Efficiencies of bacterial transmission from plants to seeds and … · 2018. 5. 14. ·...
Transcript of Efficiencies of bacterial transmission from plants to seeds and … · 2018. 5. 14. ·...
Marie-Agnès Jacques
Efficiencies of bacterial transmission from plants to seeds and from seeds to
plantlets
Plant pathogenic MO
Pathogenic MO (E. coli STEC O104:H4)
PGPR
?
Seeds: vectors of a diversified microbiota
Strategic step to control diseases
Long-term inoculum survivalLong distance dissemination
Introduction to new area
Contaminated seed: source of primary inoculum
Critical step in plant pathogen ecology and
disease epidemiology
Seed transmission
Rely on a better understanding of mechanismsand pathways used for seed transmission
X. fuscans subsp. fuscansX. citri pv. fuscansX. axonopodis pv.phaseoli var. fuscans
Xap 1
Xap 2
Xap 3
Phaseolus vulgaris
The causal agents of CBB of bean: 4 genetic lineages
X. axonopodis sensu Vauterin et al., 2000; Rademaker et al., 2005
X. axonopodis pv. phaseoliX. fuscans subsp. fuscans
Role of look-alikes in transmission of Xff to bean seeds
Translocation of gfp-tagged strain of Xff to seeds using confocal scanning-laser microscopy
Efficiencies of transmissions of CBB agents from seeds to plantlets.
. 23 look-alikes of CBB agents
gyrB, rpoDNJ, 1000 bootstraps
Look-alikes of CBB agents isolated from bean 7604
7605
7602
7609
7620
7608
7618
7607
7614
7615
7612
7603
7611
SNES1
7613
7616
7617
7610
2535|Xarboricolapv.pruni
V1
V10
1159|Xarboricolapv.corylina
3523|Xarboricolapv.celebensis
SNES3
SNES24
V3
6827|Xanthomonas arboricola
2528|Xarboricolapv.juglandis
SNES12
V11
6771|Xarboricolapv.fragariae
7622
3122|Xarboricolapv.populi
3123|Xarboricolapv.populi
3839|Xarboricolapv.populi
V12
X. arboricola
6766|Xfragariae
6767|Xfragariae
5258|Xfragariae
4643|Xpisi
5235|Xcampestrispv.vesicatoria
6823|Xvesicatoria
4645|Xvesicatoria
ICMP84|Xdyei laureliae
ICMP12167|Xdyei
ICMP2415|Xdyei dysoxyli
ICMP5382|Xdyei
27|Xcynarae
3887|Xcynarae
4188|Xcynarae
3985|Xhortorumpv.vitians
6822|Xgardneri
500|Xhortorumpv.vitians
4925|Xhortorumpv.hederae
2533|Xhortorumpv.pelargonii
1817|Xpopuli
2112|Xpopuli
X. sp. 1 7625
4952|Xcampestris
1119|Xcampestrispv.campestris
LSV37.01
16.55.1
V15
3838|Xcampestrispv.armoraciae
5241|Xcampestrispv.campestris
5828|Xcampestrispv.raphani
5829|Xcampestrispv.raphani
5827 1|Xcampestrispv.raphani
SNES2
LSV25
LSV40
2527|Xcampestrispv.incanae
7621
6865|Xcampestrispv.aberrans
5825|Xcampestrispv.barbareae
7627
1606|Xcampestrispv.incanae
X. campestris
7623
7624
7619
LSV12
SNES4
X. sp. 2
2286|Xoryzaepv.oryzicola
7327|Xoryzaepv.oryzicola
1948|Xoryzaepv.oryzae
2532|Xoryzaepv.oryzae
2543|Xvasicolapv.holcicola
5830|Xvasicola
7122|Xcampestrispv.musacearum
1976|Xbromi
3623|Xbromi
SNES9
SNES27
7112|Xaxonopodispv.vignicola
2913|Xaxonopodispv.anacardii
2901|Xaxonopodispv.citri
6165|Xaxonopodispv.phaseolivar.fuscans
