Effects of Genotype and Environment on the Plant Ionome · Phylogenetics is the study of the...
Transcript of Effects of Genotype and Environment on the Plant Ionome · Phylogenetics is the study of the...
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Effects of Genotype and Environment on the Plant Ionome
Philip J. White
Martin R. Broadley
and many others
FertBio2014 18th September 2014
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Carbon
Hydrogen
Oxygen
(Silicon)
(Sodium)
Nitrogen
Potassium
Calcium
Phosphorus
Magnesium
Sulphur
Zinc
Nickel
Manganese
Molybdenum
Chlorine
Boron
Iron
Copper
(Cobalt, Iodine, Vanadium, Selenium)
98.5 %
...and every other element in the periodic table available in the environment
Ionomics is the Study of the Elemental Composition of Plants
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Phylogenetics Genetics at a Higher Level of Classification
Phylogenetics is the study of the relationships among
groups of organisms (e.g. families, species,
populations) based on DNA sequencing.
The result of phylogenetic studies are hypotheses
about the evolutionary history of taxonomic groups.
Angiosperms – flowering plants.
A definition of phylogenetics and its utility
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Phylogenetics Angiosperm Phylogeny
The Angiosperm Phylogeny Group (1998, 2003, 2009)
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Fagales Cucurbitales Rosales Fabales Oxalidales Malpighiales Celastrales Zygophyllales Myrtales Sapindales Malvales Brassicales Crossosomatales Geraniales Vitaceae Saxifragales Berberidopsidales Dipsacales Apiales Asterales Aquifoliales Lamiales Solanales Gentianales Garryales Cornales Ericales Caryophyllales Dilleniaceae Santanales Gunnerales Trochodendraceae Buxaceae/Didymeleaceae Sabiaceae Proteales Ranunculales Ceratophyllales Winterales Magnoliales Laurales Piperales monocots Chloranthales Illiciaceae Schisandraceae Austrobaileyaceae Nymphaceae Amborellaceae
Angiosperms (flowering plants)
250,000 species
462 families
47 orders eudicots
basal angiosperms
and magnoliids
APG II (2003)
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monocots -
commelinoids
Grass
Bamboo Banana
Costus
Bromeliad
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monocots -
non-commelinoid
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Caryophyllales
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asterids
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rosids
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Plant Species Differ in Their Ionome
Fertiliser Use Efficiency
Functional Foods
Safer Crops
Contaminant Transfer
Tolerant Crops
Phytoremediation
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Evolution of the Angiosperm Ionome Selected Examples
(1) Calcium, Strontium & Magnesium
(2) Silicon
(3) Sodium (in nonsaline environments)
(4) Rothamsted Park Grass Experiment
FertBio2014, Araxá, Brazil, 18th September 2014
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Evolution of the Angiosperm Ionome Data Sources
Meta-analysis of literature data
(182 comparative studies
in 40 papers)
Meta-Analyses of
Comparative Studies
Insights to the Angiosperm Ionome – Sources of Data
Experiments under
Controlled Conditions Botanical Surveys
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Broadley et al. (2003) J. Exp. Bot. 54, 1431-1446
Broadley et al. (2004) J. Exp. Bot. 55, 321-336
A Botanical Journey Through The Periodic Table
Group II Elements
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[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
Hydroponics Sampled from the field
Magnesium : Calcium Ratios in Shoot Tissues
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[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
All other taxa
Caryophyllales (e.g. sugar beet, carnation)
Hydroponics Sampled from the field
Magnesium : Calcium Ratios in Shoot Tissues
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Shoot Mg / Ca Ratios
of Angiosperm Orders
Fagales Cucurbitales Rosales Fabales Oxalidales (n=1) Malpighiales Celastrales Zygophyllales Myrtales Sapindales Malvales Brassicales Crossosomatales Geraniales Vitaceae Saxifragales Berberidopsidales Dipsacales Apiales Asterales Aquifoliales Lamiales Solanales Gentianales Garryales Cornales Ericales Caryophyllales (n=51) Dilleniaceae Santanales Gunnerales Trochodendraceae Buxaceae/Didymeleaceae Sabiaceae Proteales Ranunculales Ceratophyllales Winterales Magnoliales Laurales Piperales monocots Chloranthales Illiciaceae Schisandraceae Austrobaileyaceae Nymphaceae Amborellaceae
> 200 species
grown hydroponically
high
low
0.8
0
mean
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Shoot Mg / Ca Ratios in the Caryophyllales
Plumbaginaceae
Polygonaceae
Caryophyllaceae
Amaranthaceae
Aizoaceae
Phytolaccaceae
Nyctaginaceae
Cactaceae
Portulacaceae
high
low
1.2
0
mean
51 species
grown hydroponically
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Ecological Implications - Serpentine Flora
Proctor J (1999) Toxins, nutrient shortages and droughts: the serpentine challenge.
