Status 2008EWDBEWDB

2 nd Cereals Network Group MeetingIzmir – Foça , 21 April 2008Izmir Foça , 21 April 2008

EWDB 2008EWDB 2008

Content:

1. History2 Passport and web page2. Passport and web page3. Characterization/evaluation4 EURISCO and EWDB4. EURISCO and EWDB5. EWDB and AEGIS 6 Assessment of WWG documentation activities6. Assessment of WWG documentation activities 7. Phase VIII priorities

EWDB

1 EWDB history1. EWDB history1995 – EU project on European wheat collections submitted

(14 EU partners +1non-EU) - the first impulse

1996 th fi t WWG d h ti (BRG P i )1996 – the first WWG ad-hoc meeting (BRG Paris)estimation of European collections: about 240 000 acc.

1996 – database structure developed (CZE+FRA)1996 database structure developed (CZE+FRA)data request distributed

1997- data compilation started - in two centres (EU, non-EU)

J 1998 EWDB li 76 714 T itiJune 1998 - EWDB on-line 76 714 Triticum passp. rec.

April 2008 - 164 352 Triticum+Aegilops passport recs.

EWDB

April 2008 164 352 Triticum+Aegilops passport recs. 18 812 C&E data sets; 65 update sessions

1 EWDB: 1998-20081. EWDB: 1998-2008Total records: 74 716 ………… 164 352o eco ds: 7 7 6 ………… 6 35

180000

EWDB - RECORD NUMBER INCREASE

120000

140000

160000

180000

60000

80000

100000

120000

Rec

ord

no

0

20000

40000

60000

i i i i

01998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008

Year

EWDB

Estimation: 240,000 wheat accessions in Europe -EWDB: about 65%

2 Passport: Overview 20082. Passport: Overview 2008

C t d t idCOUNTRY PASSPORT-recs. COUNTRY PASSPORT-recs.ARM 1 285 ISR 721Current data providers:

59 contributing institutions32 t i ( ti 35 t i

AUT 2 206 ITA 6 161AZE 464 LTU 47BGR 12 854 LVA 56632 countries (representing 35 countries-

NGB: SWE, NOR, FIN, DNK)

BGR 12 854 LVA 566

BLR 19 MKD 51CHE 7 571 NLD 5 315CYP 80 POL 10 711

Countries without wheat collection: ISL, SVNCYP 80 POL 10 711

CZE 11 751 PRT 506DEU 26 727 ROM 3 346

EWDB missing countries: Alb i B l i B i d H i

ESP 2 928 RUS 37 039

EST 8 SVK 2 630FRA 1 949 SWE 625Albania, Belgium, Bosnia and Herzegovina, Croatia, Moldova, Malta, Montenegro

GBR 9 461 TUR 3 046GEO 146 UKR 7 372GRC 856 YUG 1 504

EWDB

HUN 6 375IRL 32 total 164 352

2 Passport: Updates 2005-20082. Passport: Updates 2005-2008Current passport: 164 352 records p p

Triticum: 156 525 (95%)Aegilops: 7 827 (5%)g p ( )

Changes since 2005:gAdopted list of Aegilops species (GRIN standard)

(excluded Amblyopyrum muticum, syn. Ae. mutica)Passport new records:

11 828 new records ( of it 7 827 Aegilops, 4001 Triticum)

Passport updates:

EWDB190 records

2 EWDB taxon composition2. EWDB taxon compositionEWDB - Triticum species composition (156 525 recs.)

TriticumaethiopicumTriticumcompactumHOSTEWDB - Aegilops species composition (7 827 recs.)

Triticum aethiopicum JAKUBZ.

1%

Triticum dicoccoides (KOERN. ex ASCHERS. et

GRAEBN.) SCHWEINF.1%Triticum monococcum L.

1%

Triticum boeoticum BOISS.1%

Triticum compactum HOST1% Triticum turgidum L.

1%

Aegilops sp. L

Aegilops vavilovii (ZHUK.) CHENNAV.

1%

Aegilops kotschyi BOISS.1%

Aegilops sharonensis EIG

Aegilops peregrina (HACK) MAIRE et WEILLER

Aegilops longissima SCHWEINF. et MUSCHL.

1%

Aegilops umbellulata ZHUK.1%

Aegilops columnaris ZHUK.1%

Triticum sp.

