Efficiencies of bacterial transmission from plants to seeds and … · 2018. 5. 14. ·...

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Marie-Agnès Jacques Efficiencies of bacterial transmission from plants to seeds and from seeds to plantlets

Transcript of Efficiencies of bacterial transmission from plants to seeds and … · 2018. 5. 14. ·...

Page 1: Efficiencies of bacterial transmission from plants to seeds and … · 2018. 5. 14. · 6766|Xfragariae 6767|Xfragariae 5258|Xfragariae 4643|Xpisi 5235|Xcampestrispv.vesicatoria 6823|Xvesicatoria

Marie-Agnès Jacques

Efficiencies of bacterial transmission from plants to seeds and from seeds to

plantlets

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Plant pathogenic MO

Pathogenic MO (E. coli STEC O104:H4)

PGPR

?

Seeds: vectors of a diversified microbiota

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Strategic step to control diseases

Long-term inoculum survivalLong distance dissemination

Introduction to new area

Contaminated seed: source of primary inoculum

Critical step in plant pathogen ecology and

disease epidemiology

Seed transmission

Rely on a better understanding of mechanismsand pathways used for seed transmission

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X. fuscans subsp. fuscansX. citri pv. fuscansX. axonopodis pv.phaseoli var. fuscans

Xap 1

Xap 2

Xap 3

Phaseolus vulgaris

The causal agents of CBB of bean: 4 genetic lineages

X. axonopodis sensu Vauterin et al., 2000; Rademaker et al., 2005

X. axonopodis pv. phaseoliX. fuscans subsp. fuscans

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Role of look-alikes in transmission of Xff to bean seeds

Translocation of gfp-tagged strain of Xff to seeds using confocal scanning-laser microscopy

Efficiencies of transmissions of CBB agents from seeds to plantlets.

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. 23 look-alikes of CBB agents

