EXPERT COMMITTEE ON BIOLOGICAL STANDARDIZATION … · WHO/BS/2015.2262 Page 4 WHO HCV NAT IS...
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WHO/BS/2015.2262
ENGLISH ONLY
EXPERT COMMITTEE ON BIOLOGICAL STANDARDIZATION
Geneva, 12 to 16 October 2015
Collaborative Study to Evaluate the Proposed 5th WHO International
Standard for Hepatitis C Virus (HCV) RNA for Nucleic Acid Amplification
Technique (NAT)-Based Assays
Clare Morris1,3
, Graham Prescott1, Jason Hockley
2 and the Collaborative Study
Group*
1 Division of Virology and 2 Biostatistics, National Institute for Biological Standards and Control,
South Mimms, Potters Bar, Herts, EN6 3QG, UK
3 Study Coordinator; Tel +44 1707 641236, Fax +44 1707 641060,
E-mail: [email protected]
* See Appendix 8
NOTE:
This document has been prepared for the purpose of inviting comments and suggestions on the
proposals contained therein, which will then be considered by the Expert Committee on
Biological Standardization (ECBS). Comments MUST be received by 14 September 2015 and
should be addressed to the World Health Organization, 1211 Geneva 27, Switzerland, attention:
Technologies, Standards and Norms (TSN). Comments may also be submitted electronically to
the Responsible Officer: Dr M Nübling at email: [email protected]
© World Health Organization 2015
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Summary The previous 4
th HCV IS for NAT (NIBSC code 06/102) was established in 2011, however it
was recognised that the material must be shipped on dry ice in order to prevent loss of titre
during an ambient shipping process.
A small pilot study was conducted at NIBSC to determine the possible effect that the presence or
absence of HCV antibodies may have on the stability of a lyophilised preparation. Following the
assessment of six lyophilised formulations containing lyoprotectants and stabilizing buffers in
the presence and absence of antibodies to HCV, by six laboratories using different commercial
assays, no differences were observed. It was subsequently agreed at the 3rd
joint meeting of the
Blood Virology and Clinical Diagnostics Standardisation of Genomic Amplification Techniques
meeting held on 30/31st May 2014 in Graz, Austria that a candidate standard for the 5th
HCV IS
NAT would comprise an antibody negative preparation of genotype 1a.
The candidate 5th
HCV IS for NAT (NIBSC code 14/150) was filled and freeze dried at NIBSC
in November 2014, 1980 vials were lyophilised with a reconstitution volume of 1.1mL to allow
for single vial use on analysers requiring a 1mL input volume. The subsequent international
collaborative study was performed from December 2014 to March 2015. 17 laboratories from 11
countries participated in the evaluation of 6 samples including the lyophilised candidate standard
and the corresponding frozen liquid bulk. HCV antibody positive plasma and a low titre material
intended for use as a secondary reference material were also assessed. Assays comprised mainly
of commercial real time PCR methods reporting in both quantitative and qualitative values. The
current 4th
HCV IS and the previous 2nd
IS were both included giving the option of deriving
potency comparative to the 2nd
standard.
The range in individual laboratory mean estimates for the candidate material (S5) in quantitative
assays was 4.60 – 5.72 log10 IU/mL and 4.43 – 4.81 log10 IU/mL in qualitative assays. Standard
deviation values for intra laboratory comparisons were low.
Accelerated thermal degradation studies indicate good stability at 3 months however at 6 months
a loss of 0.14Log is observed at +20°C relative to the -20°C baseline sample. Further studies on
real time stability are on-going.
Overall, the results of this study indicate the suitability of the candidate to be established as the
replacement 5th WHO International Standard for HCV (NIBSC code 14/150) with an assigned
potency of 5.0 log10 IU/vial when reconstituted in 1.1mL of nuclease-free water.
Introduction The availability of an international standard for HCV RNA for the past 20 years (1-7) has been
fundamental in driving the close agreement now seen across HCV nucleic acid tests, giving
assurance of results regardless of assays used. HCV RNA assays are used in both a screening
and diagnostic capacity, with regulations in developed countries mandating the screening of
donated blood and plasma for the presence of HCV RNA, whilst in the field of biotherapeutic
medicines (8) European Pharmacopeia guidelines dictate that constituent plasma pools must be
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screened for the presence of HCV RNA and that all assays used for such a purpose must have a
sensitivity of at least 100 IU/mL (9).
Furthermore, with no therapeutic or prophylactic vaccine available there is a global need to use
HCV NAT assays for the diagnosis of patients and the monitoring of those receiving antiviral
therapy (8). In both cases accurate and comparable quantification is required across all HCV
NAT systems.
The 4th
WHO HCV NAT IS (NIBSC code 06/102) was established in 2011 (5); however the
product was established with the knowledge that the material was not able to maintain titre when
shipped to customers at ambient temperature, a practice commonly employed for lyophilised
standards to reduce the shipping costs for the customer. The material did however demonstrate
good stability when shipped on dry ice. The 4th
HCV IS was established with the understanding
that further stability investigation would be carried out and a 5th
standard developed in advance
of the usual time frame of depleted stocks of the previous standard.
A difference in stability has been previously reported (5) between the 1st (99/790) and 2
nd
(99/798) established preparations of the HCV NAT IS and the 3rd
(06/100) and 4th
(06/102)
preparations. The most notable difference between these is the presence of HCV antibody in
preparations 1 and 2 but its absence in preparations 3 and 4. A pilot study was conducted to
determine whether the presence or absence of HCV antibody affected the stability of the product.
This report describes both the pilot study conducted to investigate the stability issues observed in
the previous standard and following the outcome of this study the development and evaluation of
the replacement batch of standard to be established as the 5th
WHO International Standard for
HCV RNA for NAT.
Data from the pilot study were presented at the XXIV Scientific Working Group on the
Standardisation of Genome Amplification Techniques for the Safety Testing of Blood and
Clinical Diagnostics meeting in Graz, Austria in May 2014. The collaborative study to establish
the 5th
HCV NAT IS was presented to the 20th
Anniversary meeting of the Scientific Working
Group on the Standardisation of Genome Amplification Techniques for the Safety Testing of
Blood and clinical diagnostics meeting held on 25/26th
June in London, UK.
In line with previous standards, an international unit derived as the result of a comprehensive
collaborative study incorporating a range of different assays will be assigned to this material. As
with the majority of biological preparations, the material cannot be fully characterized by a
physico-chemical reference method. Therefore, biological assays will be used, these methods are
heterogeneous and the lack of a reference method does not permit the results to be expressed in
absolute values according to the SI system.
Pilot study to investigate stability of freeze-dried HCV formulations
Background
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WHO HCV NAT IS stability discrepancies have previously been reported (5). Briefly the 1st
(99/790) and 2nd
(99/798) established preparations of the HCV NAT IS displayed good stability
throughout their use, whereas a loss of titre over time was observed in the 3rd
(06/100) and 4th
(06/102) IS preparations. The 1st and 2
nd standards were prepared from identical stock material
and lyophilised on two separate occasions. The stock material used to formulate the 3rd
and 4th
standard was different from that used for the 1st and 2
nd standard, however similarly both 3
rd and
4th
standards were produced from the same stock material and lyophilised on two separate
occasions. The main notable difference between the preparations was the presence of HCV
antibody in preparations 1 and 2 but its absence in preparations 3 and 4. High moisture and
oxygen was observed in all preparations.
A pilot study was conducted to determine whether excessive moisture in conjunction with the
presence or absence of HCV antibody affected the stability of lyophilised HCV RNA. The pilot
study was performed between January 2014 and May 2014. Six different HCV RNA candidate
formulations were evaluated for stability through accelerated thermal degradation studies and
subsequently assessed by laboratories using different commercial assays.
Source candidate material The study compared six different HCV RNA preparations comprising of two main groups.
1) HCV window period positive donation, diluted in negative human plasma. 2) Pooled antibody
positive plasma donations.
Six individual HCV RNA positive plasma packs were purchased from the UK NHS Blood and
Transplant Authority. Each pack had previously been screened using the UK blood donation
screening algorithm and rejected due to a positive HCV NAT signal.
Titre determination was carried out at NIBSC using the COBAS® AmpliPrep/COBAS®
TaqMan® HCV v2.0 assay. Three plasma packs, containing a titre that when pooled, would
result in a final concentration of approximately 6 log10 IU/mL of HCV RNA, were selected. The
final volume available for the study, following pooling, was 320mL. This material was used to
formulate the HCV antibody positive preparations.
800mL of HCV RNA positive, HCV antibody negative (window period) plasma was donated by
Public Health England, UK. This was confirmed to be antibody negative at NIBSC using the
Murex EIA and was confirmed to have a titre of 6 log10 IU/mL using the COBAS®
AmpliPrep/COBAS® TaqMan® HCV v2.0 assay.
Table 1 outlines each candidate formulation.
Formulation of candidate pilot study material
Antibody negative material
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A 1/10 dilution into HCV RNA negative, HCV antibody negative plasma was performed on the
window period donation to give a titre in the region of 5 log10 IU/mL.
3x 80mL of material was aliquoted into 120mL sterile bottles and labelled 2, 4 and 6.