5868|Xcampestrispv.viticola
3136|Xcampestrispv.bilvae
2531|Xaxonopodispv.mangiferaeindicae
2530|Xaxonopodispv.malvacearum
3369|Xaxonopodispv.citri
4924|Xaxonopodis
5823|Xaxonopodispv.vasculorum
4644|Xmelonis
5859|Xmelonis
5860|Xmelonis
6546|Xaxonopodispv.phaseoli
7153|Xaxonopodispv.manihotis
2524|Xaxonopodispv.begoniae
3133|Xaxonopodispv.dieffenbachiae
7293|Xperforans
6107|Xaxonopodispv.allii
3371|Xaxonopodispv.citrumelo
6864|Xcampestrispv.vesicatoria
SNES6
SNES5
SNES7
SNES29
X. axonopodis
2542|Xcucurbitae
4642|Xcassavae
4690|Xcodiaei
7279|Xcodiaei
2523|Xalbilineans
7063|Xalbilineans
2373|Xalbilineans
4641|Xsacchari
4691|Xtheicola
3524|Xtranslucenspv.graminis
2541|Xtranslucenspv.cerealis
2539|Xtranslucenspv.secalis
2055|Xtranslucenspv.undulosa
2054|Xtranslucenspv.translucens
2057|Xtranslucenspv.poae
2056|Xtranslucenspv.arrhenatheri
2062|Xtranslucenspv.phlei
54
60
99
99
99
99
99
64
99
95
63
50
99
66
73
31
63
99
99
53
40
99
95
99
99
99
99
96
96
73
62
85
77
74
69
60
45
41
59
54
52
44
42
33
38
10
22
25
20
18
5
17
73
54
47
99
99
97
75
66
54
31
42
27
10
30
22
39
89
98
99
91
89
66
78
89
59
99
85
97
70
99
90
92
98
33
63
72
97
97
67
38
36
98
87
42
99
98
78
70
59
49
32
91
99
66
99
76
98
82
95
87
97
81
69
84
0,01
X. arboricola
X. campestris
X. axonopodis
Xff
Xap1
Xap2Xap3
Seeds harbor look-alikes of CBB agents
Look-alikes interfere in detection of CBBagentsBoureau et al., 2013; Grimault et al., 2014
Phylogenetic tree of Xanthomonas
In vitro
antibiosis
and competition tests
to select strains among the 23 look-alikes that interact with CBB agents
Xff: 7767-R SNES 6V13
Xap GL1: 6546-R V12V13
Xap GL2: 6988-R SNES 27Xap GL3: 6996-R SNES 6
V13
Role of look-alikes in seed transmission of pathogens
4 CBB strains 7 look-alikesEach look-alike inhibitand/or outcompete one of the CBB agents
Pathogen alone
Look-alike alone
Mixtures Pathogen:look-alike (1:1)
5 plants / treatment
3 flower buds / plant
Flower bud inoculation(2 × 10 µL of a 1 × 106 cfu/mL)
Role of look-alikes in seed transmission of pathogenic strains
Xff: 7767-R SNES 6V13
Xap GL1: 6546-R V12V13
Xap GL2: 6988-R SNES 27Xap GL3: 6996-R SNES 6
V13
0
2
4
6
8
10
Popu
latio
n si
zes
(Log
10 C
FU/g
of
seed
)Population sizes of mature seeds
Pathogenic strain alone
Non-pathogenic strain alone
Pathogenic strain in mix
Non-pathogenic strain in mix
aa
aa
a a aa
a a
a a a a
b
b b b b b b b b b
b
b b b
Pathogen alone
Look-alike alone
Pathogen in mix
Look-alike in mix
Detection threshold
7767-RSNES 6
7767-RV13
6546-RV13
6546-RV12
6988-RSNES 27
6996-RSNES 6
6996-RV13
Role of look-alikes in seed transmission of pathogenic strains
0
2
4
6
8
10
Popu
latio
n si
zes
(Log
10 C
FU/g
of
seed
)Population sizes of mature seeds
Pathogenic strain alone
Non-pathogenic strain alone
Pathogenic strain in mix
Non-pathogenic strain in mix
Detection threshold
aa
aa
a a aa
a a