gyrB, rpoDNJ, 1000 bootstraps

Look-alikes of CBB agents isolated from bean 7604

7605

7602

7609

7620

7608

7618

7607

7614

7615

7612

7603

7611

SNES1

7613

7616

7617

7610

2535|Xarboricolapv.pruni

V1

V10

1159|Xarboricolapv.corylina

3523|Xarboricolapv.celebensis

SNES3

SNES24

V3

6827|Xanthomonas arboricola

2528|Xarboricolapv.juglandis

SNES12

V11

6771|Xarboricolapv.fragariae

7622

3122|Xarboricolapv.populi

3123|Xarboricolapv.populi

3839|Xarboricolapv.populi

V12

X. arboricola

6766|Xfragariae

6767|Xfragariae

5258|Xfragariae

4643|Xpisi

5235|Xcampestrispv.vesicatoria

6823|Xvesicatoria

4645|Xvesicatoria

ICMP84|Xdyei laureliae

ICMP12167|Xdyei

ICMP2415|Xdyei dysoxyli

ICMP5382|Xdyei

27|Xcynarae

3887|Xcynarae

4188|Xcynarae

3985|Xhortorumpv.vitians

6822|Xgardneri

500|Xhortorumpv.vitians

4925|Xhortorumpv.hederae

2533|Xhortorumpv.pelargonii

1817|Xpopuli

2112|Xpopuli

X. sp. 1 7625

4952|Xcampestris

1119|Xcampestrispv.campestris

LSV37.01

16.55.1

V15

3838|Xcampestrispv.armoraciae

5241|Xcampestrispv.campestris

5828|Xcampestrispv.raphani

5829|Xcampestrispv.raphani

5827 1|Xcampestrispv.raphani

SNES2

LSV25

LSV40

2527|Xcampestrispv.incanae

7621

6865|Xcampestrispv.aberrans

5825|Xcampestrispv.barbareae

7627

1606|Xcampestrispv.incanae

X. campestris

7623

7624

7619

LSV12

SNES4

X. sp. 2

2286|Xoryzaepv.oryzicola

7327|Xoryzaepv.oryzicola

1948|Xoryzaepv.oryzae

2532|Xoryzaepv.oryzae

2543|Xvasicolapv.holcicola

5830|Xvasicola

7122|Xcampestrispv.musacearum

1976|Xbromi

3623|Xbromi

SNES9

SNES27

7112|Xaxonopodispv.vignicola

2913|Xaxonopodispv.anacardii

2901|Xaxonopodispv.citri

6165|Xaxonopodispv.phaseolivar.fuscans

5868|Xcampestrispv.viticola

3136|Xcampestrispv.bilvae

2531|Xaxonopodispv.mangiferaeindicae

2530|Xaxonopodispv.malvacearum

3369|Xaxonopodispv.citri

4924|Xaxonopodis

5823|Xaxonopodispv.vasculorum

4644|Xmelonis

5859|Xmelonis

5860|Xmelonis

6546|Xaxonopodispv.phaseoli

7153|Xaxonopodispv.manihotis

2524|Xaxonopodispv.begoniae

3133|Xaxonopodispv.dieffenbachiae

7293|Xperforans

6107|Xaxonopodispv.allii

3371|Xaxonopodispv.citrumelo

6864|Xcampestrispv.vesicatoria

SNES6

SNES5

SNES7

SNES29

X. axonopodis

2542|Xcucurbitae

4642|Xcassavae

4690|Xcodiaei

7279|Xcodiaei

2523|Xalbilineans

7063|Xalbilineans

2373|Xalbilineans

4641|Xsacchari

4691|Xtheicola

3524|Xtranslucenspv.graminis

2541|Xtranslucenspv.cerealis

2539|Xtranslucenspv.secalis

2055|Xtranslucenspv.undulosa

2054|Xtranslucenspv.translucens

2057|Xtranslucenspv.poae

2056|Xtranslucenspv.arrhenatheri

2062|Xtranslucenspv.phlei

54

60

99

99

99

99

99

64

99

95

63

50

99

66

73

31

63

99

99

53

40

99

95

99

99

99

99

96

96

73

62

85

77

74

69

60

45

41

59

54

52

44

42

33

38

10

22

25

20

18

5

17

73

54

47

99

99

97

75

66

54

31

42

27

10

30

22

39

89

98

99

91

89

66

78

89

59

99

85

97

70

99

90

92

98

33

63

72

97

97

67

38

36

98

87

42

99

98

78

70

59

49

32

91

99

66

99

76

98

82

95

87

97

81

69

84

0,01

X. arboricola

X. campestris

X. axonopodis

Xff

Xap1

Xap2Xap3

Seeds harbor look-alikes of CBB agents

Look-alikes interfere in detection of CBBagentsBoureau et al., 2013; Grimault et al., 2014

Phylogenetic tree of Xanthomonas

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In vitro

antibiosis

and competition tests

to select strains among the 23 look-alikes that interact with CBB agents

Xff: 7767-R SNES 6V13

Xap GL1: 6546-R V12V13

Xap GL2: 6988-R SNES 27Xap GL3: 6996-R SNES 6

V13

Role of look-alikes in seed transmission of pathogens

4 CBB strains 7 look-alikesEach look-alike inhibitand/or outcompete one of the CBB agents

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Pathogen alone

Look-alike alone

Mixtures Pathogen:look-alike (1:1)

5 plants / treatment

3 flower buds / plant

Flower bud inoculation(2 × 10 µL of a 1 × 106 cfu/mL)

