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Transcript of EPSRC Portfolio Partnership in Complex Fluids and Complex Flows Use Of Protein Structure Data For...
EPSRC Portfolio Partnership in Complex Fluids and Complex Flows
Use Of Protein Structure Data For The Prediction Of Ultrafiltration Separation Processes
Complete Amino Acid Sequence for BSA
Knowing the amino acid sequence of the protein enables the calculation of the total molecular weight and the specific volume. From these parameters it is possible to calculate the hydrodynamic size of the protein.
For BSA the following quantities are obtained:
Dry hard sphere radius 2.69 nm
Hydrodynamic radius 3.20 nm
The latter allows for a modified Gouy-Chapman model of the protein/solution interface with the Outer Helmholtz Plane at the distance of closest approach of hydrated sodium ions.
Amino Acid
Number of Amino Acids in
Molecule
Mass of Amino Acid
(Daltons)
Total Weight
(Daltons)
Weight % Specific Volume of Amino Acid
(Weight % x Sp. Vol) /
100
Ala (A) 46 71.09 3270.14 4.93 0.74 0.0365Arg (R) 23 156.19 3592.37 5.42 0.7 0.0379Asn (N) 13 114.11 1483.43 2.24 0.59 0.0132Asp (D) 41 115.09 4718.69 7.12 0.6 0.0427Cys (C) 35 103.15 3610.25 5.45 0.61 0.0332Gln (Q) 20 128.14 2562.8 3.87 0.67 0.0259Glu (E) 59 129.12 7618.08 11.49 0.66 0.0759Gly (G) 16 57.05 912.8 1.38 0.64 0.0088His (H) 17 137.14 2331.38 3.52 0.67 0.0236Ile (I) 14 113.16 1584.24 2.39 0.9 0.0215Leu (L) 61 113.16 6902.76 10.41 0.9 0.0937Lys (K) 59 128.17 7562.03 11.41 0.82 0.0935Met (M) 4 131.19 524.76 0.79 0.75 0.0059Phe (F) 27 147.18 3973.86 5.99 0.77 0.0462Pro (P) 28 97.12 2719.36 4.1 0.76 0.0312Ser (S) 28 87.08 2438.24 3.68 0.63 0.0232Thr (T) 34 101.11 3437.74 5.19 0.7 0.0363Trp (W) 2 186.21 372.42 0.56 0.74 0.0042Tyr (Y) 19 163.18 3100.42 4.68 0.71 0.0332Val (V) 36 99.14 3569.04 5.38 0.86 0.0463Total 582 - 66 284.81 100 - 0.7329
Amino acid sequence from Brown and Shockley (1982).
Theory – BSA Surface Charge
To describe the specific binding of chloride ions to a BSA molecule, a modification of an expression developed by Scatchard et al. (1950) has been used:
Z = 440 Cl exp -ze
kT
1 + 44 Cl exp -zekT
+ 33 Cl exp -ze
kT
1 + 1.1 Cl exp -zekT
Cl
- o
- o
- o
- o-
The total charge due to the amino acids on the surface of the BSA molecule may be calculated using the acid base equilibria data in the table above,
-+AB Z - Z = Z
The charge distribution is described by the non-linear PBE in spherical co-ordinates,
From the solution of the PBE, the charge density can be determined,
The surface potential of the particle, may also then be determined from,
From electroneutrality,
kTezsinh ze2n
drd
r2
drd
ro
o
2
2
drord dr
d
dro
oo
d) (a ad
2T
do a 4eZ -
pH
4 5 6 7 8 9 10 11
Zeta
Pot
entia
l /(m
V)
-60
-50
-40
-30
-20
-10
0
10
Measured ValuesPredicted Values
-log [Cl-]
0.5 1.0 1.5 2.0 2.5 3.0
Zeta
Pot
entia
l /(m
V)
-60
-50
-40
-30
-20
-10
Measured ValuesPredicted Values
Dependence on pH at an ionic strength of 0.03M NaCl.
Dependence on ionic strength of NaCl at pH 8.0.
Theory – Osmotic Pressure1) Electrostatic interactions
2) London-van der Waals interactions
The attractive force, may then simply be calculated from:
3) Entropic interactions
1 -
kTze
coshkTnS 31 = (D) f o
2
2
2
2
2
2H
A 2a + D4a - 1ln +
2a + D2a +
4aD + D2a
6A- = (D)V
dDdV
-= F AATT
32
65432
3ENT
1.04305 - 3 + 3 - 1X - 0.5 - - 0.67825 - + + 1
a43 =
kTP 3.9Y))- exp(Y(7.9 6.028 X
- 62 Y
where f (D) is the configurational electrostatic force
FATT is the dispersion force
PENT is the entropic pressure
Ah is the effective area per particle
(as suggested by Evans and Napper (1978))
This is defined by:
Thus the overall interparticle interactions may be represented by the osmotic pressure.