Antibody positive material In order to achieve a titre of 1x10
5 IU/mL as the final titre of the antibody positive material, six
HCV positive plasma packs were tested using the Roche COBAS® AmpliPrep/COBAS®
TaqMan® HCV v2.0 assay Two HCV antibody positive plasma packs were selected or intial
pooling to give a concentration of 1.44x103 IU/mL, the flask was labelled pool 6. Pool 6 was
then combined with a single HCV antibody positive donation, with atitre of 8.93x105 IU/mL.
100mLs of Anti HCV positive plasma at a concentration of 1x106 IU/mL was produced and
comprised the HCV antibody positive preparation for this pilot study.
3x 80mL of the pooled HCV antibody positive plasma was aliquoted into 120mL sterile bottles
and labelled 1, 3 and 5.
To assess any stabilising effect during lyophilisation, preparations were made with the presence
or absence of Hepes buffer and trehalose.
Hepes buffer, at a final concentration of 40mmol/L, was added to bottles 3 and 4. Trehalose, at a
final concentration of 10mg/L, was added to bottles 5 and 6. The remaining bottles, 1 and 2,
served as unstabilsed control material for each AB+ and AB- preparation. All preparations were
mixed for 10 minutes thoroughly to ensure homogeneity.
38 x 0.55mL of each preparation was aliquoted in to 2mL sarstedt vials and frozen at -700C to
provide aliquid frozen baseline sample.
Lyophilisation of pilot study candidates Lyophilisation was conducted by Public Health England, Colindale, UK. All preparations were
lyophilised in the same run using a three day plasma cycle. Preparations were then returned to
NIBSC on dry ice.
Accelerated degradation of samples Prior to placing samples at different temperatures, half of each batch of preparation was exposed
to atmospheric conditions to deliberately allow the introduction of moisture and oxygen. The
vials were placed in a microbiological safety cabinet; stoppers were lifted but not fully removed
and the vials left for 60 minutes. After which time all stoppers were closed fully and the screw
cap lids replaced.
In total 25 samples from each of the six lyophilised preparations were placed at -200C and
+200C. At the one month time point samples were removed, 3 vials of each temperature were
assayed by participants in a small collaborative study. Vials of the current 4th
HCV NAT IS were
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evaluated in parallel. 56 vials of 06/102 were placed at +200C for one month. The labelling of
tubes is summarised in table 1.
Statistical analysis
Pilot collaborative study Six laboratories, each using a different, commercially available HCV RNA assay were invited to
participate in a small collaborative study to assess the lyophilised preparations from each
temperature. Frozen liquid bulk material corresponding to each formulation was also included.
Study participants and assays used can be found in appendices 1 and 2.
Participants were sent up to a total of 28 lyophilised preparations and 6 frozen liquid
preparations (Vial numbers varied depending on the volume requirement of the participants
chosen assay). Each participant was requested to perform two independent assays, using a fresh
vial of material each time. For quantitative assays participants were requested to test all vials
neat. For qualitative assays, it was recommended that laboratories tested each sample neat and at
up to four 10-fold dilutions in the first assay to establish the end point and at half log dilutions
around the end point in subsequent assays. A copy of the study protocol is provided in
appendices 3-6.
Results – Pilot study
The mean of all data received from all participants for the analysis of the pilot study samples A-
G are presented in table 2
Observed differences in titre between liquid bulk samples and lyophilised preparations are also
shown. The mean loss in titre due to the lyophilisation of material of the antibody positive
preparations is 0.53 log10 IU/mL whilst for antibody negative preparations it is 0.22 log10 IU/mL.
The mean differences between the presence or absence of moisture or antibodies ranges from
+0.07 to -0.14 log10 IU/mL, this difference is considered within the limits of precision of the
assays used.
Statistical analysis
Statistical analysis using the Arrhenius equation, frequently used to predict loss of titre following
long term storage at -20 through the short term loss at higher temperatures, was not possible due
to the negligible difference in titre between each sample types.
Discussion – Pilot Study
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All panel members used in this study were formulated to contain approximately 1x 105, however
some loss was experienced during lyophilisation giving a range of titres from 4.89 log10 IU/mL
to 5.13 log10 IU/mL. All panel members were compared relative to their -200C counterpart.
Data from the pilot study indicated no loss of titre of HCV RNA across all temperatures and
formulations used. Given the time period available, a timeframe of one month was chosen to
store pilot formulations at -200C and +20
0C. In previous HCV IS formulations a reduction in titre
was observed at temperatures up to 200C over a few days during shipping. By storing samples
for one month it was felt that this would go over and beyond previous scenarios where by a loss
in titre was observed during the shipping process.
In previous HCV IS stability studies it has been demonstrated that there has been a loss in titre
during routine transport at ambient temperature. In this study a temperature of +200C represents
an average ambient shipping temperature, to hold a sample at this temperature for a period of one
month exceeds a usual shipping timeframe and therefore it was expected that if a loss is titre was
to be observed, such a time frame would be suitable to witness this. However as no loss was seen
in any sample, it can be concluded that the presence or absence of HCV antibodies did not
influence the stability of HCV RNA in lyophilised preparations. Indeed the addition of
stabilising compounds also displayed no effect.
Due to the availability of sufficient window period donation at NIBSC it was proposed that the
5th
HCV RNA IS would be formulated from this donation in order to avoid delays in sourcing
sufficient qualities of antibody positive plasma. Delegates of the SoGAT workshop held in Graz,
Austria in May 2014 agreed an antibody negative HCV RNA plasma preparation would be fit for
purpose and development of such a standard should continue in a timely manner.
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Establishment of a 5th International Standard for HCV RNA for
use in NAT - Main collaborative study
Introduction
Following a pilot study (described above) to investigate the stability of lyophilised HCV RNA, it
was agreed at the 3rd
combined Blood Virology and Clinical Diagnostic SoGAT workshop, held
in Graz, Austria (30/31st May 2014) that the 5th
HCV RNA IS for NAT should be formulated
from a window period donation and comprise HCV antibody negative material spiked into
human plasma. It was also agreed that in a change to previous batches of HCV IS, the 5th batch
would be formulated in 1.1mL aliquots to allow for undiluted use on current automated analysers
that require a 1mL input volume.
Material and Methods
Candidate standard The proposed candidate standard comprises (NIBSC code 14/150) a single window period
donation, confirmed by Sanger sequencing to be HCV genotype 1a (sample and sequence
information provided by Public Health England, Colindale UK) spiked into human plasma tested
and found negative for HCV, and HIV-1/2 antibodies, HBsAg and HAV.
Negative human plasma sourced from the National Blood Service, UK (NBS) in the form of
individual plasma packs comprised the diluent for this standard. 12 packs were pooled and
refrozen until required. Each plasma pack was previously screened by the NBS and found
negative for HIV antibodies, HCV RNA, HBsAg and Syphilis. Once pooled the diluent was
further tested at NIBSC and confirmed negative for HIV-1/2 antibodies, HBsAg and HCV RNA.
Preparation of bulk material 300mL of window period material was stored at -70
0C until required. Previous titre
determination using the COBAS® AmpliPrep/COBAS® TaqMan® HCV v2.0 assay, confirmed
the bulk stock material to be 6 log10 IU /mL.
Bulk stock material was thawed in a water bath at 370C, with occasional mixing to encourage
even heat distribution and increase the thawing process. Following thawing the stock was mixed
using a magnetic stirrer and flea for 30 minutes to disperse any aggregates and ensure
homogeneity. Stirring also aided the breakdown of residual lipid clots.
The bulk stock was diluted in human plasma sourced from the UK Blood Transfusion and
Transplant service, all plasma donations were screened and found negative for anti-HIV-1,
HBsAg, and HCV RNA.
280mL of bulk stock was diluted into 2220mL of negative plasma. 2500mL of final preparation
was formulated to contain approximately 1x105 HCV log10 IU/mL. The final formulation was
stirred continuously for 30mins using a magnetic stirrer and flea.
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200mL of liquid bulk stock was dispensed in 1.1mL aliquots into 2mL Sarstedt vials and frozen
at -700C. The remaining bulk preparation was transferred to the Centre for Biological Reference
Materials, located at NIBSC for filling and lyophilisation. The final product was coded, NIBSC
code 14/150.
Filling and lyophilisation of the candidate standard Filling and lyophilisation was performed onsite at NIBSC by the Centre for Biological Reference
Materials (CBRM), Potters Bar, UK in September 2014. The filling was performed in a Metal
and Plastic GmbH (Radolfzell, Germany) negative pressure isolator that contains the entire
filling line and is interfaced with the freeze dryer (CS150 12m2, Serail, Arguenteil, France)
through a ‘pizza door’ arrangement to maintain integrity of the operation.
The bulk material was dispensed in 1.1mL volumes into 5mL screw cap glass vials using a
Bausch & Strobel (Ilfshofen, Germany) filling machine FVF5060. The bulk material stirred
constantly using a magnetic stirrer. The homogeneity of the fill was determined by on-line
check-weighing of the wet weight, a tolerance of 1.093 to 1.108g with a target of 1.100g was
applied; a sample of 3% was check weighed to determine the homogeneity of the fill. Those
outside of this tolerance were discarded.
Filled vials were partially stoppered with halobutyl 14mm diameter cruciform closures and
lyophilized in a CS150 freeze dryer. Vials were loaded onto the shelves at -50°C and held at this
temperature for 4 hrs. A vacuum was applied to 270 ub over 1 hr, followed by ramping to 30 ub
over 1 hr. The temperature was then raised to -40°C, and the vacuum maintained at this
temperature for 42.5 hrs. The shelves were ramped to 25°C over 15 hrs before releasing the
vacuum and back-filling the vials with nitrogen. The vials were then stoppered in the dryer,
removed and capped in the isolator, and the isolator decontaminated with formaldehyde before
removal of the product.