Role of look-alikes in seed transmission of pathogenic strains

Xff: 7767-R SNES 6V13

Xap GL1: 6546-R V12V13

Xap GL2: 6988-R SNES 27Xap GL3: 6996-R SNES 6

V13

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0

2

4

6

8

10

Popu

latio

n si

zes

(Log

10 C

FU/g

of

seed

)Population sizes of mature seeds

Pathogenic strain alone

Non-pathogenic strain alone

Pathogenic strain in mix

Non-pathogenic strain in mix

aa

aa

a a aa

a a

a a a a

b

b b b b b b b b b

b

b b b

Pathogen alone

Look-alike alone

Pathogen in mix

Look-alike in mix

Detection threshold

7767-RSNES 6

7767-RV13

6546-RV13

6546-RV12

6988-RSNES 27

6996-RSNES 6

6996-RV13

Role of look-alikes in seed transmission of pathogenic strains

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0

2

4

6

8

10

Popu

latio

n si

zes

(Log

10 C

FU/g

of

seed

)Population sizes of mature seeds

Pathogenic strain alone

Non-pathogenic strain alone

Pathogenic strain in mix

Non-pathogenic strain in mix

Detection threshold

aa

aa

a a aa

a a

a a a a

b

b b b b b b b b b

b

b b b

Pathogen alone

Look-alike alone

Pathogen in mix

Look-alike in mix

Detection threshold

7767-RSNES 6

7767-RV13

6546-RV13

6546-RV12

6988-RSNES 27

6996-RSNES 6

6996-RV13

No transmission of look-alikesNo effect of look-alikes on pathogen transmission

Role of look-alikes in seed transmission of pathogenic strains

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Xylem colonization by look-alikes and pathogenic strains

Cataphyll: 1st leaf

1st trifoliate

0 1 and 2 jpi

7767-R SNES 6V13

6546-R V12V13

6988-R SNES 276996-R SNES 6

V13

Pathogen alone

Look-alike alone

Pathogen in mix

Look-alike in mix

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Popu

latio

n si

zes

(Log

10 C

FU/g

fres

hw

eigh

t)

7767-R / SNES6

01234567

Inoc Point > cata > cata

0 1 dpi 2 dpî

a a aab b bb

c cc

c

0

2

4

6

8

Inoc Point > cata > cata

0 1 dpi 2 dpî

a a aab b b b

c c cc

7767-R / V13

01234567

Inoc Point > cata > cata

0 1 dpi 2 dpî

a a aab b bb

c cc

c

6546-R / V13

012345678

Inoc Point > cata > cata

0 1 dpi 2 dpî

a a aab b bb

c cc

c

6546-R / V12

01234567

Inoc Point > cata > cata

0 1 dpi 2 dpî

a a aab b bb

c ccc

6996-R / V13

01234567

Inoc Point > cata > cata

0 1 dpi 2 dpî

a a aab b bb

c cc

c

6996-R / SNES6

01234567

Inoc Point > cata > cata

0 1 dpi 2 dpî

a a aab b bb

c c cc

6988-R / SNES27

No difference between pathogens and look-alikes

Pathogen alone

Look-alike alone

Pathogen in mix

Look-alike in mix

Xylem colonization by look-alikes and pathogenic strains

cataphyll

1st trifoliate

0 1 and 2 jpi

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Look-alikes and transmission to seed of CBB agents

Plant pathogenic MO

Pathogenic MO

PGPR?

Not possible to monitor transmission to seeds for look-alikesBut look-alikes are isolated from seeds

Do not seem to interfere with pathogen transmission to seedNot good candidates for biocontrol

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Role of look-alikes in transmission of Xff to bean seeds

Translocation of gfp-tagged strain of Xff to seeds using confocal scanning-laser microscopy

Efficiencies of transmissions of CBB agents from seeds to plantlets.

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Mother plantSeed

Localization of Xff during seed formation on bean plants

Xff gfp-tagged cell following spray inoculation of bean plants at flower bud stage

seed

counterpalisade

funicule

Tracheid bar

parenchyma

hilar fissure

28 dai

Transversal cut at the hile

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Mother plantSeed

Localization of Xff during seed formation on bean plants

Xff gfp-tagged cell following spray inoculation of bean plants at flower bud stage

seed

counterpalisade

funicule

Tracheid bar

parenchyma

hilar fissure

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Aperture in the counterpalisade of the hile

Tracheid bar

funicule

seed

Localization of Xff during seed formation on bean plants

Xff gfp-tagged cell following spray inoculation of bean plants at flower bud stage

Mother plant

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Role of look-alikes in transmission of Xff to bean seeds

Translocation of gfp-tagged strain of Xff to seeds using confocal scanning-laser microscopy

Efficiencies of transmissions of CBB agents from seeds to plantlets.

