Etool.Me Platform for Biologists
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Transcript of Etool.Me Platform for Biologists
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Apr 11, 2023 Pham Thai Hoa 1
ETOOL.MEFOR BIOLOGISTS
1/ WHAT IS ETOOL.ME
2/ FEATURES FOR BIOLOGISTS
3/ THE IMPORTANT BIOINFORMATICS TOOLS
4/ TECHNICAL OVERVIEW
5/ REFERRER LINK
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Apr 11, 2023 Pham Thai Hoa 2
WHAT IS ETOOL.ME
Link at http://etool.meDevelop by the young and motivated
computer scientists and bioinformaticiansMakes bioinformatics tools more
accessibleBrings the best bioinformatics tools to the
workbenches of biologists or even to their cell phones
Makes the Etool platform usable for the bioligists to develop their tools
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Apr 11, 2023 Pham Thai Hoa 3
FEATURES FOR BIOLOGIST
Channel - Sharing your research experiences: both failure and success
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Apr 11, 2023 Pham Thai Hoa 4
FEATURES FOR BIOLOGIST
Quick support for the best bioinformatics tools
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Apr 11, 2023 Pham Thai Hoa 5
FEATURES FOR BIOLOGIST
Latest news stories, reference articles, images, and books in bioinformatics
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Apr 11, 2023 Pham Thai Hoa 6
FEATURES FOR BIOLOGIST
Educational resources for students
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FEATURES FOR BIOLOGIST
Publish important bioinformatics tools
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THE IMPORTANT TOOLS
Sibelia is a tool for finding synteny blocks
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Apr 11, 2023 Pham Thai Hoa 9
THE IMPORTANT TOOLS
C-Sibelia is designed for comparison between two genomes represented
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Apr 11, 2023 Pham Thai Hoa 10
THE IMPORTANT TOOLS
Breakage-fusion-bridge is a mechanism of genomic instability
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THE IMPORTANT TOOLS
SFselect is a method for classifying genomic regions
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TECHNICAL OVERVIEW
Front-end : Python, Javascript, HTML5Back-end : C/C++, Python, ErlangDatabase : PostgreSQL, Memcached and
Tokyo TycoonSearching : Apache LucenceFramework : Twitter Boostrap, Facebook
Tornado, Boost C/C++Algorithm : Stack, Queue, Tree, Bloom
Filter, LRU Caching, Sorting
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Apr 11, 2023 Pham Thai Hoa 13
TECHNICAL OVERVIEW
Push notification center : Websocket, TCP/IP socket and HTTP
Scale : Cluster, Event Driven, Non-Blocking, Message Passing Protocol
Tools : C/C++, Python, Perl, R-LangBioinformatic : Suffix Array, Suffix String,
Graph, TreeSerialization/RPC : Apache thrift, Google
SnappyParallel and Distributed Programming
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TECHNICAL OVERVIEW
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REFERRER LINK
http://arxiv.org/abs/1307.7941http://arxiv.org/abs/1301.2610http://bioinf.ucsd.edu/~rronen/sfselect.htmlhttp://www.boost.org/http://tools.ietf.org/html/rfc6455http://www.tornadoweb.org/en/stable/http://memcached.org/http://www.postgresql.org/http://en.wikipedia.org/wiki/Suffix_arrayhttp://en.wikipedia.org/wiki/Bloom_filterhttp://snpeff.sourceforge.net/
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