Env 1 st + 2 nd cdp3 rd cdp gag pol tax 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd...
11
env 1 st + 2 nd cdp 3 rd cdp gag pol tax 1 st + 2 nd cdp 3 rd cdp 1 st + 2 nd cdp 3 rd cdp 1 st + 2 nd cdp 3 rd cdp Fig. S1
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Transcript of Env 1 st + 2 nd cdp3 rd cdp gag pol tax 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd...
env
1st + 2nd cdp 3rd cdp
gag pol
tax
1st + 2nd cdp 3rd cdp1st + 2nd cdp 3rd cdp
1st + 2nd cdp 3rd cdp
Fig. S1
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
75
97
78
96
100
100
99
68
100
100
99
9394
100
74
NJ gag (1041-bp)
0.01
Fig. S2a
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
100
95
100
100
100
100
85
82
100
100
99
100
100
100
75
82
100
NJ pol (2418-bp)
0.05
Fig. S2b
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
81
100
94
100
100
100
100
90
84
100
98
99
100
70
82
85
88NJ env (1299-bp)
0.02
Fig. S2c
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
100
90
100
90
80
96
74
98
99
100
100
99 92
100
71
75
96
NJ tax (960-bp)
0.01
Fig. S2d
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
100
100
97
100
97
100
100
100
100
100
99
100
100
100
100
100
100
100
100
94
100NJ entire genome sans LTR (6934-bp)
0.05
Fig. S2e
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
0.2
97
9281
99
9995
99
100 99
92
100
79
100
100
97
96
85
99
100
ML gag (1041-bp)
Fig. S2f
Fig. S2g
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
ML pol (2418-bp)
0.3
100
100
100
100
100
90
99
92
100
99
100
100
100
97
87
90
74
Fig. S2h
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
ML env (1299-bp)
0.3
79
98
9976
99
95
94
100
100
93
99
99
98
100
100
100
HTLV-1(ATK)
HTLV-1(Boi)
HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
ML tax (960-bp)
0.08
99
95
99
97
9875
99
100
100
100
90
100
99
96
99
Fig. S2i
Fig. S2j
HTLV-1(ATK)
HTLV-1(Boi)HTLV-1(ATL-YS)
HTLV-1(Mel5)
STLV-5(MarB43)
STLV-1(Tan90)
STLV-1(TE4)
HTLV-3(Pyl43)
HTLV-3(2026ND)
STLV-3(NG409)
STLV-3(Ph969)
STLV-3(CTO604)
STLV-3(TGE2117)
STLV-3(Ppaf3)
STLV-2(Pan-p)
HTLV-2b(G12)
STLV-2(pp1664)
HTLV-2a(Kay96)
HTLV-4(1863LE)
HTLV-2b(Gab)
HTLV-2b(G2)
HTLV-2a(MoT)
HTLV-2d(Efe)
HTLV-2a(SP-WV)
ML entire genome sans LTR (6934-bp)
0.2
100
100
96
96
100
100
100
100
99
100
86
10099
100
100
100
100
99
100
99