Trends in Ecology and Evolution, 14, 334-335
Edmonstons Chickweed - Cerastium nigrescens (Caryophyllaceae).
World distribution restricted to the serpentine debris on Unst
name is derived from the mineral serpentine
((Mg,Fe)3Si2O5(OH)4)
high Mg and Fe; low Ca
high Ni, Cr and Co; low organic matter; little water; low N, P and K
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[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
All other taxa
Caryophyllales (e.g. sugar beet, carnation)
Hydroponics Sampled from the field
Magnesium : Calcium Ratios in Shoot Tissues
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[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
All other taxa
Caryophyllales (e.g. sugar beet, carnation)
Poales (e.g. the grass / cereal family, Poaceae)
Hydroponics Sampled from the field
Magnesium : Calcium Ratios in Shoot Tissues
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[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
[Ca]shoot (%)
0 1 2 3 4 5
[Mg
] sh
oo
t (%
)
0.0
0.5
1.0
1.5
2.0
All other taxa
Caryophyllales (e.g. sugar beet, carnation)
Poales (e.g. the grass / cereal family, Poaceae)
Asterales (e.g. the daisy / sunflower family Asteraceae)
Hydroponics Sampled from the field
Magnesium : Calcium Ratios in Shoot Tissues
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Fagales Cucurbitales Rosales Fabales Oxalidales Malpighiales Celastrales Zygophyllales Myrtales Sapindales Malvales Brassicales Geraniales Saxifragales Dipsacales Apiales Asterales Lamiales Solanales Gentianales Ericales Caryophyllales Proteales Ranunculales Magnoliales Laurales Piperales monocots Chloranthales Illiciaceae Schisandraceae Austrobaileyaceae Nymphaceae Amborellaceae
Eudicots > monocots
Shoot Ca Concentrations
of Angiosperm Orders
high
low
3 %
0
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commelinoid
monocots
non-
commelinoid
monocots
Zingiberales
Commelinales
Poales
Arecales
Asparagales
Dioscoreales
Alismatales
Shoot Calcium Concentrations of Monocot Orders
non-commelinoid monocots > commelinoid monocots (Poales, Arecales)
shoot Ca concentrations of different monocot orders differ
high
low
1.5%
0
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Plant Calcium - Dietary Consequences
Thacher (2006) Ann. Trop. Paediatrics 26, 1-16
White & Broadley (2009) New Phytol. 182, 49-84
calcium deficiency disorders arise
when populations change from
bean-rich to cereal-rich diets
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Strontium : Calcium Ratios In Shoots of 44 Plant Species
0
10
20
30
40
50
60
70
80
90
100
0 10 20 30 40
Calcium content (mg/g)
Str
on
tiu
m c
on
ten
t (µ
Ci/
g)
Poales
Andersen AJ (1967) Risö Report 170
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Phylogenetic Variation in Shoot Mineral Concentrations
Broadley et al. (2004) J. Exp. Bot. 55, 321-336
Proportion of genetic variation
Ca Mg Sr
64 65 76
36 35 24
order and above (%)
within order (%)
Ancient evolutionary origin of variation in Ca, Mg & Sr concentrations
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Silicon
Hodson et al. (2005) Ann. Bot. 96, 1027-1046
A Botanical Journey Through The Periodic Table
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Silicon in Plants
Hodson et al. (2005) Ann. Bot. 96, 1027-1046
0
10
20
30
40
50
60
70
0 2 4 6 8 10 12 14
Non-commelinoid monocots (onion)
Asterids (daisy)
% Si in leaf tissue
% f
req
uen
cy o
f all o
bserv
ati
on
s
20
0
60
40
2 0 6 4 10 8 12 14
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0
10
20
30
40
50
60
70
0 2 4 6 8 10 12 14
Non-commelinoid monocots (onion)
Asterids (daisy)
% Si in leaf tissue
% f
req
uen
cy o
f all o
bserv
ati
on
s
Commelinoid monocots (grass)
2 0 6 4 10 8 12 14
20
0
60
40
Silicon in Plants
Hodson et al. (2005) Ann. Bot. 96, 1027-1046
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Silicon in Plants
Proportion of genetic variation
Ca Mg Sr Si
64 65 76 80
36 35 24 20
order and above (%)
within order (%)