A total of 1980 vials were filled; these vials were then stored at -200C. Continuous temperature
monitoring will proceed for the lifespan of the product. Material characteristics can be found in
table 2.
Post-fill testing Assessments of residual moisture and oxygen content, as an indicator of vial integrity after
sealing, were determined for twelve vials of the freeze-dried product. Residual moisture was
determined by non-invasive near-infrared (NIR) spectroscopy (MCT 600P, Process Sensors,
Corby, UK). NIR results were then correlated to Karl Fischer (using calibration samples of the
same excipient, measured using both NIR and Karl Fischer methods) to give % w/w moisture
readings. Oxygen content was measured using a Lighthouse Infra-Red Analyzer (FMS-750,
Lighthouse Instruments, Charlottesville, USA). The CV of fill mass and mean residual moisture
and Oxygen were within WHO acceptable limits; details can be found in table 3.
Stability of the freeze-dried candidate Accelerated degradation studies are currently on going at NIBSC, where the stability of this
material can be predicted when stored at -200C. Vials of the freeze-dried product were stored at -
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700C, -20
0C, +4
0C, +20
0C, +37
0C and +45
0C in November 2014 and have been tested at 3 and 6
months. At the three month time point two vials were removed from each temperature,
reconstituted and pooled prior to extraction and amplification. At the 6 month time point, three
vials were removed from each temperature, reconstituted and tested individually. At both time
points the HCV RNA concentration was quantified by NAT using the COBAS®
AmpliPrep/COBAS® TaqMan® HCV v2.0.
Study samples The lyophilised candidate material 14/150 was evaluated in parallel to the 2
nd and 4
th WHO
International Standard for HCV for Nucleic Acid Techniques (NIBSC codes 96/798 and 06/102
respectively). Alongside these materials, 3 liquid preparations were provided in this study; a
sample of the candidate liquid bulk material, a HCV antibody positive commutability sample
comprising a single donation HCV antibody positive sample purchased from the UK National
Blood Authority and a candidate working reagent for HCV (14/152-001), consisting of a clinical
samples spiked into HCV negative human plasma. Before shipping, liquid preparations were
stored at -700C, whereas freeze-dried materials were stored at -20
0C.
Collaborative study (NIBSC code CS534) samples were shipped to all participants frozen (on
dry ice). Samples were blinded and coded 1-6 as shown below:
Sample 1 – Candidate HCV International standard liquid bulk material in a 2mL Sarstedt
tube
Sample 2 – HCV antibody positive commutability liquid material in a 2mL Sarstedt tube
Sample 3 – Lyophilized preparation 96/798 in a 3mL crimp cap vial
Sample 4 – Lyophilized preparation 06/102 in a 3 mL crimp cap vial
Sample 5 – Lyophilized preparation 14/150 in a 5mL screw cap vial
Sample 6 – HCV candidate working reagent 14/152-001 in a 2mL Sarstedt tube
Study Design The aim of this collaborative study was to establish a replacement material for the 4th WHO
International Standard for HCV RNA (NIBSC code 06/102) and assign a unitage based on
comparisons to both 2nd and 4th WHO HCV International Standards. This study also includes a
Working Reagent candidate material, which will be calibrated against these preparations in a
range of NAT-based assays. Up to 10 vials of samples 1-6 were sent to participants on dry ice.
Vial numbers varied depending on the volume requirement of the participants chosen assay.
Participants Study samples were sent to 17 participants across 11 countries (Appendix 7). Participants were
selected for their experience in previous collaborative (HCV NAT) studies and their
representative distribution geographically; providing a range of assays across the testing field
(assays used are shown in appendix 8). These included manufacturers of in vitro diagnostic
devices (IVD’s), control and reference laboratories and blood transfusion centres. Laboratories
were designated a number code at random and where a specific laboratory performed more than
one assay their data was analysed separately. These labs were given a decimal number code, for
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example Laboratory 17.1, 17.2 etc. Appendix 7 does not represent the order of designated
laboratory numbers.
Study protocol Participants were requested to test samples 1-6 in their routine HCV NAT-based assays; in three
independent tests. Each participant was given sufficient material for their assay, which had
previously been established through the participant invitation. Where assays required a higher
volume than that of a specific sample, participants were instructed to combine vials and start
their dilutions (outlined below) from the combined material (further details can be found in the
study protocol, appendices 9-10). Samples 3 and 4 were to be reconstituted in 0.5 mL of
deionized, nuclease-free molecular grade water and sample 5 in 1.1 mL. All lyophilized
preparations were left for at least 20 minutes with occasional agitation before use.
Participants were requested to dilute samples in human plasma and extract each dilution before
amplification.
For quantitative assays: Participants were requested to test samples 1, 2 and 6 undiluted only. Sample concentrations of
each sample were reported in IU/mL. For samples 3 – 5, it was suggested that participants
perform a minimum of two serial ten-fold dilutions within the linear range of their assay (e.g. 10-
1 and 10-2).
For qualitative assays Participants were requested to test the dilution at the predicted assay end-point (limit of
detection), with a minimum of two half-log serial dilutions either side of the end-point (i.e. at
least five dilutions in total). Within subsequent assays participants were asked to work around
this end point more precisely. Results were reported as either negative or positive.
In both case all results were returned to NIBSC for analysis with details of methodology used.
Statistical methods Qualitative and quantitative assay results were evaluated separately.
In the case of qualitative assays, for each laboratory and assay method, data from all assays were
pooled to give a number positive out of number tested at each dilution step. A single ‘end-point’
for each dilution series was calculated, to yield an estimate of ‘NAT detectable units/mL. It
should be noted that these estimates are not necessarily directly equivalent to a genuine genome
equivalent number/mL (9). This model assumes that the
probability of a positive result at a given dilution follows a Poisson distribution (with mean given
by the expected number of “copies” in the sample tested), and that a single “copy” will lead to a
positive result. Calculations were performed using the statistical package GLIM (10). When asingle
value is obtained for each laboratory and sample no assessment of within laboratory, i.e
between assay variability can be made.
In the case of quantitative assays, analysis was based on the results supplied by the participants,
reported as IU/mL. For each assay run, a single estimate of log10 IU/mL was obtained for each
sample, by taking the mean of the log10 estimates of IU/mL across replicates, after correcting for
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any dilution factor. A single estimate for the laboratory and assay method was then calculated as
the mean of the log10 estimates of IU/mL across assay runs.
Overall analysis was based on the log10 estimates of IU/mL or ‘NAT detectable units/mL’.
Overall mean estimates were calculated as the means of all individual laboratories. Variation
between laboratories (inter-laboratory) was expressed as standard deviations (SD) of the log10
estimates and % geometric coefficient of variation (%GCV) of the actual estimates. Variation
within laboratories and between assays (intra-laboratory) was expressed as standard deviations of
the log10 estimates and %GCVs of the individual assay mean estimates.
Potencies of sample 5, the candidate International Standard relative to the two previous
International Standards were calculated as the difference in estimated log10 IU/mL (candidate
standard-previous standard) plus the value in International Units/mL (IU/mL) of the previous
standard.
Results
Of the 18 laboratories that were sent samples, 17 laboratories returned data, with two laboratories
returning data from two different assays giving a total of 19 data sets for analysis. The data
returned comprised 12 (63%) quantitative and 7 (37%) qualitative sets. All qualitative data was
produced by assays from a commercial supplier, with the most frequently used assay being the
Roche MPX, two different platforms were represented; MPX Ampliprep and MPX 8800, such
data constituted 86% of qualitative data. The remaining 14% was performed using the Procleix
Ultrio system. All main commercial assays were represented in the quantitative data sets, 4
laboratories used the Roche CAP/CTM v2.0, 2 laboratories reported data from the Roche 6800
platform, single laboratories reported data using the versant kPCR HCV RNA assay, Abbott
RealTime and QIAGEN QiaSymphony. One laboratory reported quantitative data using two
different in house methods. Tables 5 and 6 show the mean laboratory estimates for quantitative
and qualitative assays respectively. Blank spaces in the tables indicate no data was returned for
that sample.
The loss of titre arising from lyophilisation was assessed by participant, mean values for S1
(liquid bulk) with S5 (candidate 14/150). When combining mean values of both quantitative and
qualitative assays for these samples a loss of 0.11 log10 IU/mL is observed. This is similar to that
seen across all assays in the pilot study with the same material. However, taking quantitative and
qualitative data sets individually a loss of +0.09 log10 IU/mL vs -0.44 NAT detectable units are
observed, as demonstrated in table 7.
Inter-laboratory variation for both quantitative and qualitative data is presented in table 7.
Variation is greater amongst qualitative data than quantitative in 4/6 candidates evaluated
demonstrated by higher GCV values. Overall the combined standard deviation values across all
samples were <0.50 log10 IU/mL. Intra-laboratory standard deviations for each quantitative
laboratory data set are presented in table 8, values are very low for each sample indicating
excellent precision.
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Histogram representation of laboratory mean estimates for each sample are shown in figures 1-
6.shaded squares represent qualitative assays and clear squares quantitative assays. Value
agreement is seen across all samples tested with data from qualitative assays flanking the main
consensus group comprising of quantitative assays.