1%

Triticum dicoccon SCHRANK1%

Aegilops comosa SM.1%

1%Aegilops sharonensis EIG

1% 1%

Aegilops crassa BOISS.2%

Aegilops triuncialis L.24%

2%

Triticum spelta L.2%

Aegilops markgrafii (GREUTER) K.HAMMER

3%

Aegilops ventricosa TAUSCH2%

Triticum durum DESF.12%Aegilops speltoides TAUSCH4% Aegilops cylindrica HOST

16%

Triticum aestivum L.76%

Aegilops geniculata ROTH7%

Aegilops biuncialis VIS.8%

Aegilops neglecta REQ. ex BERTOL

Aegilops tauschii COSS.15%

EWDB

BERTOL.9%

15%

2 Passport: Data quality2. Passport: Data quality

Country of origin: 140 688 recs. (85.6%)

Donor: 107 293 records (65.2%)

Pedigree information: 17.7%16 392 records from 92 709 (known advanced cvs., ( ,breeding materials or landraces/primitive cultivars)

EWDB

2 Passport: Data quality-status2. Passport: Data quality-statuscode status CNT %

0 not known 54 083 32.91100 Wild 5 317 3.24110 natural 84 0.05120 semi-natural/wild 127 0.08200 Weedy 3 0.00300 Traditional cultivar/landrace 28 771 17.51400 Breeding/research material 20 984 12.77410 breeder's line 7 567 4.60411 synthetic population 8 0.00412 hybrid 152 0.09413 founder stock/base population 391 0.24415 segregating population 299 0.18420 mutant/genetic stock 537 0.33500 Advanced/improved cultivar 42 954 36.14999 Other (elaborate in REMARKS field) 3 075 1.87

EWDB

Total 164 352 100.00

2 Passport: Data quality2. Passport: Data quality

Seasonality/ growth class: 107 913 (65.6%)

Availability: 105 775 records (64.3%), category “Not available” accessions

Safety duplications: 8 768 recs. (5.3%)- the reality?

EWDB

2 Passport: Data quality2. Passport: Data quality

Collecting material: 46 179 recsCollecting material: 46 179 recs.

Collecting numbers: 27 199 recs ( 59%)Collecting numbers: 27 199 recs. ( 59%)Geo-referenced records:

4 381 (latitude) (9 5%)4 381 (latitude) (9.5%)4 118 (latitude+longitude) (8.9%)

older records don’t have coordinates;older records don t have coordinates;“strategic” information

Note: geo-reference related only to collecting missions, not to the institute providing data

EWDB

not to the institute providing data

2 EWDB web page updates2. EWDB web page updates

2006 li k d EWDB d d t b Wh t2006 - linked EWDB and database Wheat Pedigree and Identified Alleles Catalogue (74 527 d )(74 527 records)(one way link from EWDB, ID= Accession

t i )name, not unique)http://genbank.vurv.cz/wheat/pedigree/

Display of results in single search enlarged b C&E d tby C&E data

EWDB

3 EWDB Descriptors3. EWDB Descriptors

2006 Ad t d li t f 21 d i t ( il bl f th b)2006 Adopted list of 21 descriptors (available from the web)

alternative scoring (full and reduced) for descriptors D1-D3:alternative scoring (full and reduced) for descriptors D1 D3:1- Awnedness 1-3-5-7-9 or 1-5-92- Grain colour 1-2-3-4-5-6-7 or 1-4-6-73- Glume colour 1-2-3-4-5 or 1-2-4-5

D12 D21 re arranged susceptibilities to diseasesD12-D21 – re-arranged – susceptibilities to diseasesEnlargement of scoring scales by “X” for case of “variable expression” where necessaryexpression where necessary

EWDB

3 Characterization data -total3. Characterization data -totalinstcode Institute number of data setsARM002 AAAYerevan 108ARM002 AAAYerevan 108AUT001 AGB Linz, AAHF 756CZE122 RICP Praha 7 178ESP004 CRF Alcala de Henares 948EST001 Jogeva 8CHE001 SF RACNyon 4 957CHE001 SF RAC Nyon 4 957LTU001 LIADA Dotnuva 40MKD001 IA Skopje 51NLD037 CGN Wageningen 2 520PRT004 ENMP Elvas 100ROM007 GBSuceava 552ROM007 GB Suceava 552RUS001 VIR St. Petersburg 1 594

Total 18 812

EWDB18 812 data sets - about 12% Triticum recs.

3 Characterization data: update3. Characterization data: update

Update since 2005: 8 288 rec. sets

instcode Institute date of addition number of data setsARM002 AAAYerevan 5.10.2007 108CHE001 SF RAC Nyon 4.10.2007 4 957MKD001 IA Skopje 11.2.2008 51NLD037 CGNW i 5 2 2008 2 520NLD037 CGN Wageningen 5.2.2008 2 520PRT004 ENMP Elvas 15.10.2007 100ROM007 GBSuceava 25 3 2008 552ROM007 GB Suceava 25.3.2008 552

Total 8 288

EWDB

3 Characterization data: update 13. Characterization data: update 1Annex 3 of the WWG report meeting (La Rochelle, 2005)

EWDB

3 Characterization data: update 23. Characterization data: update 2

EWDB

3 Characterization data: update 33. Characterization data: update 3

+

EWDB

3 Characterization data: update3. Characterization data: update

12 countries (of 24 promising) provided C&E data cou es (o p o s g) p ov ded C& d

NGB sent data for D1 and D6 (2005) – not converted to ( )EWDB structure for about 180 acc.