a a a a
b
b b b b b b b b b
b
b b b
Pathogen alone
Look-alike alone
Pathogen in mix
Look-alike in mix
Detection threshold
7767-RSNES 6
7767-RV13
6546-RV13
6546-RV12
6988-RSNES 27
6996-RSNES 6
6996-RV13
No transmission of look-alikesNo effect of look-alikes on pathogen transmission
Role of look-alikes in seed transmission of pathogenic strains
Xylem colonization by look-alikes and pathogenic strains
Cataphyll: 1st leaf
1st trifoliate
0 1 and 2 jpi
7767-R SNES 6V13
6546-R V12V13
6988-R SNES 276996-R SNES 6
V13
Pathogen alone
Look-alike alone
Pathogen in mix
Look-alike in mix
Popu
latio
n si
zes
(Log
10 C
FU/g
fres
hw
eigh
t)
7767-R / SNES6
01234567
Inoc Point > cata > cata
0 1 dpi 2 dpî
a a aab b bb
c cc
c
0
2
4
6
8
Inoc Point > cata > cata
0 1 dpi 2 dpî
a a aab b b b
c c cc
7767-R / V13
01234567
Inoc Point > cata > cata
0 1 dpi 2 dpî
a a aab b bb
c cc
c
6546-R / V13
012345678
Inoc Point > cata > cata
0 1 dpi 2 dpî
a a aab b bb
c cc
c
6546-R / V12
01234567
Inoc Point > cata > cata
0 1 dpi 2 dpî
a a aab b bb
c ccc
6996-R / V13
01234567
Inoc Point > cata > cata
0 1 dpi 2 dpî
a a aab b bb
c cc
c
6996-R / SNES6
01234567
Inoc Point > cata > cata
0 1 dpi 2 dpî
a a aab b bb
c c cc
6988-R / SNES27
No difference between pathogens and look-alikes
Pathogen alone
Look-alike alone
Pathogen in mix
Look-alike in mix
Xylem colonization by look-alikes and pathogenic strains
cataphyll
1st trifoliate
0 1 and 2 jpi
Look-alikes and transmission to seed of CBB agents
Plant pathogenic MO
Pathogenic MO
PGPR?
Not possible to monitor transmission to seeds for look-alikesBut look-alikes are isolated from seeds
Do not seem to interfere with pathogen transmission to seedNot good candidates for biocontrol
Role of look-alikes in transmission of Xff to bean seeds
Translocation of gfp-tagged strain of Xff to seeds using confocal scanning-laser microscopy
Efficiencies of transmissions of CBB agents from seeds to plantlets.
Mother plantSeed
Localization of Xff during seed formation on bean plants
Xff gfp-tagged cell following spray inoculation of bean plants at flower bud stage
seed
counterpalisade
funicule
Tracheid bar
parenchyma
hilar fissure
28 dai
Transversal cut at the hile
Mother plantSeed
Localization of Xff during seed formation on bean plants
Xff gfp-tagged cell following spray inoculation of bean plants at flower bud stage
seed
counterpalisade
funicule
Tracheid bar
parenchyma
hilar fissure
Aperture in the counterpalisade of the hile
Tracheid bar
funicule
seed
Localization of Xff during seed formation on bean plants
Xff gfp-tagged cell following spray inoculation of bean plants at flower bud stage
Mother plant
Role of look-alikes in transmission of Xff to bean seeds
Translocation of gfp-tagged strain of Xff to seeds using confocal scanning-laser microscopy
Efficiencies of transmissions of CBB agents from seeds to plantlets.