ENTATTh
P + F (D) fA
6 =
2h D/2) (a 32 A
Comparison of the osmotic pressure predictions with the experimental data
of Vilker et al. (1981) for BSA at pH 5.4 and 7.4 in 0.15M NaCl.
It is assumed that the electrostatically stabilised dispersion exists in a structurally regular packing form of minimum energy, hexagonal close packing. Using this assumption, the osmotic pressure at any point in the dispersion may be calculated via the summation of the colloidal interactions occurring.
Theory – Gradient Diffusion Coefficient
1) S(), the thermodynamic coefficient:This may be calculated from the osmotic pressure which in turn depends on the particle-particle interactions.
a6kT = D0
D( ) = D K( )S( )
= D K( ) ( ) 4 a3kT0 0
3
3kT
a4 )(
)S(
1 3
2) K(), the hydrodynamic interaction coefficient:
Disordered system equation:
Ordered system equation:
- 1 )K(
2a eff dr kT)]exp(-V(r)/ - [1 2a d
dr (r)F - V(r) TOT
r
(r)F f(r) (r)F ATTTOT
3
effo/d d
2a 0.55
Comparison of theoretical predictions with experimental results for BSA at
pH 6.5 and various ionic strengths.
Theory - Viscosity
where is the relative viscosity is the viscosity of the solution is the viscosity of the solvent is the intrinsic viscosity (= 2.5 for spheres)
)O( ][ 1 o
sr
3
effmax d
2a 0.7404
and
Perturbation Theory Method:
From the interaction energy it is possible to calculate an effective hard sphere diameter for charged particles,
2 0.3079 - 0.4842 0.6233 - 1.2989 0.0602 - 1.7876 - 1 )K( 3
53
43
23
1
rso][
Comparison of the viscosity predictions with the experimental data of Kozinski and Lightfoot (1972) for BSA at pH 6.7 in a 0.1M and 0.5M
buffer.
Krieger-Dougherty Equationmax ]-[
maxr - 1
where max is the maximum packing value
Einstein
For a face centred cubic array of hard spheres the maximum packing fraction is 0.7404. Therefore the index the Krieger-Dougherty equation is 1.85 for hard spheres.
Affect of Colloidal Interactions on ViscosityThe new maximum packing fraction may be determined from:
The intrinsic viscosity, [], is also affected by the colloidal interactions so this must be taken into account when using the Krieger-Dougherty equation.
Dilute Limit:The Stokes-Einstein equation:
Concentrated suspension:The generalised Stokes-Einstein equation:
K() is the hydrodynamic interaction coefficientS() is the thermodynamic coefficient
Knowing o/d, may be evaluated by equating the disordered and ordered equations.
The new order/disorder transition may now be determined:
Where
Theory – Frontal Filtration
Starting from a Darcy type expression and taking interparticle interactions into account gives rise to three equations that describe the time course of filtration:
HAPPAob
mm
2
K / - 1 ) - (1
1 - C1RAV
dtdV
dtdV
dtd
dVdt
= z zA
R + p = (t)pm
mo32
where V is the total volume filtered, t is the time, Cb is the particle bulk concentration, Rm is the membrane resistance, Am is the membrane area, p3 is the pressure on the reverse side of the membrane, p2(t) is the pressure at the interface between the membrane and filter cake, is the local voidage of the cake, KHAPP
is the local value of the Kozeny coefficient, oA accounts for the electroviscous effects.
Comparison of predictions with experiment for various conditions of ionic strength and pH.
At membrane wall, y = 2h
y)(x,u
yx
membrane
layerionconcentratdeveloping
(x)vw
suspensionbulk
wallsolid
0 yv x
u
yu
y xp1- y
u v xuu
oc c 0 v
2
2
o hh) -(y - 1 1.5u u
0 u 0 v 0 yc
0 u w
ww
Dcv
yc
ycDy y
c v xcu
msw r
- p v
Continuity equation:
Momentum equation:
Mass balance:
At inlet, x = 0:
At non-porous wall, y = 0:
This boundary condition represents no slip condition as well as the solute transport at the non-porous wall.
Theory – Cross Flow filtration
Permeate flux versus applied pressure for a 10g l-1 solution of BSA at pH 10.0 in 0.03M NaCl.
We are concerned with the development of predictive methods that require no adjustable parameters – that is ab initio methods that move from physics to process description. We have several projects developing methods for microfiltration, ultrafiltration and nanofiltration.
For ultrafiltration, the osmotic pressure, gradient diffusion coefficient and solution viscosity are key parameters required for these predictions.
The pertinent question to ask is: how can these three key parameters be theoretically predicted from knowledge of physical property information available in the biochemical literature?
We will use these predictions to model frontal (dead-end) and cross flow ultrafiltration. In all cases the theoretical predictions obtained are compared to experimental data.
Introduction
PRIFYSGOL CYMRU ABERTAWE
UNIVERSITY OF WALES SWANSEA