Several countries didn’t participate in La Rochelle meeting in 2005 or didn’t declare their promises in the g preport Annex III :BGR, CYP, GBR, LVA, POL, SVK

EWDB

, , , , ,

3 Data example3. Data exampledescr. IPK TRI 3081 VIR k 21894PL 20678 CRF12846 ITA SAL T8803139 BG 1982-TRT-AE-877

country of origin PRT PRT PRT PRT PRTdescr. PRT TRI 3081/97 CGN05707 CGN06427 RICP01C0200835 publ. Dorofeev 1979

country of origin PRT PRT PRT PRT PRTreceived from PRT019 PRT CSK000 ESP043 USA007variety ferrugineum ferrugineum ferrugineumgrowth class spring spring spring

country of origin PRT PRT PRT PRTreceived from PRT004 NLD002 NLD002 PRT000 no.2786variety ferrugineum ferrugineum ferrugineum definitiongrowth class spring springg p g p gAwnedness D1 5 7 7(9)Grain colour D2 1 4 1 4 4Glume colour D3 4 2 1 2 2Glume hairiness D4 0 0 0 0 0? ?Glume hairiness D4 0 0 0 0 0Spike density D5 3 3 3 3Plant height D6 9 5? ?

EWDB

4 EURISCO data source4. EURISCO data source

European crop collection catalogue multicrop infoEuropean crop collection catalogue - multicrop info system – passport data only: 1 101 200 accessionshttp://eurisco ecpgr org/http://eurisco.ecpgr.org/

The new web application developedThe new web application developed.

EWDB

4 EWDB EURISCO4. EWDB & EURISCOEWDB: 156 525 wheat accessionsEWDB: 156 525 wheat accessions

7 827 Aegilops accessions

EURISCO: 157 921 Wheat accessions8 338 Aegilops accessions8 338 Aegilops accessions

EWDB downloaded passport records fromEWDB downloaded passport records from EURISCO:

12 119 Triticum (2003 2005)12 119 Triticum (2003-2005)6 809 Aegilops (2006)

EWDB

4 EWDB & EURISCO4. EWDB & EURISCOTriticum records

Name of national inventory EWDB EURISCO Name of national inventory EWDB EURISCOArmenia 252 246 Lithuania 47 38Austria 2174 1209 Macedonia 51 46Azerbaijan 396 913 Netherlands 5315 5551Belarus 19 0 Poland 10397 11358Bulgaria 12237 12400 Portugal 276 176Cyprus 80 80 Romania 3234 3237Czech Republic 10834 10419 Russian Federation 34808 34253Estonia 8 72 Slovakia 2616 4172France 1949 1967 Spain 2814 2840Georgia 146 146 Nordic Countries 614 1573Germany 25494 27613 Switzerland 7532 7266G 170 170 T k 3046 0Greece 170 170 Turkey 3046 0Hungary 6300 8445 Ukraine 7372 7373Ireland 32 32 United Kingdom 9461 9475Israel 620 620 Yugoslavia (Serbia) 1504 0

EWDB

Israel 620 620 Yugoslavia (Serbia) 1504 0Italy 6161 6208Latvia 566 23 Total 156525 157921

4 EWDB & EURISCO4. EWDB & EURISCOAegilops: Name of national inventory EWDB EURISCOAegilops: Armenia 1033 1259

Austria 32 32Azerbaijan 68 68B l i 617 617Bulgaria 617 617Czech Republic 917 924Germany 1233 1532Greece 686 686Greece 686 686Hungary 75 162Israel 101 0Italy 0 2yNordic Countries 11 11Poland 314 292Portugal 230 230Romania 112 112Russian Federation 2231 2248Slovakia 14 14Spain 114 114

EWDB

Spain 114 114Switzerland 39 35Total 7827 8338

4 EWDB & EURISCO4. EWDB & EURISCO

EWDB EURISCOTriticum records 156 525 157 929Aegilops record 7 827 8 338C&E data 12 812 nostandard taxonomy yes nostandard taxonomy yes nodata completeness medium lowupdate frequence low medium to highupdate eque ce o ed u to g

EWDB – crop oriented information, more detailed, historical records included, more complete, but update should be improved; wheat data portal (?)R d ifi li k f EWDB t EURISCO ill b f l

