ammar E.
D.
32. Multiplication of maize yellow stripe virus in its leafhopper vector, Cicadulina chinai.
First conference on Integrated Pest Management (IPM) At the college of Agriculture, Cairo University, Giza, Egypt on 22
nd-23
rd April, 2001.
15 33. Mahmoud A. H., Royer
M., Granier M., Ammar
E. D., Thouvenel J. C. and
Peterschmitt M.
34. Biological and molecular characterization of the leafhopper-borne maize yellow stripe tenuivirus from Egypt.
Societe Francaise de Phytopathologie., Proceedings of the 10
th congress of the mediterranean
phytopathological union. June 1st
-5th
, 1997, Montpellier, France. P. 349-350. 1997.
Completed Research Projects
# Name of Investigator(s) Research Title Report Date
7
(Supported by)
1 Zaghloul, A. H., Mahmoud, Amal, Hassan, H. Y., Hemeida, A. A., Nayel, M. A. and Zaghawa, A. A.
The application of molecular
biology for diagnosis of bovine
ephemeral fever in cattle "
47. Establishment of dot-blot hybridization
for diagnosis of bovine ephemeral fever
virus in Egypt.
2007
Current Researches
# Research Title Name of Investigator(s)
1 Project: Bioinformatics analysis of bacterial alkaline Proteases in Saudi Arabia
Amal Mahmoud, Amany Alqosaibi and Essam Kotb
2 Project: Bioinformatics screening of bacterial species in Saudi Arabia
Amal Mahmoud, Amany Alqosaibi and Essam Kotb
3 Project: Production of pathogen-free minitubers of potato in New Wadi governorate
Ibrahim Abd Almaksoud, Taymoor and Amal Mahmoud
4 In silico analysis of complete genome of Watermelon chlorotic stunt virus
Adel Sabour, Amal Mahmoud
5 In Silico Discovery of novel Hepatitis C Virus P7-transactivated Protein1 Inhibitor by using Structure-Based Virtual Screening
Mahmoud M. El Hefnawi, Mohamed E. Hasan, Amal Mahmoud Yehia A. Khidr, El-Sayed A. El-Absawy , Alaa A. Hemeida
6
Molecular identification of populations of bacteria associated
with samples of stored rice in Saudi Arabia
Amal Mahmoud, Sahar Eldousary, Ekbal Khedr
7 Detection and Comparative Analysis for the Tandem Repeats Motif in the Completed Genomes of Human Coronavirus (Hku1) by Using Regular Expression Finder Tool
Mohamed Ezz , Amal Mahmoud
8 Functional genomic analysis for stem rust resistance in durum
wheat (T.turgidum L. subsp. Durum)
Lamiaa Salah el den el said, Amal
Mahmoud,
Aminaabd el hamed, and Alaa A. Hemeida
Identification of molecular markers linked to stem rust resistance gene in Egyptian Durum Wheat cultivars
Lamiaa Salah el den el said, Amal
Mahmoud, Amina abd el hamed, Doaa
R.
EL-Naggar, and Alaa A. Hemeida
Contribution to Scientific Conferences and Symposia
# Conference Title Place and Date of the Conference Extent of Contribution
1 Viral risks and environmental changes, the role of national & international organization
Hurghada, Egypt on 29November-2 December, 2016
Attendant
2 1st
international conference of Genetic Engineering and Biotechnology Research Institute” Integrative science and biotechnology”
Sharm El-Sheikh, Egypt on 26-29 April, 2016
Speaker
3 The 5th
international conference of the Egyptian society Hurghada, Egypt on 9-12 Poster
8
of virology "Viruses and their potential hazard to human, animal and plant, the role of national & international organization".
December, 2014.
4 35. The 4th
International Conference of Virology "Towards
strategy fo controlling viral pathogens".
Sharm El-Sheikh, Egypt on 14-16 November, 2012, pp. 67.
Speaker
5 The 3rd
international conference of the Egyptian society of virology "Current challenge of viral diseases".
Cairo University, Egypt on 24-25 November, 2010
attendant
6 “New Life Sciences: From Promises to Practice” Bio Vision Alexandria 12-16 April 2008, poster presenter's pp. 2.
Poster
7 The Second International Conference of Virology "Emerging and Exotic Viral Infection, Challenging Threats of Human, Animal and Plant Health
Cairo, 5-6 April, 2008, pp. 24. Attendant
8 Advances in plant virology: A three day International
conference at CIRAD, Montpellier, France on 29
September - 1 October 2003. Wellesbourne: Association
of Applied Biologists, 1 p.. International Conference :
Advances in Plant Virology,
2003-09-29/2003-10-01, Montpellier, France.