Figure 7 shows the relative potencies for the candidate standard (S5) relative to the previous 2nd
HCV IS (S4), which has previously been assigned a value of 5.00 Log10 IU/ml . In general for
both quantitative and qualitative assays excellent agreement was observed at approximately 5
log10 IU/mL. One outlying data set, (laboratory 15) representing data from the qualitative MPX
assay, gave a value of 3.41 log10 IU/mL. Figure 8 represents quantitative data only; a variation in
potency of only 0.5 log is seen from the mean.
Figure 8 shows the estimated relative potency for the candidate sample (S5) relative to the
current 4th
HCV IS (S4). Harmonisation is seen in all quantitative assays. However outliers are
seen in three separate qualitative assays: the MPX on the 8800 platform, Procleix Ultrio assay
and the MPX on the S201 platform. A reduction in relative potency of -2.05, -1.65 and -1.60
log10 from the mean was observed respectively.
Table 10 shows relative potency estimates for the candidate sample (S5) relative to both the 2nd
and 4th
HCV IS. Mean potencies for qualitative, quantitative and combined data, plus 95%
confidence intervals based on the mean are displayed. Standard deviations for both the
qualitative data sets are higher than quantitative. Results for the candidate standard are
marginally higher across both data sets relative to the 4th
IS than the 2nd
with a difference of 0.59
and 0.44 respectively. A -0.2 log difference is apparent between the 4th
IS and the 2nd
IS
qualitative data sets and potency is also reduced, although to a lesser degree, in the quantitative
data (0.11 log), although these differences are not statistically significant.
Accelerated degradation studies Table 4 shows titres of the candidate standard at following 3 and 6 months storage at elevated
temperatures. Differences between titres compared with the -200C sample at each time point are
shown in parentheses. Changes in titre of up to 0.07 log10 IU/mL were observed in temperatures
up to +200C at the three month time point and titres at the 6 month time point are indicating a
0.14 log10 IU/mL loss at +200C, but all are within the variability of the assays, as presented in
table 4.
Discussion In this study, a range of NAT-based assays for HCV have been used to evaluate the stability and
suitability of the candidate standard as the replacement 5th WHO International Standard for
HCV for NAT-based assays.
A WHO IS for HCV NAT has been available since 1996. During this time, 4 replacement
batches have been established; two comprising antibody positive material and two comprising
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antibody negative, the rationale for the different formulations has circulated around the primary
end user. Initially, due to the availability of material, the 1st and 2
nd standards were developed
with antibody positive sourced plasma from the UK Blood Transfusion Service. The sourcing of
sufficient material for the formulation of a standard can be problematic, with either a small
volume of high titre material needed for spiking or a large volume, <2000mL, that can be
aliquoted and lyophilised directly with no need for a dilution to be made. Following the
development of the first two standards it was identified that the main use of the standard was to
calibrate assays used by the blood donation field, in this case the detection of a positive HCV
NAT sample would be likely to be a window period donation, thus it was subsequently decide to
produce the 3rd
replacement HCV IS using antibody negative material.
The 3rd
and 4th
HCV IS preparations were formulated from at the same time from the same bulk
stock material, they were evaluated in the same collaborative study, suitable performance was
demonstrated by both candidates and thus the 4th
followed on when the 3rd
became depleted. As
assay sensitivity improved a loss in titre in the region of 0.2log10 IU/mL in the 4th
IS became
detectable. A look back study across all HCV IS’s also identified stability issues with the 3rd
preparation, however this was not mirrored in the ‘older’ 1st and 2
nd standard preparations. The
main difference between these preparations was the presence of HCV antibody in standards 1
and 2 and its absence in 3 and 4, ie standards 3 and 4 were formulated from a window period
donation.
It was therefore hypothesised that the presence of HCV antibody created a stabilising effect on
the virus during the lyophilisation process, perhaps by the formation of complexes that protects
the fragile RNA.
Prior to the formulation and study to establish the 5th
standard, a pilot study was performed,
however as demonstrated in this report, with the formulations and protocols used for the study no
loss in titre was observed. The question over antibody positive or negative formulations was
revisited; the rationale for an antibody negative material suiting blood donation centres detecting
window period donations still applies. However it is also recognised that assays would also be
used for patient diagnosis and treatment management, in which case the clinical sample would
most likely be antibody positive. Having established that the presence or absence of stability did
not affect the lyophilised stability of the end product it was agreed to formulate the replacement
5th HCV NAT IS with window period donation. Sufficient volume was available at NIBSC and
its use would enable a timely production of material to ensure continuity of supply.
The candidate was therefore prepared from a new bulk material that had been evaluated for
stability in a pilot study previously described in this report. In line with previous WHO HCV
NAT standards, the selected candidate material was genotype 1a, a circulating strain that still
predominates in the developed world. The selection of genotype was approved at the 3rd
joint
workshop of Blood Virology and Clinical Diagnostics held in Graz, Austria on 30/31st May
2014. It was accepted that whilst a variety of genotypes are in circulation material, the
availability of a WHO International Reference panel for HCV NAT is available for the
optimisation of assays against different genotypes and continuity between WHO HCV NAT
international standards would be prudent.
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Data generated during the pilot study indicated a 0.2 log drop was to be expected during the
lyophilisation of the HCV positive antibody negative material. Appropriate calculations were
made for the production of the final material to adjust for this loss to give a final candidate at 5
log10 IU/mL, as can be seen in table 1, the combined difference for difference between frozen
liquid bulk (S1) and the lyophilised standard (S5) is 0.17 log, however if the data for quantitative
and qualitative data sets is analysed independently there is a larger decrease in titre observed
with qualitative assays (0.43 log10) than quantitative (0.09 log10). The reason for this is unknown,
qualitative assays used in this study utilise similar extraction and amplification mechanisms
compared with those used in quantitative systems so this phenomenon is unlikely to be
attributable to the mechanisms and perhaps more due to analysis methods associated with end
point dilutions.
In this study both the 2nd
and 4th
(current) HCV IS were included for possible relative potency
assignment. Historically it is common practice to assign potency to a replacement standard based
on the immediate previous standard. Theoretically for true continuity of the IU from one
standard to another a direct comparison should always be made back to the 1st IS. However, in
practice, this is not always possible due to limited availability of material. It has discussed
previously in this report that stability issues had been identified with the current 4th
IS. Whilst
these appear to be limited to degradation only at temperatures above -200C it was decided to
include a previous standard to give an alternative reference for relative potency assignment
should the 4th
IS underperform for any reason in this study. Unfortunately there was insufficient
material available to include samples from the 1st HCV IS, however the 1
st and 2
nd standards
were produced from the same bulk material at the same dilution concentration, they were both
assigned a unit of 5 log10 IU/mL in the initial study; the only difference between them being that
the lyophilisation was performed on two different days. Both 1st and 2
nd standard have remained
stable at -200C since their production 19 years ago. Thus it was appropriate to include the stable
2nd
standard in addition to the current 4th
.
Table 4 demonstrates the accelerated degradation stability testing performed to date. Such data
has subsequently been discussed that the 20th
Anniversary SoGAT workshop, previously
referenced, and a WHO collaborating centres meeting held at NIBSC on 2-3rd
July 2015. At both
meetings it was agreed that the data is inconclusive and additional stability testing should be
performed prior to establishment. The six month time point will be repeated and addition 9
month time point performed in advance of the WHO ECBS meeting. In both assays the thermal
degradation samples will be tested alongside the current IS for direct potency calibration instead
of using the assays calibration. Indications at 3months storage at +200C suggest that the material
would remain stable during normal transportation timeframes, this will be confirmed by
simulated transport analysis .
Figures 7-10 and table 10 focus on the relative potency comparisons of both standards to the
proposed 5th
. It can be seen in figure 7 (combined quantitative and qualitative data) that when
comparing the relative potency of S5 relative to S3 (2nd
IS) there is a single outlying data point
from a laboratory using the Roche MPX assay performed on the S201 platform (lab 15). A
second laboratory also provided data for this study using the same platform (lab 9) and it can
been seen that these results are within the main consensus grouping, suggesting that the reduced
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relative potency is a factor of the way the assay has been performed on this occasion and not the
initial assay calibration.
Similarly, when observing data in figure 9, relative potency of S5 compared to S4 (current 4th
IS), qualitative outliers are observed. In addition to the example above, the Procleix Ultrio assay
(lab 10) and Roche MPX performed on the 8800 platform also reports lower potencies than
would be expected. A comparison can be made for the Procleix Ultrio assays with a second
laboratory also using this assay (lab 7), it can be seen that the data set falls within the main
consensus group, therefore as above this is not considered an artefact of the assay system. It is
however harder to draw a conclusion for the final outlier (lab 8) as no other laboratories have
performed this assay in this study.
Given the above comparisons and the potency data presented in table 10, it is apparent that a unit
could be assigned to S5 based on either the 2nd
or 4th
standard. However with the consideration
of stability issues previously identified with the 4th
standard and the ideal scenario, that relative
potencies should be compared directly with the 1st IS, it would seem appropriate to assign the
relative potency of S5 compared with S3 (2nd
IS). S3 has demonstrated good stability and is
identical in formulation and unit assignment to the 1st IS. Furthermore the HCV RNA IS will be
used by users of both qualitative and quantitative assays; it is therefore recommended that at
potency should be derived from the combined data of both data sets.