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4 days after sowing in germ boxes 7 days after sowing in soil

Spray-inoculation of R5-beans

Harvest of seeds 6 wk later

Transmission rates of seed borne bacteria under optimal conditions

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Transmission rates of seed borne bacteria under optimal conditions

Large range of Contamination Rates of seed lotsAnd of associated population sizes

Popu

latio

n siz

es o

n se

eds

(Log

cfu

/g o

f see

ds)

Contamination rates of seed lots

0

1

2

3

4

5

6

7

8

0 20 40 60 80 100 120

Results from 29 bean seed lots harvested from plants inoculated with CBB agents

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Transmission rates of seed borne bacteria under optimal conditions

0

0,5

1

1,5

2

2,5

0 5 10 15 20 25 30 35

Tran

smiss

ion

rate

s

6546-R7430

6936-R

6937-R

6938-R

Xap GL1

6988-RXap GL2

6996-RXap GL3

7112-RXav4834-R

7767-R

4884-R

Xff

SNES22-R

0

0,5

1

1,5

2

2,5

0 5 10 15 20 25 30

6546-R7430

6936-R

6937-R

6938-R

Xap GL1

6988-RXap GL2

6996-RXap GL3

7112-RXav4834-R

7767-R

4884-R

Xff

SNES22-R

Tran

smiss

ion

rate

s

TR 4: CR plantlet lots 4 dai/ CR seed lots TR 7: CR plantlet lots 7 dai/ CR seed lots

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Transmission rates of seed borne bacteria under optimal conditions

High TR from seeds to plantlets: 0.6 to 1.5 (2) for CBB agents

Transmission efficiency varies for a same strain (high variability for Xav strain CFBP 7112)

TR ~ 1 when analyzed 4 dai, more variable when determined 7 dai

0

0,5

1

1,5

2

2,5

0 5 10 15 20 25 30 35

Tran

smiss

ion

rate

s

6546-R7430

6936-R

6937-R

6938-R

Xap GL1

6988-RXap GL2

6996-RXap GL3

7112-RXav4834-R

7767-R

4884-R

Xff

SNES22-R

0

0,5

1

1,5

2

2,5

0 5 10 15 20 25 30

6546-R7430

6936-R

6937-R

6938-R

Xap GL1

6988-RXap GL2

6996-RXap GL3

7112-RXav4834-R

7767-R

4884-R

Xff

SNES22-R

Tran

smiss

ion

rate

s

TR 4: CR plantlet lots 4 dai/ CR seed lots TR 7: CR plantlet lots 7 dai/ CR seed lots

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Transmission rates of seed borne bacteria under optimal conditions

All seed contaminations lead to plantlet contamination if analyzed 4 daiContamination rates of plantlets lots are more or less predictable from mean population sizes in seedsPopulation threshold (1 × 103 cfu/g of seed) on seeds for an efficient contamination of plantlets (4 dai)

If analyses are made on leaves of 7 days-old plantlets, contaminations are highly variable and not predictable from populations sizes determined on seeds.

0

20

40

60

80

100

120

0 1 2 3 4 5 6 7 8

Population sizes on seeds (Log cfu/g of seeds)

Cont

amin

atio

n ra

tes o

f pla

ntes

0

20

40

60

80

100

120

0 1 2 3 4 5 6 7 8

Plantlets 4 d after imbibition Leaves of 7 days-old plants

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How do look-alikes transmit to seeds?Are they stopped by plant defenses in flower buds?

Bean bud inoculation lead to vascular transmission of Xff to seeds, and not only to ingress via the micropyle.

Analysis of plantlets 4 dai in germination boxes allows a good estimation of seed contaminations,BUT tend to over-estimate efficient transmission to plants as determined by contamination of the cataphylls

Conclusions

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Acknowledgments

Armelle DarrasseJean-François Guimbaud

Anne Préveaux

INEM

Thank you for your attention