Poster
9 36. The American society of virology (ASV) meeting. University of Kentucky, USA on 21-24 July, 2002.
poster
10 37. First conference on Integrated Pest Management (IPM) College of Agriculture, Cairo University, Giza, Egypt on 22
nd-
23rd
April, 2001.
Speaker
11 38. Societe Francaise de Phytopathologie., Proceedings of
the 10th
congress of the mediterranean
phytopathological union.
June 1st
-5th
, 1997, Montpellier, France. P. 349-350.
poster
Membership of Scientific and Professional Societies and Organizations
Member, Egyptian Society of Virology (ESV)
Member, scientific projects committee
Teaching Activities
Undergraduate
# Course/Rotation Title No./Code Extent of Contribution (no. of lectures/Tutorials. Or labs, Clinics)
1 Cytology BIOL 142N 13 lectures
2 Cell biology BIOL 206 Lab advisor
3 Parasitology BIOL 343N Lab advisor
4 Immunology BIOL 442N Lab advisor
5 Molecular Biology BIOL 401N 14 Lectures
6 Molecular Biology BIOL 401N 14 Lectures
7 Molecular Biology BIOL 401N Lab advisor
8 Molecular Biology BIOL 401N Lab advisor
9 Molecular Biology BIOL 401N Lab advisor
10 Principle of Genetics GENETC 304 Lab advisor
11 Graduation project BIOL 448N 14 discussions/5 students
9
12 Molecular Biology GENETC 308 14 Lectures
13 Molecular Biology GENETC 308 Lab advisor
14 Graduation project BIOL 448N 1 student
Lab advisor تحضيرات مجهريه 15
16 Bioinformatics BIOL401 15 lectures
17 Bioinformatics BIOL401 Lab advisor
18 Principle of Genetics GENETC 304 14 lectures
19 Principle of Genetics GENETC 304 Lab advisor
20 Graduation project BIOL 448N 3 students Brief Description of Undergraduate Courses Taught: (Course Title – Code: Description)
1 Cytology BIOL 142N:
Studying cell organelles: structure, function. Diagnosis of cell changes and pathogens.
2 Molecular Biology BIOL 401N
This course focus on the genome analysis: Genome structure, Replication, transcription and
translation, mutation, gene regulation and genetic engineering Postgraduate
# Course/Rotation Title No./Code Extent of Contribution (no. of lectures/Tutorials. Or labs, Clinics)
1 Advanced physiological microbiology MICRO 574 10 Labs
2 Nucleic acid sequence analysis (MSc) B8-10 Lectures/labs
3 Proteomics (PhD) B8-21 Lectures/labs
4 Protein sequence analysis (MSc) B8-20 Lectures/labs
5 Sequence analysis (PhD) B8-22 Lectures/labs
6 Bioinformatics (MSc) B8-2 Lectures/labs
7 Seminars (MSc/PhD) B8-24 Lectures
8 Special topics (MSc/PhD) B8-23
9 Molecular methods in virology - Lectures
10 Advanced and general virology - Lectures
11 Fundamentals of plant virology - Lectures
12 Plant diseases - Lectures
13 Transgenic plants Lectures
14 Diagnosis and control of plant diseases Lectures
Brief Description of Postgraduate Courses Taught: (Course Title – Code: Description)
10
1 Advanced physiology of microbiology MICRO 574 :
identification of pathogens using bioinformatics tools
2 Nucleic acid sequence analysis B8-10
studying sequence at the level of nucleic acid , detect different types of mutations
3 Proteomics B8-21:
use bioinformatics tools to study the genome at the protein level
4 B8-20 protein sequence analysis
the course focus on analyzing the amino acid sequence and the related substitutions
5 B8-22 sequence analysis
This course focus on how the student retrieve and submit different types of sequences to biological
databases
6 Bioinformatics B8-2
This course describe basics of bioinformatics, how to use different biological databases.
