Enzim internet

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Organic Chemistry 4 th Edition Paula Yurkanis Bruice Chapter 24 Catalysis Irene Lee Case Western Reserve University Cleveland, OH ©2004, Prentice Hall

Transcript of Enzim internet

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Organic Chemistry 4th Edition

Paula Yurkanis Bruice

Chapter 24

Catalysis

Irene LeeCase Western Reserve

UniversityCleveland, OH

©2004, Prentice Hall

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A catalyst is a substance that increases the rate of areaction without itself being consumed or changed

A catalyst increases the rate of the reaction by loweringthe ∆G‡ of the reaction

A catalyst can decrease ∆G‡ of the reaction by one of three different ways

Catalyst

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The Catalyst Converts the Reactant to a Less Stable Species

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The Catalyst Stabilizes the Transition State

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The Catalyst Changes the Mechanism of the Reaction

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A catalyst can provide a more favorable pathway for an organic reaction by:

• increasing the susceptibility of an electrophile to nucleophilic attack

• increasing the reactivity of a nucleophile

• increasing the leaving ability of a group by converting it to a weaker base

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Both the formation of the acyl imidazole and its subsequent hydrolysis are both faster than esterhydrolysis

Nucleophilic Catalysis

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An Acid-Catalyzed Reaction

A proton is donated to the reaction

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The acid increases the rates of both slow steps of thereaction

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In specific-acid catalysis, the proton is fully transferred before the slow step of the reaction

In general-acid catalysis, the proton is transferred during the slow step of the reaction

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Compare Specific-Acid Catalysis with General-Acid Catalysis

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A specific-acid must be a strong acid

A general-acid can be a weaker acid

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Base Catalysis

A base catalyst increases the rate of the reaction by removing a proton from the reaction

specific-base catalyzed dehydration

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The rate of the reaction is accelerated by stabilizationof the transition state

In specific-base catalysis, the proton is completely removed before the slow step of the reaction

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general-base catalysis

In general-base catalysis, the proton is removed duringthe slow step of the reaction

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Metal-Ion Catalysis

A. The metal ion increases the susceptibility of electron attack

B. The metal ion makes the leaving group a weaker base

C. The metal ion increases the nucleophilicity of water

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An Example of a Metal-Ion-Catalyzed Reaction

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Metal-Ion-Catalyzed Decarboxylation

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Metal-Ion-Catalyzed Ester Hydrolysis

The metal-bound hydroxide is a better nucleophile thanwater

The metal ion also decreases the basicity of the leavinggroup

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The relative rates are also called the effective molarity

The effective molarity is the advantage given to a reaction

The relative rate of reactant D is higher than the relativerate of B because the groups in D are less apt to adoptan unfavorable conformation for the reaction

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Putting a reacting group and a catalyst in the samemolecule increases the rate of the reaction

Intramolecular catalysis is also known as anchimeric assistance

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The trans isomer reacts much faster than the cis isomer

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The rate of phenyl acetate hydrolysis is enhanced by an intramolecular general base catalysis

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In the presence of nitro groups, the ortho-carboxylsubstituent acts as an intramolecular nucleophilic catalyst

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An Intramolecular Metal-Ion Catalysis

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Most Biological Catalysts Are Enzymes

The reactants are called substrates

The substrate specifically fits and binds to the active site

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Hexokinase undergoes a conformational change uponbinding to a substrate

red: before substrate-bindinggreen: after substrate-binding

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Important Features that Contribute to the Catalytic Ability of Enzymes

• Reacting groups are brought together at the active site in the proper orientation for reaction

• Some of the amino acids in the enzyme serve as catalytic groups; many enzymes have metal ions as catalysts

• Groups on the enzyme can stabilize the transition state of the reaction

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Carboxypeptidase A catalyzes the hydrolysis of theC-terminal peptide

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The binding pocket at the active site of serine proteasesdictates substrate specificity

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The Proposed Reaction Mechanism of a Serine Protease

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Lysozyme Is an Enzyme that Destroys Bacterial Cell Walls

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The amino acids at the active site of

lysozyme are involved in binding

the substrate

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The Proposed Reaction Mechanism for Lysozyme

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The pH-rate profile of an enzyme is a function of thepKa values of the catalytic groups in the enzyme

a group iscatalytically

active in its basicform

a group iscatalytically

active in its acidicform

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Glucose-6-phosphate Isomerase