Evolutionary plasticity of cell-cycle regulation
Lars Juhl Jensen
Jensen & Knudsen, Bioinformatics, 2000
Jensen, Gupta et al., Journal of Molecular Biology, 2002
Szklarczyk, Franceschini et al., Nucleic Acids Research, 2011
Jensen & Bork, Science, 2008
Campillos, Kuhn et al., Science, 2008
signaling networks
Miller, Jensen et al., Science Signaling, 2008
Linding, Jensen, Ostheimer et al., Cell, 2007
Pafilis, O’Donoghue, Jensen et al., Nature Biotechnology, 2009
protein complexes
targeted degradation
Gauthier et al., Nucleic Acids Research, 2007
new scoring scheme
Gauthier et al., Nucleic Acids Research, 2007
protein complexes
de Lichtenberg, Jensen et al., Science, 2005
de Lichtenberg, Jensen et al., Science, 2005
just-in-time assembly
de Lichtenberg, Jensen et al., Cell Cycle, 2007
how can we test it?
evolutionary flexibility
microarray time courses
orthologous genes
Jensen, Jensen, de Lichtenberg et al., Nature, 2006
protein complexes
Jensen, Jensen, de Lichtenberg et al., Nature, 2006
low-throughput data
high-throughput data
Jensen, Jensen, de Lichtenberg et al., Nature, 2006
Jensen, Jensen, de Lichtenberg et al., Nature, 2006
correlated changes
Jensen, Jensen, de Lichtenberg et al., Nature, 2006
Jensen, Jensen, de Lichtenberg et al., Nature, 2006
transcriptional regulation
posttranslational regulation
phosphoproteomics
SILAC study of HeLa cells
multi-block strategy
Olsen, Vermeulen et al., Science Signaling, 2010
Olsen, Vermeulen et al., Science Signaling, 2010
regulation of kinases
Olsen, Vermeulen et al., Science Signaling, 2010
regulation by kinases
Olsen, Vermeulen et al., Science Signaling, 2010
evolution of cycles
other periodic processes
microarray time courses
Trachana, Jensen & Bork, EMBO Reports, 2010
Trachana, Jensen & Bork, EMBO Reports, 2010
Trachana, Jensen & Bork, EMBO Reports, 2010
paralogous genes
same cellular functions
different periodic processes
three independent lineages
high-throughput data
biological discoveries
Acknowledgments
Just-in-time assemblyUlrik de Lichtenberg
Thomas Skøt Jensen
Søren Brunak
Peer Bork
Comparison with othercycling processesKalliopi Trachana
Peer Bork
ProteomicsJesper V. Olsen
Michiel Vermeulen
Anna Santamaria
Chanchal Kumar
Martin Lee Miller
Florian Gnad
Jürgen Cox
Thomas Skøt Jensen
Erich A. Nigg
Søren Brunak
Matthias Mann