7 Methods in molecular virology
In this course students will learn how to use different methods for virus diagnosis at the level of
nucleic acid and protein
8 Advanced molecular virology
This course focus on genome expression details, virus evolution, and diagnosis
9 Fundamentals of pant virology
Basics of virus identification , isolation, diagnosis and control
10 Plant diseases
Methods of identification and diagnosis, control of pathogens
11 Transgenic plants
Methods of producing transgenic plants
12 Diagnosis and control of plant diseases
In this course students learn how to use different methods for diagnosis and control of pathogens
Course Coordination
# Course Title and Code Coordination Co-coordination Undergrad. Postgrad. From to
1 Cytology- BIOL 142N yes - yes - 2017 2018
2 Advanced physiology of microbiology
Practical coordination
- - yes 2017 2017
3 Molecular Biology Practical coordination
- yes - 2017 2018
Guest/Invited Lectures for Undergraduate Students
# Activity/Course Title and Code
Subject College and University or Program Date
11
Student Academic Supervision and Mentoring
# Level Number of Students From to
Supervision of Master and/or PhD Thesis
# Degree Type
Title Institution Date
1 PhD Protein structure prediction by Bioinformatics tools
Bioinformatics department, GEBRI, Sadat University
2017
2 PhD Immunological, histopathological and immunohistochemical responses to a new B cell epitope-based vaccine against leishmaniasis in experimental mice
Faculty of medicine, Menoufia University
2015
3 MSc Computational prediction of the protein kinase
that mediates the anti-HCV effect of
nitazoxanide
Bioinformatics department, GEBRI, Sadat University
2014
4 MSc In silico identification of drug targets in lung cancer
Bioinformatics department, GEBRI, Sadat University
2014
5 MSc Studies on molecular variations of potato virus X and Y in Egypt
Plant Biotechnology department, GEBRI, Sadat University
2012
6 MSc In Vitro Production Of Specific Pathogen Tested Potato Plants
Plant Biotechnology department, GEBRI, Sadat University
2010
7 MSc Development and Standardization of Rapid and Sensitive viral Detection Methods Based on Molecular Biology for the Diagnosis of Some Potato Viruses
Plant Biotechnology department, GEBRI, Sadat University
2008
Ongoing Research Supervision
# Degree Type
Title Institution Date
1 PhD Detection and Comparative Analysis for the
Tandem Repeats Motif / Microsatellite Repeats
in the Completed Genomes by Using Regular
Expression Finder Tool
Bioinformatics department, GEBRI, Sadat University
2014
2 PhD Computational Design and Selection of
Optimal Materials as biosensor for detection of
viral diseases
Bioinformatics department, GEBRI, Sadat University
2016
3 PhD Functional genomic analysis for stem rust Bioinformatics department, GEBRI, Sadat University
2014
12
resistance in durum wheat (T.turgidum L. subsp.
Durum)
4 PhD Bioinformatics and Pharmacogenomics in
personalized cancer medicine
Introduction
Bioinformatics department, GEBRI, Sadat University
2015
5 PhD Genetic guided clinical pharmacy: right drug,
right dose, and right time prediction based on
patient's genetic profile.
Bioinformatics department, GEBRI, Sadat University
2015
6 PhD Genetic guided clinical pharmacy: right drug,
right dose, and right time prediction based on
patient's genetic profile.
Bioinformatics department, GEBRI, Sadat University
2015
Administrative Responsibilit ies, Committee and Community Service (Beginning with the most recent) Administrative Responsibilities
# From To Position Organization
1 2015 2016
Head of Bioinformatics Dept. GEBRI-Sadat University, Egypt
2 2013 Present Director manger Alkhwarizmi Center for Bioinformatics, Egypt
Committee Membership
# From To Position Organization
1 2018 present Head of genetics scientific research Dept. Biology, College of Science, Dammam Univ., KSA
2 2018 2018 Member, promotion committee Dept. Biology, College of Science, Dammam Univ., KSA
3 2017 present Member, scientific research committee Dept. Biology, College of Science, Dammam Univ., KSA
4 2017 present Member, postgraduate committee Dept. Biology, College of Science, Dammam Univ., KSA
5 2016 2016 Member-Scientific projects committee GEBRI-Sadat Univ. Egypt
6 2016 2016 Member-Course specification-dept. bioinformatics committee
GEBRI-Sadat Univ. Egypt
6 2015 2015 Member-Course specification-dept. plant biotechnology committee
GEBRI-Sadat Univ. Egypt
Scientific Consultations
# From To Institute Full-time or Part-time
2016 2016 Society and environment committee-Sadat Univ-Egypt Part-time
2013 2016 Alkhwarizmi for Bioinformatics Part-time
13
2005 2005 Viral diagnosis-Farm fries company- Sadat Univ-Egypt Part-time
Volunteer Work
# From To Type of Volunteer Organization
2013 2016 Personal skills topics Facebook
Personal Key Competencies and Skills: (Computer, Information technology, technical, etc.)
1 Online training course, educational videos
2 Personal skills
Last Update
12/9/2018