In a change to previous HCV NAT IS’s, this 5th
replacement has been formulated to be
reconstituted in a final volume of 1.1mL. Previous standards have been reconstituted in a 0.5mL
volume, from the advent of IS development in the blood field 0.5mL provided sufficient volume
for a 1 vial to be required. Current assays now require up to 1mL sample volume, thus with
previous 0.5mL volumes customers were ordering at least two vials to run one assay and stocks
were becoming depleted too quickly. This change will be clearly stated in the information for use
sheet that accompanies each shipment of material. In addition a notification email will also be
sent to all customers who have received the 4th
standard within the last year, notifying them of
the volume change and of the availability of the new standard.
The batch of candidate 5th
HCV IS comprises 1980 vial. With an anticipated dispatch rate of 250
vials/annum; this stock represents a supply that should have is a little over 7.5 years supply.
Whilst it may seem prudent to make a much larger batch, as highlighted above with a biological
preparation such as this, it is always a challenge sourcing a sufficient volume and titre of stock
material. In these situations one way of ensuring the provision of the same batch of material for
an extended period of time is to provide end users with well calibrated secondary reference
materials. Within this study, sample 6 was evaluated for this purpose.
In conclusion a relative potency assigned compared to the 2nd
HCV IS would equal S5 being
assigned a unit of 5.0 log10 IU/mL when reconstituted in 1.1ml.
If it was decided that a potency should be assigned based on the comparison to the current 4th
IS,
then S5 would be assigned a unit of 4.90 log10 IU/ mL when reconstituted in 1.1ml
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Conclusion
Based on the results of this collaborative study, S5 observed in this report (NIBSC code 14/150)
demonstrates continued harmonisation from the availability of a standard for HCV RNA. The
HCV antibody negative formulation used for this candidate performs equally in all assays used.
Further investigation of stability needs to be carried out and data will be available for discussion
at the 2015 WHO ECBS meeting with a recommendation as to how this material should be sent
to participants, supplementary analysis will be submitted to the committee no later than one
month before the meeting.
This standard will continue to be used by IVD manufacturers, blood transfusion centres, control
authorities, and clinical laboratories using both quantitative and qualitative assays, to calibrate
secondary reference materials and in the validation of HCV NAT assays. It is therefore
appropriate to derive a relative potency value from a combined data set comprising quantitative
and qualitative data.
A potency should be assigned against the 2nd
HCV RNA IS (S3), this would determine that when
properly reconstituted, the preparation contains of 5.0 log10 IU/ml
Proposal
It is proposed that a value of 5.0 log10 IU/mL is assigned to the 5th International Standard for
HCV RNA for use in NAT (NIBSC code 14/150).
Comments from Participants
This report was circulated to all participants for comment. Six participants returned a variety of
comments. One laboratory resubmitted data having discovered a calculation error in their data
previously submitted, this required some reanalysis by our statistical department. Three
laboratories retuned minor typographical corrections and clarification of correct table references
in the text. One laboratory asked for the intended unit assignment per mL to be clarified in the
final proposal as the per/vial and per/mL unit was confusing.
Finally one laboratory suggested the qualitative data should not be included in the final relative
potency assignment due to the variability that was observed in these data sets. Whilst this
standard is intended for use in both quantitative and qualitative assays it is agreed that calibration
of a unit assignment in IU/ml will impact largely on the quantitative assays, therefore, in
conjunction with the statistical group at NIBSC the decision has been made to make a unit
proposal based on quantitative data only. It was also suggested that further statistical methods
should be included for some of the data sets, this comment was address by the statistical group at
NIBSC, in this instance further references have been included.
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Acknowledgements
We gratefully acknowledge the important contributions of the collaborative study participants
and the organisations donating material for use in this study
References
1. Saldanha J, Lelie PN and Heath AB. Report on the evaluation of a candidate standard for
GAT assays for HCV RNA. WHO ECBS Report 1997;WHO/BS/97.1861.
2. Saldanha J, Lelie N and Heath AB. Establishment of the First International Standard for
Nucleic Acid Amplification Technology (NAT) assays for HCV RNA. 1999. Vox Sang.
76:149-158.
3. Saldanha J, Heath A, Aberham C, Albrecht J, Gentili G, Gessner M, and Pisani G. WHO
collaborative study to establish a replacement WHO international standard for HCV RNA
NAT. WHO ECBS Report 2003;WHO/BS/03.1958.
4. Saldanha J, Heath A, Aberham C, Albrecht J, Gentili G, Gessner M, Pisani G. World Health
Organization collaborative study to establish a replacement WHO international standard for
hepatitis C virus RNA nucleic acid amplification technology assays. Vox Sang.
2005;88:202-4.
5. Fryer J, Heath AB, Wilkinson DE, Minor PD, Collaborative Study Group. Collaborative
Study to Evaluate the Proposed 4th WHO International Standard for Hepatitis C Virus
(HCV) for Nucleic Acid Amplification Technology (NAT)-Based Assays. WHO ECBS
Report 2011;WHO/BS/2011.2173.
6. Baylis SA, Heath AB and the Collaborative Study Group. WHO collaborative study to
establish a replacement WHO International Standard for Hepatitis C virus RNA nucleic acid
amplification technology (NAT)-based assays. WHO ECBS Report 2007;WHO/BS/07.2055.
7. Baylis SA, Heath AB; Collaborative Study Group. World Health Organization collaborative
study to calibrate the 3rd International Standard for Hepatitis C virus RNA nucleic acid
amplification technology (NAT)-based assays. Vox Sang. 2011;100:409-17.
8. Guidance for Industry Nucleic Acid Testing (NAT) for Human Immunodeficiency Virus
Type 1 (HIV-1) and Hepatitis C Virus (HCV): Testing, Product Disposition, and Donor
Deferral and Reentry. U.S. Department of Health and Human Services Food and Drug
Administration Center for Biologics Evaluation and Research May 2010.
9. Monograph on ‘human plasma for fractionation.’ European Pharmacopoeia. 07/2008:0853. 10. Collet, D., 1991. Modelling Binary Data, Chapman Hall, London.
11. Francis, B., Green, M., Payne, C. (Eds), 1993. The GLIM System Release 4 Manual.
Oxford Science Publications, Clarendon Press, Oxford.
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Table 1: Formulation of pilot study samples
Study
Sample Code A B C D E F
G
HCV
antibody
status
+ - + - + -
4th HCV
NAT IS
Stabilizer
included - -
Hepes
40mmol/L
Hepes
40mmol/L
Trehalose
10mg/L
Trehalose
10mg/L
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Table 2: Combined pilot study data
Sample Liquid
Bulk
Freeze Dried
Samples
Loss
in FD
(log10)
-20 -M
and -20
+M
-20 -M
and
+20
+M
-20 -
M and
+20 -
M
Moisture (+M)
No Moisture (-
M)
+20
0C -20
0C +20
0C -20
0C
1 (Anti
Pos)
5.12
(0.05)
4.50
(0.11)
4.56
(0.10)
4.54
(0.09)
4.49
(0.11) -0.63 -0.07 -0.01 -0.05
2 (Anti
Neg)
4.93
(0.04)
4.65
(0.02)
4.66
(0.04)
4.72
(0.04)
4.72
(0.09) -0.21 0.06 0.07 0
3 (Anti
Pos +
HEPES)
5.13
(0.05)
4.65
(0.07)
4.69
(0.11)
4.67
(0.12)
4.70
(0.12) -0.43 0.01 0.05 0.03
4 (Anti
Neg +
HEPES)
4.96
(0.18)
4.79
(0.04)
4.81
(0.04)
4.75
(0.06)
4.77
(0.06) -0.19 -0.04 -0.02 0.02
5 (Anti
Pos +
TRE)
5.03
(0.12)
4.46
(0.10)
4.65
(0.13)
4.54
(0.08)
4.51
(0.10) -0.52 -0.14 0.05 -0.03
6 (Anti
Neg +
TRE)
4.89
