Apr 11, 2023 Pham Thai Hoa 1

ETOOL.MEFOR BIOLOGISTS

1/ WHAT IS ETOOL.ME

2/ FEATURES FOR BIOLOGISTS

3/ THE IMPORTANT BIOINFORMATICS TOOLS

4/ TECHNICAL OVERVIEW

5/ REFERRER LINK

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WHAT IS ETOOL.ME

Link at http://etool.meDevelop by the young and motivated

computer scientists and bioinformaticiansMakes bioinformatics tools more

accessibleBrings the best bioinformatics tools to the

workbenches of biologists or even to their cell phones

Makes the Etool platform usable for the bioligists to develop their tools

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FEATURES FOR BIOLOGIST

Channel - Sharing your research experiences: both failure and success

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FEATURES FOR BIOLOGIST

Quick support for the best bioinformatics tools

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FEATURES FOR BIOLOGIST

Latest news stories, reference articles, images, and books in bioinformatics

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FEATURES FOR BIOLOGIST

Educational resources for students

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FEATURES FOR BIOLOGIST

Publish important bioinformatics tools

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THE IMPORTANT TOOLS

Sibelia is a tool for finding synteny blocks

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THE IMPORTANT TOOLS

C-Sibelia is designed for comparison between two genomes represented

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THE IMPORTANT TOOLS

Breakage-fusion-bridge is a mechanism of genomic instability

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THE IMPORTANT TOOLS

SFselect is a method for classifying genomic regions

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TECHNICAL OVERVIEW

Front-end : Python, Javascript, HTML5Back-end : C/C++, Python, ErlangDatabase : PostgreSQL, Memcached and

Tokyo TycoonSearching : Apache LucenceFramework : Twitter Boostrap, Facebook

Tornado, Boost C/C++Algorithm : Stack, Queue, Tree, Bloom

Filter, LRU Caching, Sorting

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TECHNICAL OVERVIEW

Push notification center : Websocket, TCP/IP socket and HTTP

Scale : Cluster, Event Driven, Non-Blocking, Message Passing Protocol

Tools : C/C++, Python, Perl, R-LangBioinformatic : Suffix Array, Suffix String,

Graph, TreeSerialization/RPC : Apache thrift, Google

SnappyParallel and Distributed Programming

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TECHNICAL OVERVIEW

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REFERRER LINK

http://arxiv.org/abs/1307.7941http://arxiv.org/abs/1301.2610http://bioinf.ucsd.edu/~rronen/sfselect.htmlhttp://www.boost.org/http://tools.ietf.org/html/rfc6455http://www.tornadoweb.org/en/stable/http://memcached.org/http://www.postgresql.org/http://en.wikipedia.org/wiki/Suffix_arrayhttp://en.wikipedia.org/wiki/Bloom_filterhttp://snpeff.sourceforge.net/

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