EWDB

Record specific links from EWDB to EURISCO will be useful

5 EWDB and AEGIS5. EWDB and AEGIS

ECPGR C WG d CCDB d l d l tGE ORIGCTY d t id t CNT GE ORIGCTY d t id t CNTECPGR Crop WG and CCDBs are declared as elements of AEGIS

GE_ORIGCTY=data provider country CNT GE_ORIGCTY=data provider country CNTARM 1 069 ISR 721AUT 727 ITA 1 467AZE 356 LTU 47

Responsibilities of AEGIS member countries – registered accessions- information kept in EURISCO

AZE 356 LTU 47BGR 2 413 LVA 26BLR 19 MKD 51CHE 2 641 NLD 181

and CCDBs

The MAA comprehensiveness of passport data and

CHE 2 641 NLD 181CYP 80 POL 908CZE+CSK 843 PRT 506DEU+DDR 1 997 ROM 1 414The MAA – comprehensiveness of passport data and

existence of C&E data will be one of criteria DEU DDR 1 997 ROM 1 414ESP 1 517 RUS+SUN 5 807EST 8 SVK 201FRA 1 949 SWE 141

Information sharing among participating countriesGBR 1 328 TUR 3 046GEO 145 UKR 1 088GRC 856 YUG 541

EWDB

Importance of WG plan for AEGIS implementationHUN 842 total 32 935

6 Assessment of WWG activities6. Assessment of WWG activitiesComments to important points:Comments to important points:

•Data quantity improvementi i i imissing countries: ALB, BEL, BiH, HRV, MDA, MLT, MNE

(don’t have any data in EURISCO)present EWDB content: 65% estimated records low progresspresent EWDB content: 65% estimated records –low progressindividual activities:ARM, CHE, CZE, IRL, ISR, MKD,PRTMKD,PRT

•Data quality improvement – updates – continuous task Empty fields (status, country of origin, donors, pedigree info, geo-references, etc.) –low progress – individual activitiesa few records updated only

EWDB

a few records updated only

6 Assessment of WWG activities6. Assessment of WWG activities

•Web page development- established the new link to the Wheat Pedigree and Alleles DB

•Importance of EWDB approved in relation to Global Conservation Strategy for Wheat (2006 meeting in CIMMYT) – development of strategic document.

EWDB

6 Assessment of WWG activities6. Assessment of WWG activitiesPriorities formulated by the Cereals Network meetingPriorities formulated by the Cereals Network meeting in La Rochelle 2005 of the WWG for Phase VII (part related to documentation):(part related to documentation):

Descriptors:Descriptors:• Triticum descriptor list enlarged and corrected

D1,2 and 3 – alternative scoring – doneD12-21 “diseases” corrected, additional value X - done

Plan for D1-6 and data delivery compiled (Annex 3) -done

EWDB

done

6 Assessment of WWG activities6. Assessment of WWG activities

• Characterization and evaluation data delivery –i i i i j i f Gvery limited progress - inactive majority of WWG

members

12 % EWDB data with characterization provided by 12 i ( f i i 24)12 countries (of promising 24)update since 2005 - individual activities :ARM, CHE,MKD NLD PRT ROUMKD, NLD, PRT, ROUthe Report Annex 3 plan failed

EWDB

6 Assessment of WWG activities6. Assessment of WWG activities

• List of accepted Aegilops species adopted.

• EWDB enlarged by Aegilops data:download from EURISCO: ARM, AUT, AZE, CHE, DEU, GBR, GRC, HUN, ESP, ROM, SVK, NGB, POL, PRT, RUS)Other Aegilops data sources:ISR – 101 records Ae. sharonensis from rescue collecting mission included (5 localities)CZE - 917 recs.

EWDB

6 Assessment of WWG activities6. Assessment of WWG activities

•Documentation of gene data in EWDB – no input(link to the on-line catalogue of wheat identified genes ( o e o e c ogue o w e de ed ge esestablished only)

•Safety duplication – no new inputEWDB contains information on 8 768 accessions kept pas SD

•Repatriation – no progress information

EWDB

6 Assessment of WWG activities6. Assessment of WWG activities

Note:

WWG – priority group in the Cereals NetworkAll updates dependent on WWG members activityLow data quality and absence of C&E data = low reliabilityImportance of data quality in relation to EURISCO and AEGIS

EWDB

7 Phase VIII - priorities7. Phase VIII - priorities

Priorities for wheat documentation in Phase VIII (2009Priorities for wheat documentation in Phase VIII (2009-2013):

• Sustainable improvement of data quantity+quality (members+DB man.)( )

• C&E data delivery (WWG members)

• List of MAA and AEGIS responsibilities (WWG members)members)

•EWDB development, links to EURISCO (DB man.)

EWDB

EWDBEWDBEWDBEWDB

Thank you for your attention!

EWDB