Ancient evolutionary origin of variation in Ca, Mg, Sr & Si concentrations
Ca, Mg, Sr : eudicots ≥ non-commelinoid monocots > commelinoid monocots
Si : eudicots ≤ non-commelinoid monocots < commelinoid monocots
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Watanabe et al. (2007) New Phytol. 174, 516-523
I II III IV V VI VII VIII
H He
Li Be B C N O F Ne ancient
Na Mg Al Si P S Cl Ar
K Ca Ga Ge As Se Br Kr
Rb Sr In Sn Sb Te I Xe
Cs Ba Tl Pb Bi Po At Rn recent
Variation in Ionomes of Angiosperm Species
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Distribution of Leaf Sodium Concentrations Among Angiosperm Species
Evolution of Sodium Accumulation in the Caryophyllales
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Distribution of Leaf Sodium Concentrations Among Angiosperm Species
Evolution of Sodium Accumulation in the Caryophyllales
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Shoot Sodium Concentrations
of Angiosperm Orders
Fagales Cucurbitales Rosales Fabales Oxalidales Malpighiales Celastrales Zygophyllales Myrtales Sapindales Malvales Brassicales Crossosomatales Geraniales Vitaceae Saxifragales Berberidopsidales Dipsacales Apiales Asterales Aquifoliales Lamiales Solanales Gentianales Garryales Cornales Ericales Caryophyllales (n=63) Dilleniaceae Santanales Gunnerales Trochodendraceae Buxaceae/Didymeleaceae Sabiaceae Proteales Ranunculales Ceratophyllales Winterales Magnoliales Laurales Piperales Monocots (8 orders) Chloranthales Illiciaceae Schisandraceae Austrobaileyaceae Nymphaceae Amborellaceae
311 species
grown hydroponically
high
low
0.5
0
mean
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Phylogenetic Effects on the Plant Ionome
Evolution of Sodium Accumulation in the Caryophyllales
<0.1
0.1-0.5
0.5-1.0
1.0-1.5
1.5-2.0
>2.0
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Phylogenetic and Environmental Effects on the Plant Ionome
Park Grass, Rothamsted
1856-2014
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Botanical Composition of Park Grass Plots (Crawley et al., 1991-2000)
Crawley et al. (2005) American Naturalist 165, 179-192
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Phylogenetic and Environmental Effects on the Plant Ionome
White et al. (2012) New Phytologist 196, 101-109
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Discriminant Score 1
-6 -4 -2 0 2 4 6 8
Dis
cri
min
an
t S
co
re 2
-8
-6
-4
-2
0
2
4
White et al. (2012) New Phytologist 196, 101-109
Plant Species Differ in Their Ionome
Poaceae
Polygonaceae
Plantaginaceae
Asteraceae
Fabaceae
Ranunculaceae
Apiaceae
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Shoot Ca (mg g-1
DW)
0 10 20 30 40
Sh
oo
t M
g (
mg
g-1
DW
)
0
2
4
6
8
10
White et al. (2012) New Phytologist 196, 101-109
Calcium : Magnesium Ratios
Poaceae
Polygonaceae
(Caryophyllales)
other Angiosperm families
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Phylogenetic and Environmental Effects on the Plant Ionome
White et al. (2012) New Phytologist 196, 101-109
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Evolution of the Angiosperm Ionome
Commelinoid monocots - low Calcium, Magnesium, Strontium
Commelinoid monocots - high Silicon
Caryophyllales - high Magnesium / Calcium Ratios
Some Caryophyllales (hyper)accumulate Sodium
Plant Species Differ in their Ionome
Differences Attributed to
Ancient and Recent Evolutionary Events
(Phylo)genetic Variation exceeds Environmental Variation
For some Elements
FertBio2014, Araxá, Brazil, 18th September 2014
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Evolution of the Angiosperm Ionome
Commelinoid monocots - low Calcium, Magnesium, Strontium
Commelinoid monocots - high Silicon
Caryophyllales - high Magnesium / Calcium Ratios
Some Caryophyllales (hyper)accumulate Sodium
Plant Species Differ in their Ionome
Differences Attributed to
Ancient and Recent Evolutionary Events
(Phylo)genetic Variation exceeds Environmental Variation
For some Elements
FertBio2014, Araxá, Brazil, 18th September 2014