Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012...
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![Page 1: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/1.jpg)
Exploiting a natural conformational switch to engineer
an interleukin-2 ‘superkine’
May 22, 2012
Joseph Argus, Pardeep Singh, Uland Lau
![Page 2: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/2.jpg)
IL-2• IL = interleukin = cytokine of immune system• 15.5 kD, variably glycosylated• Necessary for growth and function of T cells• Promotes differentiation and proliferation of
natural killer cells• Used in clinic to upregulate immune system
(chronic viral infection, adjuvant for vaccines, cancer therapy)
• Also adverse effects, at least partially due to upregulation of Treg cells
![Page 3: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/3.jpg)
Goal: Create modified IL-2 that stimulates cytotoxic T cells and natural killer cells with
less Treg activation (fewer side effects)
![Page 4: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/4.jpg)
IL-2 Receptor
• Treg and cytotoxic T both contain low levels of beta and gamma
• Only Treg contain high levels of alpha (in resting state)• Locking IL-2 in the active (purple) conformation will bypass
the need for alpha and increase the relative proportion of cytotoxic:regulatory T cell activation
![Page 5: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/5.jpg)
Summary:
• Developed versions of IL-2 (“superkines”) that bypass the need for the alpha subunit of receptor using directed evolution
• Verified nature of mutations using physical biochemistry, crystallography
• Verified biological significance using:– in vitro assays (pSTAT5)– in vivo assays (splenic lymphocyte number, tumor
volume, and lung metastases)
![Page 6: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/6.jpg)
Directed Evolution
![Page 7: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/7.jpg)
![Page 8: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/8.jpg)
![Page 9: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/9.jpg)
-Five of the six mutations clustered on the B-C loop and within the C helix core.-V85, F80, andV86 substitutions appeared to collapse into a hydrophobic cluster to stabilize the loop by fixing helix C into the core of the molecule.
Crystallization of D10 IL-2 superkine
![Page 10: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/10.jpg)
Low-resolution structure of D10 ternary complex
-Is this heterodimeric architecture the same when D10 binds as compared with wild type IL-2?Answer-Found to be essentially identical r.m.s.d.=0.43 angstoms
![Page 11: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/11.jpg)
Conformation of unliganded IL-2/D10 and ligand bound CD25
-Unliganded D10 is conformationally similar to the IL-2Ralpha[CD25] as compared to the unliganded IL-2
![Page 12: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/12.jpg)
Molecular Dynamics simulations of IL-2 and D10
-Analysis of anatomically detailed Markov state models showed that D10 was more stable than IL-2-B/B-C/and C all had lower visible deviations compared to wild type IL-2
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Comparison of average IL-2 wt vs.D10
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Conclusion from set of experiments
• The reduced flexibility of helix C in the IL-2 superkine is due to improved core packing with helix B.
• Structural and molecular dynamics results show that evolved mutations cause a conformational stabilization of the cytokine, reducing the energetic penalties for binding to IL-2Rβ.
![Page 15: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/15.jpg)
Dose response curves using flow cytometry to assay STAT5
phosphorylation
Absence of CD25 Presence of CD25
-Do IL-2 superkines demonstrate signal potencies?-Do they depend on cell surface expression of CD25?
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Probing CD25-independence with a mutation of IL-2
• F42A= Phe 42 replaced with Ala. Reduces binding to CD25 by 220-fold for H9 and 120-fold for IL-2.
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Dose response curves on T cells from mice with absent CD25.
Flow cytometry fluorescence assaySuperkines=spread throughout/low density.
IL-2=concentrated/ lacks replication/ high density.
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Antitumor activities of IL-2 superkine
• IL-2 superkine H9, wildtype IL-2, and IL-2-anti-IL-2 mAb effects on CD25low vs CD25high T cells
• IL-2-anti-IL-2 mAb– Shown to reduce pulmonary
edema and have potent antitumor responses in vivo
• Memory-phenotype (MP) CD8+ T cells– Low levels of CD25– High levels of IL-2Rβγ
• Regulatory T (Treg) CD4+ cells– High levels of CD25
![Page 19: Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’ May 22, 2012 Joseph Argus, Pardeep Singh, Uland Lau.](https://reader035.fdocuments.in/reader035/viewer/2022070403/56649f285503460f94c40715/html5/thumbnails/19.jpg)
Different tumor models
• Mice injected subcutaneously with B16F10 melanoma cells, murine colon carcinoma, and Lewis lung carcinoma
• Treatments:– PBS-control– High-dose IL-2– IL-2-anti-IL-2 mAb complexes– H9 IL-2 superkine
• PBS-control : tumor reached 1500 mm3 at day 18
• IL-2 treatment: delayed as much as 39% at day 18
• Similar effects between IL-2-anti-IL-2 mAb and H9 IL-2 superkine– Reduced tumor growth by more than 80%– Compared to IL-2, >70% reduction
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Conclusions
• Engineered IL-2 superkine via in vitro directed evolution
• Eliminated CD25 dependency of IL-2• Increased binding infinity towards IL-2Rβ• IL-2 superkine elicited proliferation of T cells
irrespective of CD25 expression• Improved antitumor responses in vivo (reduced
pulmonary edema)• Showed activation of cytotoxic CD8+ T cells
and NK cells – antitumor immune response• Minimal toxicity