4 days after sowing in germ boxes 7 days after sowing in soil
Spray-inoculation of R5-beans
Harvest of seeds 6 wk later
Transmission rates of seed borne bacteria under optimal conditions
Transmission rates of seed borne bacteria under optimal conditions
Large range of Contamination Rates of seed lotsAnd of associated population sizes
Popu
latio
n siz
es o
n se
eds
(Log
cfu
/g o
f see
ds)
Contamination rates of seed lots
0
1
2
3
4
5
6
7
8
0 20 40 60 80 100 120
Results from 29 bean seed lots harvested from plants inoculated with CBB agents
Transmission rates of seed borne bacteria under optimal conditions
0
0,5
1
1,5
2
2,5
0 5 10 15 20 25 30 35
Tran
smiss
ion
rate
s
6546-R7430
6936-R
6937-R
6938-R
Xap GL1
6988-RXap GL2
6996-RXap GL3
7112-RXav4834-R
7767-R
4884-R
Xff
SNES22-R
0
0,5
1
1,5
2
2,5
0 5 10 15 20 25 30
6546-R7430
6936-R
6937-R
6938-R
Xap GL1
6988-RXap GL2
6996-RXap GL3
7112-RXav4834-R
7767-R
4884-R
Xff
SNES22-R
Tran
smiss
ion
rate
s
TR 4: CR plantlet lots 4 dai/ CR seed lots TR 7: CR plantlet lots 7 dai/ CR seed lots
Transmission rates of seed borne bacteria under optimal conditions
High TR from seeds to plantlets: 0.6 to 1.5 (2) for CBB agents
Transmission efficiency varies for a same strain (high variability for Xav strain CFBP 7112)
TR ~ 1 when analyzed 4 dai, more variable when determined 7 dai
0
0,5
1
1,5
2
2,5
0 5 10 15 20 25 30 35
Tran
smiss
ion
rate
s
6546-R7430
6936-R
6937-R
6938-R
Xap GL1
6988-RXap GL2
6996-RXap GL3
7112-RXav4834-R
7767-R
4884-R
Xff
SNES22-R
0
0,5
1
1,5
2
2,5
0 5 10 15 20 25 30
6546-R7430
6936-R
6937-R
6938-R
Xap GL1
6988-RXap GL2
6996-RXap GL3
7112-RXav4834-R
7767-R
4884-R
Xff
SNES22-R
Tran
smiss
ion
rate
s
TR 4: CR plantlet lots 4 dai/ CR seed lots TR 7: CR plantlet lots 7 dai/ CR seed lots
Transmission rates of seed borne bacteria under optimal conditions
All seed contaminations lead to plantlet contamination if analyzed 4 daiContamination rates of plantlets lots are more or less predictable from mean population sizes in seedsPopulation threshold (1 × 103 cfu/g of seed) on seeds for an efficient contamination of plantlets (4 dai)
If analyses are made on leaves of 7 days-old plantlets, contaminations are highly variable and not predictable from populations sizes determined on seeds.
0
20
40
60
80
100
120
0 1 2 3 4 5 6 7 8
Population sizes on seeds (Log cfu/g of seeds)
Cont
amin
atio
n ra
tes o
f pla
ntes
0
20
40
60
80
100
120
0 1 2 3 4 5 6 7 8
Plantlets 4 d after imbibition Leaves of 7 days-old plants
How do look-alikes transmit to seeds?Are they stopped by plant defenses in flower buds?
Bean bud inoculation lead to vascular transmission of Xff to seeds, and not only to ingress via the micropyle.
Analysis of plantlets 4 dai in germination boxes allows a good estimation of seed contaminations,BUT tend to over-estimate efficient transmission to plants as determined by contamination of the cataphylls
Conclusions
Acknowledgments
Armelle DarrasseJean-François Guimbaud
Anne Préveaux
INEM
Thank you for your attention