(0.15)
4.66
(0.03)
4.60
(0.06)
4.67
(0.04)
4.64
(0.06) -0.25 0.04 -0.02 -0.03
4th HCV
IS N/A
5.36
(0.15)
5.36
(0.09)
4.89
(0.23)
4.98
(0.12)
(Standard deviation values are shown in parenthesis)
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Table 3: Details of lyophilised candidate preparation, Study code S5
(NIBSC Code 14/150)
14/150
Number of Vials filled 1980
Mean fill mass (g) 1.1003
CV of fill mass (%) 0.29
Mean residual oxygen (%) 0.87
Mean residual moisture (%) 0.25
Table 4: Accelerated degradation studies of 14/150
-200C +4
0C +20
0C +37
0C +45
0C
3
months 5.09 ( - ) 5.17 ( +0.08) 5.02 (-0.07) 4.86 (-0.23) 4.92 (-0.17)
6
months 5.41 ( - ) 5.35 (-0.06) 5.27 (-0.14) 5.10 (-0.31) NT
*NT = not tested; Values in brackets indicate difference from -200C result
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Table 5: Laboratory Mean Estimates from Quantitative Assays
(log10 IU/mL)
Lab test Lab
code
S1 S2 S3 S4 S5 S6
Roche CAP/CTM v2 1a 4.94 4.13 5.04 5.65 5.06 2.37
Roche COBAS 6800 1b 5.11 4.03 5.14 5.66 5.28 2.73
Versant kPCR HCV RNA 2 5.27 4.47 5.06 5.80 5.07 2.38
Artus HCV QS-RGO Kit
V1 3 5.04 4.10 5.26 5.65 5.05 1.87
Abbott real time HCV
(0.5mL) 4 5.02 4.38 4.99 5.50 4.87 2.05
Roche COBAS 6800 5 5.15 4.48 5.04 5.48 5.10 2.17
Roche CAP/CTM v2 6 5.20 4.60 5.10 5.70 5.13 2.48
Qiagen QiaSymphony 13 4.96 4.32 4.98 5.48 5.18 2.33
Roche CAP/CTM v2 14 4.48 4.32 4.95 5.42 4.60 2.13
In house 17a 5.56 4.98 5.68 6.09 5.72 3.40
In house 17b 4.83 4.31 5.06 5.77 5.47
Roche CAP/CTM v2 18 5.39 4.55 5.22 5.46 5.35 2.59
Table 6: Laboratory Mean Estimates from Qualitative Assays
(NAT-detectable units/mL)
Assay Lab S1 S2 S3 S4 S5 S6
Procliex Ultrio 7 4.82 5.1 4.62
Roche MPX on 8800
analyser 8 4.97 3.64 5 6.73 4.68 1.84
Roche MPX on S201 9 4.67 3.84 4.69 5.36 4.78 1.78
Procliex Ultrio 10 5.07 4.26 5.25 6.26 4.61 1.89
Roche MPX on
Ampliprep 11 4.61 3.74 4.43 4.5 4.43 1.45
Roche MPX on
Ampliprep 12 5.02 3.82 4.5 5.02 4.81 2.6
Roche MPX on S201 15 6.06 3.62 6.06 6.07 4.47
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Table 7: Overall Mean Estimates and Inter-Laboratory Variation (log10
IU/mL for quantitative or NAT-detectable units/mL for qualitative assays)
Sample Assay n Mean SD GCV Min Max
S1 Qualitative 6 5.07 0.52 234% 4.61 6.06
Quantitative 12 5.08 0.28 89% 4.48 5.56
Combined 18 5.07 0.36 129% 4.48 6.06
S2 Qualitative 6 3.82 0.23 71% 3.62 4.26
Quantitative 12 4.39 0.26 81% 4.03 4.98
Combined 18 4.20 0.37 133% 3.62 4.98
S3 Qualitative 7 4.96 0.56 264% 4.43 6.06
Quantitative 12 5.13 0.20 58% 4.95 5.68
Combined 19 5.07 0.37 133% 4.43 6.06
S4 Qualitative 7 5.58 0.80 525% 4.50 6.73
Quantitative 12 5.64 0.19 55% 5.42 6.09
Combined 19 5.61 0.48 205% 4.50 6.73
S5 Qualitative 7 4.63 0.14 39% 4.43 4.81
Quantitative 12 5.16 0.28 93% 4.60 5.72
Combined 19 4.96 0.35 126% 4.43 5.72
S6 Qualitative 5 1.91 0.42 162% 1.45 2.60
Quantitative 11 2.41 0.41 157% 1.87 3.40
Combined 16 2.25 0.46 191% 1.45 3.40
Table 8: Intra-Laboratory standard deviation of log10 IU/mL in Quantitative
Assays
Lab S1 S2 S3 S4 S5 S6
1a 0.09 0.10 0.01 0.07 0.11 0.30
1b 0.16 0.10 0.04 0.04 0.11 0.05
2 0.11 0.03 0.15 0.07 0.04 0.13
3 0.08 0.17 0.03 0.10 0.12 0.11
4 0.08 0.02 0.05 0.04 0.08 0.03
5 0.06 0.07 0.05 0.07 0.05 0.05
6 0.06 0.02 0.02 0.02 0.07 0.24
13 0.02 0.04 0.14 0.08 0.06 0.54
14 0.48 0.04 0.12 0.20 0.14 0.20
17a 0.55 0.13 0.11 0.34 0.21 0.40
17b 0.03 0.02 0.05 0.04 0.03
18 0.03 0.05 0.06 0.07 0.14 0.08
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Table 9: Difference between samples (log10 IU/mL for quantitative
or NAT-detectable units/mL for qualitative assays)
Sample Rel to Assay n Mean SD GCV Min Max
S5 S1 Qualitative 6 -0.44 0.60 295% -1.59 0.11
Quantitative 12 0.08 0.22 67% -0.20 0.64
Combined 18 -0.09 0.45 179% -1.59 0.64
S5 S3 Qualitative 7 -0.34 0.63 329% -1.59 0.31
Quantitative 12 0.03 0.20 57% -0.35 0.41
Combined 19 -0.10 0.44 173% -1.59 0.41
S5 S4 Qualitative 7 -0.95 0.80 528% -2.05 -0.07
Quantitative 12 -0.48 0.21 61% -0.82 -0.11
Combined 19 -0.65 0.54 248% -2.05 -0.07
S2 S5 Qualitative 6 -0.81 0.26 80% -1.04 -0.35
Quantitative 12 -0.77 0.28 92% -1.26 -0.29
Combined 18 -0.78 0.27 85% -1.26 -0.29
S6 S5 Qualitative 5 -2.75 0.32 528% -2.05 -0.07
Quantitative 11 -2.72 0.23 71% -3.19 -2.32
Combined 16 -2.73 0.25 79% -3.18 -2.21
Table 10: Potency Estimates for candidate S5 in log10 IU/mL
Data Relative to n Mean 95% C.I. Stdev Qualitative 2nd IS
(5.00 log10 IU)
7 4.66 4.08 – 5.25 0.63
Quantitative 12 5.03 4.91 – 5.16 0.20
Combined 19 4.90 4.69 – 5.11 0.44
Qualitative 4
th IS
(5.41 log10 IU)
7 4.46 3.73 – 5.20 0.80
Quantitative 12 4.93 4.80 – 5.06 0.21
Combined 19 4.76 4.50 – 5.02 0.54
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Figure 1: Laboratory Mean Estimates for Sample S1 in log10 IU/mL
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
Log10 IU/ml
1 2 3 4 5 6 7
9
11
14
1a
1b
3
4
5
6
8
10
12
13
17b
2
17a
18
15
Quantitative Assays Qualitative Assays
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Figure 2: Laboratory Mean Estimates for Sample S2 in log10 IU/mL
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
Log10 IU/ml
1 2 3 4 5 6 7
8
11
15
1a
1b
3
9
12
2
4
5
6
10
13
14
17b
18
17a
Quantitative Assays Qualitative Assays
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Figure 3: Laboratory Mean Estimates for Sample S3 in log10 IU/mL
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
Log10 IU/ml
1 2 3 4 5 6 7
9
11
12
1a
1b
2
4
5
6
7
8
10
13
14
17b
18
3
17a
15
Quantitative Assays Qualitative Assays
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Figure 4: Laboratory Mean Estimates for Sample S4 in log10 IU/mL
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
Log10 IU/ml
1 2 3 4 5 6 7
11 7
12
1a
1b
3
4
5
6
9
13
14
18
2
15
17a
17b
8
10
Quantitative Assays Qualitative Assays
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Figure 5 Laboratory Mean Estimates for Sample S5 in log10 IU/mL
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
Log10 IU/ml
1 2 3 4 5 6 7
7
8
10
11
14
15
1a
2
3
4
5
6
9
12
13
1b
17a
17b
18
Quantitative Assays Qualitative Assays
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Figure 6 Laboratory Mean Estimates for Sample S6 in log10 IU/mL
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
Log10 IU/ml
1 2 3 4 5 6 7
11 3
4
5
8
9
10
14
1a
1b
2
6
12
13
18
17a
Quantitative Assays Qualitative Assays
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Figure 7 Relative Potency Estimates for Sample S5 relative to Sample S3
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Log10 IU/ml
2 3 4 5 6 7 8
15 8
10
14
1a
1b
2
3
4
5
6
7
9
11
13
17a
18
12
17b
Quantitative Assays Qualitative Assays
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Figure 8 Relative Potency Estimates for Sample S5 relative to Sample S4
Num
ber
of Labora
tories
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Log10 IU/ml
2 3 4 5 6 7 8
8 10
15
2
14
1a
1b
3
4
5
6
7
9
12
13
17a
17b
11
18
Quantitative Assays Qualitative Assays
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Appendices 1- 10
Appendix 1: Pilot study participants
Participant Laboratory Country
Mr. Graham
Prescott
NIBSC UK
Dr. Hong Wang Roche Molecular Systems USA
Dr. Gregg Gorrin Siemens USA
Dr. John Buckels QIAGEN UK
Dr George
Schneider
Abbott Molecular Inc USA
Appendix 2: Assays used in the pilot study
COBAS ® AmpliPrep/COBAS ® TaqMan ® HCV
Test
COBAS ® AmpliPrep/COBAS ® TaqMan ® HCV
Test
VERSANT ® HCV RNA 1.0 Assay (kPCR)
artus HCV QS-RGQ assay
Abbott RealTime HCV Assay
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Appendix 3: covering letter for pilot study
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Appendix 4: Pilot study protocol and results return sheets
Collaborative Study to evaluate the stability of different candidate materials for the 5th
International standard for HCV
Objective
The aim of the study is to evaluate the stability of different candidate materials for the 5th WHO
International Standard for HCV.
Background
The 4thWHO International Standard (IS) for HCV (NIBSC code: 06/102) was first established in
2011 with sufficient stocks for 3 to 4 years. The collaborative study to established the IS
highlighted some stability issues with the material when stored at elevated temperatures
(+200C). It is now therefore shipped on dry ice and stored at -20 or lower on arrival.
At the SoGAT Blood Virology meeting (2012) it was decided to replace the IS earlier than
planned by first investigating the potential variables that could induce instability over time under
specific conditions.
Materials
The package consists of 28 different freeze dried and 6 liquid preparations (coded as below). The
quantity of each will vary and is dependent on the assay and the volume required for extraction.
There will be enough vials to repeat the assay on a second occasion.
Freeze Dried Liquid Preparations
A1-4 Bulk 1
B1-4 Bulk 2
C1-4 Bulk 3
D1-4 Bulk 4
E1-4 Bulk 5
F1-4 Bulk 6
G1-4
Caution
THESE PREPARATIONS ARE NOT FOR ADMINISTRATION TO HUMANS
Both liquid and freeze dried materials are potentially infectious. Please take care and wear
suitable PPI in a contained lab when opening/preparing vials.
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Study Protocol
For each assay, one panel of the freeze dried material (A1-4 to G1-4) should be reconstituted
with 0.5mL of nuclease free water and left for a minimum of 20 minutes with occasional
agitation before use (please see attached IFU for further details). Frozen liquid preparations
(Bulk 1 to 6) should be removed from -70 storage and thawed just prior to use. All panel
members should be prepared and tested at the same time in a single assay. We do not recommend
that vials should be used after a freeze thaw cycle.
Participants are requested to perform two independent assays. A fresh vial of each reagent should
be used in each assay.
If your assay requires more than 0.5mL; pool the content of two/three vials of the same sample
code. Your shipment should contain sufficient vials to accommodate your assay.
For Quantitative assays
Assay samples A1-4 to G1-4 and Bulks 1-6 undiluted, where possible two assays should be
carried out on separate occasions.
For Qualitative assays
Assay samples A1-4 to G1-4 and Bulks 1-6 to determine the HCV RNA end-point. We would
suggest using 4 tenfold dilutions initially to determine an end point. Samples should be diluted in
human plasma previously determined to be negative for HCV RNA.
In the subsequent assays participants are requested to assay a minimum of two half log dilutions
either side of the pre-determined end point.
Results
Results of each assay should be recorded on the appropriate result form included with this
information sheet.
Please ensure the method details form is also complete.
Please Note: If your lab is not able to test all samples as outlined above due to logistical
problems, then please contact Clare Morris ([email protected]) to discuss a bespoke
protocol.
Data should be returned no later than 21-May-2014 to allow sufficient time for statistical
analysis and preparation for presenting this data at the SoGAT 2nd Joint Blood Virology and
Clinical Diagnostics meeting 2014 to be held in Graz, Austria 28/29th May 2014.
All completed forms should be returned to:
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Clare Morris
Division of Virology
NIBSC
Blanche Lane
South Mimms
Potters Bar
Hertfordshire.
EN6 3QG
UK
Fax: +44 1707 641 060
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Appendix 5: Study results sheets
HCV Stability Collaborative Study
Method Reporting
Name of Participant/Lab Code:
Extraction Method:
Diluent Used
Extraction Protocol
Extraction Instrument (If Used)
Volume Extracted
Volume Eluted
Amplification Method
HCV NAT Assay
HCV gene target
Thermal cycler used
Volume of RNA amplified
Assay 1
Date: Name of Participant/Lab Code:
Operator :
Sample
HCV Result
IU/mL
Crossing point/Ct Value
(if applicable) Comments
A1
A2
A3
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A4
Bulk 1
B1
B2
B3
B4
Bulk 2
C1
C2
C3
C4
Bulk 3
Sample
HCV Result
IU/mL
Crossing point/Ct Value
(if applicable) Comments
D1
D2
D3
D4
Bulk 4
E1
E2
E3
E4
Bulk 5
F1
F2
F3
F4
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Assay 2
Date: Name of Participant/Lab Code: Operator :
Bulk 6
G1
G2
G3
G4
Sample
HCV Result
IU/mL
Crossing point/Ct Value
(if applicable) Comments
A1
A2
A3
A4
Bulk 1
B1
B2
B3
B4
Bulk 2
C1
C2
C3
C4
Bulk 3
Sample HCV ResultIU/mL
Crossing point/Ct Value
(if applicable) Comments
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D1
D2
D3
D4
Bulk 4
E1
E2
E3
E4
Bulk 5
F1
F2
F3
F4
Bulk 6
G1
G2
G3
G4
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Appendix 6: Pilot study IFU
Hepatitis C virus for Nucleic Acid Amplification Techniques
WHO HCV Samples 1-6
Version 1.0, 04th November 2014 1. CONTENTS
Samples 1, 2 & 6 Upon receipt, samples 1, 2 & 6 should be stored at -70°C or below. Samples 1, 2 & 6 contain approximately 1.1 mL of hepatitis C virus positive human plasma. Samples 3 - 5 Samples 3-5 should be stored at -70 or below. Samples 3 & 4 contain 0.5 mL of lyophilized hepatitis C virus (HCV) in a 2 mL crimp top glass vial. Prior to use, these samples must be reconstituted with 0.5 mL of deionised, nuclease-free, molecular-grade water. Sample 5 contains 1.1 mL of lyophilized hepatitis C virus in 5 mL screw cap glass vial. These vials should be left for a minimum of 20 minutes with occasional agitation before use. Further instructions for the dilution and testing of these study samples are provided in the study protocol accompanying the samples.
2. CAUTION THIS PREPARATION IS NOT FOR ADMINISTRATION TO HUMANS OR
ANIMALS. Samples 1-6 contain human plasma and infectious HCV. The human plasma in
which the HCV has been diluted was tested and found negative for HBsAg, HIV antibody, and HCV RNA by PCR.
As with all materials of biological origin, this preparation should be regarded as
potentially hazardous to health. It should be used and discarded according to your own laboratory's safety procedures. Such safety procedures probably will include the wearing of protective gloves and avoiding the generation of aerosols. Care should be exercised in opening ampoules or vials, to avoid cuts.
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3. DIRECTIONS FOR OPENING THE CRIMP TOP VIALS (SAMPLES 3 & 4)
Vials have a ‘flip-up’ circular cap. Either on the cap or the collar of the vial, there is
an indication of the point at which to lever off the cap. This exposes an area of the stopper through which reconstitution and withdrawal of the preparation can be made using a hypodermic needle and syringe. If use of a pipette is preferred, then fully remove the metal collar using, for example, forceps, taking care to avoid cuts by wearing appropriate gloves. Remove the stopper for access.
4. CITATION In any circumstance where the recipient publishes a reference to NIBSC materials,
it is important that the title of the preparation and any NIBSC code number, and the name and address of NIBSC are cited correctly.
5. LIABILITY AND LOSS Information provided by the Institute is given after the exercise of all reasonable
care and skill in its compilation, preparation and issue, but it is provided without liability to the Recipient in its application and use.
It is the responsibility of the Recipient to determine the appropriateness of the
materials supplied by the Institute to the Recipient (“the Goods”) for the proposed application and ensure that it has the necessary technical skills to determine that they are appropriate. Results obtained from the Goods are likely to be dependant on conditions of use by the Recipient and the variability of materials beyond the control of the Institute.
All warranties are excluded to the fullest extent permitted by law, including without
limitation that the Goods are free from infectious agents or that the supply of Goods will not infringe any rights of any third party.
The Institute shall not be liable to the Recipient for any economic loss whether
direct or indirect, which arise in connection with this agreement. The total liability of the Institute in connection with this agreement, whether for
negligence or breach of agreement or otherwise, shall in no event exceed 120% of any price paid or payable by the Recipient for the supply of the Goods.
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6. MATERIAL SAFETY SHEET
Physical properties (at room temperature)
Physical appearance Lyophilised power (samples 3,4 & 5) Frozen Liquid (samples 1,2 & 6)
Fire hazard None
Chemical properties
Stable Yes Corrosive: No
Hygroscopic No Oxidising: No
Flammable No Irritant: No
Other (specify) Contains infectious hepatitis C virus and material of human origin
Handling: See caution, section 2
Toxicological properties
Effects of inhalation: Avoid – contains infectious hepatitis C virus
Effects of ingestion: Avoid – contains infectious hepatitis C virus
Effects of skin absorption: Avoid – contains infectious hepatitis C virus
Suggested First Aid
Inhalation Seek medical advice – contains infectious hepatitis C virus
Ingestion Seek medical advice – contains infectious hepatitis C virus
Contact with eyes Wash with copious amounts of water. Seek medical advice.
Contact with skin Wash thoroughly with water.
Action on Spillage and Method of Disposal
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Spillage of ampoule contents should be taken up with absorbent material wetted with a virucidal agent. Rinse area with a virucidal agent followed by water. Absorbent materials used to treat spillage should be treated as biologically hazardous waste.
Appendix 7: Main study Assay representation
Assay Code Assay No. of data
sets
CTM COBAS® AmpliPrep/COBAS® TaqMan® HCV v2.0 4
COBAS® HCV Test (6800/8800 System) 2
kPCR VERSANT® HCV RNA 1.0 Assay (kPCR) 1
artus® HCV QS-RGQ Kit V1 1
Abbott RealTime HCV 1
In-House HCV 3
Qualitative Assays
Assay Code Assay
Procleix Ultrio Plus® Assay 1
Procleix Ultrio Assay 1
COBAS® MPX test, (6800/8800 Systems) 1
COBAS® TaqScreen MPX Test v2.0 (COBAS® s 201
system)
4
Appendix 8: Main study participants
Participant Laboratory Country
Mr. Graham
Prescott
NIBSC, South Mimms UK
Dr. Thomas Rotten CSL Behring, Bern Switzerland
Dr. YuYany Tangyi NIFDC, Beijing China
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Dr. Agnieszka
Dryla/
Dr. Christina Wolf
Baxter, Vienna Austria
Dr. Saeko Mizusawa National Institute of Infectious
diseases, Tokyo
Japan
Dr. Simon Carne Public Health England, Colindale UK
Dr. Cristina
Alemany
BIOMAT, Barcelona Spain
Dr. Antonia
Zucchini/
Dr. Alessia Monti
Kedrion, Lucca Italy
Dr. Giulio Pisani/
Dr. Karen Cristiano
National Center for
Immunibioloicals Research and
Evaluation (CRICVIB), Rome
Italy
Dr. Hong Wang Roche Molecular Systems,
Somerville
USA
Dr. Lutz Pichl GRC BTS West, Hagen Germany
Dr. Gregg Gorrin/
Dr. Lovedeep
Grewal
Siemens Healthcare Diagnostics,
Berkeley
USA
Dr. George
Schneider/
Dr. William
Camimiti
Abbott Molecular, Des Plaines USA
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Dr. John Buckels
Qiagen, Manchester UK
Dr. Micha Nubling Paul-Ehrlich-Institut (PEI), Langen Germany
Dr. Yi-Chen Yang Food & Drug Administration
(FDA), Taipei
Taiwan
Dr. Susanna
Wessberg/
Dr. Vesa
Kirjavainen
Finnish Red Cross Blood Service,
Helsinki
Finland
Appendix 9: Main study protocol and results sheets
Collaborative study to evaluate the candidate 5th WHO International Standard for
Hepatitis C Virus (HCV) for NAT-based assays
Study Protocol
Background and outline of the study
The World Health Organisation (WHO) Expert Committee on Biological Standardisation
(ECBS) has endorsed a proposal to replace the 4th WHO International Standard for Hepatitis C
Virus (HCV) for NAT-based assays in order to ensure continued supply of this reference
material.
Due to the instability seen in the 4th International standard when stored at elevated temperatures;
a pilot study was carried out earlier this year. This study included both antibody positive and
negative HCV material; held at different temperatures to access the impact on stability. Suitable
material has now been prepared for a larger study to establish the 5th International standard.
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Three lyophilised preparations are to be evaluated alongside three liquid preparations including a
commutability sample. A sufficient number of vials of each study sample are provided for your
assays system. Participants are asked to test dilutions of each sample, using their routine HCV
NAT assay, on three separate occasions. Where possible, we would encourage laboratories to use
quantitative methods, however, data from qualitative assays will also be acceptable.
Study samples
Study samples comprise three liquid preparations in 2 mL screw cap tubes, two lyophilised
preparations in 2 mL crimp top glass vials, and one in a 5 mL screw cap vial; coded sample 1 - 6.
Three vials of each study sample are provided for evaluation on three separate occasions. Upon
receipt, all freeze dried samples should be stored at -20 °C or below. Liquid preparations should
be stored at -70 °C or below
CAUTION: Study samples 1-6 contain infectious HCV and should be handled only in
appropriate containment facilities by fully trained and competent staff in accordance with
national safety guidelines. These preparations contain human plasma, which has been tested and
found negative for HBsAg, and HIV antibody. Care should be taken when opening vials to avoid
cuts. See instructions for use for further details.
IMPORTANT NOTE ON VIAL ALLOCATION
Some vials in this study are in limited supply; in particular samples 3 and 4.
Please be aware that the number of vials sent reflects information that we have received on
volume requirements in your assay system.
Study protocol
Participants are requested to test dilutions of each study sample, using their routine HCV NAT
assay, on three separate occasions.
Prior to each assay run, samples 3 and 4 must be reconstituted with 0.5 mL and sample 5 with
1.1 mL of deionised, nuclease-free molecular-grade water and left for a minimum of 20 minutes
with occasional agitation before use.
Dilutions should be prepared in the diluent normally used in the assay system (e.g. anti-HCV and
HCV RNA negative human plasma).
Each sample must be extracted prior to amplification.
For each independent assay, study samples 1 - 6 should be tested within the same assay run.
Independent assays should be performed on separate days, using a fresh vial of each sample.
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Below, are specific instructions for the dilution and testing of study samples, using either
quantitative or qualitative assays.
For quantitative assays:
For each of three assays, participants are requested to test samples 1, 2 and 6 Neat.
Samples 3 – 5 should be tested, at a minimum of two serial ten-fold dilutions within the linear
range of the assay (e.g. 10-1 and 10-2). If practicable, please test as many replicates as possible
of each dilution of each sample (3 - 5) within the same assay run.
For qualitative assays:
For each of three assays, participants are requested to test the dilution at the assay end-point
(limit of detection), and a minimum of two half-log serial dilutions either side of the end-point
(i.e., at least five dilutions in total). If practicable, please test as many replicates as possible of
each dilution of each sample within the same assay run.
NB: Samples 1-5 contain approximately 1x105 IU/mL HCV RNA when reconstituted in the
specified volume of nuclease-free water.
For sample 6: We suggest starting your testing with the NEAT sample
Additional Guidance notes
For each sample please use all of the vial’s content or combine vial material to prepare both your
neat dilution and subsequent dilutions (10-1, 10-2 etc.) per assay i.e.
For assays requiring 200-350ul sample volume; only 1 vial will be provided for samples 3 and 4,
for each assay (3 in total) Both reconstitute in 0.5mL; Please use the remaining volume 150-
300ul to prepare your first dilution.
Similarly for assays requiring approximately 700ul; two vials will be required for samples 3 & 4.
For this volume please reconstitute as above and combine to create 1mL of each. Use the
remaining volume of 300ul to prepare your first dilution (10-1)
Reporting of results
The results of each assay (HCV concentration in IU/mL or qualitative result; positive / negative)
and methodology used, should be recorded on the Result Reporting Form accompanying the
samples. Where applicable, please also include the crossing point / threshold cycle for each
result. Results should be returned to NIBSC as soon as possible and before 30 January 2015, to
allow sufficient time for statistical analysis and preparation of the final report for submission to
the WHO Expert Committee for Biological Standardisation by July 2015.
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The data should not be published or cited before the formal establishment of the standard by the
WHO ECBS, without the expressed permission of the NIBSC study organiser.
Please Note: If your lab is not able to test all samples as outlined above due to logistical
problems, then please contact Graham Prescott ([email protected]) to discuss a
bespoke protocol.
All completed Result Reporting forms should be returned electronically to Graham Prescott
Alternatively, results may be mailed or faxed to:
Address: Graham Prescott, National Institute for Biological Standards and Control, Blanche
Lane, South Mimms, Potters Bar, Hertfordshire, EN6 3QG.
Fax: +44 (0)1707 641060
Data analysis
All data from the study will be analysed at NIBSC. The analysis will assess the concentration of
each sample, relative to each other, and the sensitivities of the different assay methods.
Individual participants’ data will be coded and reported “blind” to other participants during the
preparation of the study report, and also in subsequent publications. Participants will receive a
copy of the report of the study and proposed conclusions and recommendations for comment
before it is further distributed. It is normal practice to acknowledge participants as contributors
of data rather than co-authors in publications describing the establishment of the standard.
Results Sheets: Collaborative study to replace the 4th WHO International Standard for
Hepatitis C Virus RNA for nucleic acid amplification techniques
Method Reporting:
Name of Participant/Lab Code:
Extraction Method:
Diluent Used
Extraction Protocol
Extraction Instrument (If Used)
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Volume Extracted
Volume Eluted
Amplification Method
HCV NAT Assay
HCV gene target
Thermal cycler used
Volume of RNA amplified
Assay 1
Date: Name of Participant/Lab Code: Operator :
Sample
HCV Result
IU/mL
Crossing point/Ct Value
(if applicable) Comments
Sample 1
Neat
Sample 2
Neat
Sample 3
Neat
Sample 3
1:10
Sample 3
1:100
Sample 4
Neat
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Assay 2
Date: Name of Participant/Lab Code: Operator :
Sample 4
1:10
Sample 4
1:100
Sample 5
Neat
Sample 5
1:10
Sample 5
1:100
Sample 6
Neat
Sample HCV Result/IU/mL
Crossing point/Ct Value
(if applicable) Comments
Sample 1
Neat
Sample 2
Neat
Sample 3
Neat
Sample 3
1:10
Sample 3
1:100
Sample 4
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Assay 3
Date: Name of Participant/Lab Code: Operator :
Neat
Sample 4
1:10
Sample 4
1:100
Sample 5
Neat
Sample 5
1:10
Sample 5
1:100
Sample 6
Neat
Sample
HCV Result
IU/mL
Crossing point/Ct Value
(if applicable) Comments
Sample 1
Neat
Sample 2
Neat
Sample 3
Neat
Sample 3
1:10
Sample 3
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1:100
Sample 4
1:10
Sample 4
1:100
Sample 5
Neat
Sample 5
1:10
Sample 5
1:100
Sample 6
Neat
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Appendix 10: Main study covering letter: