Google Summer of Code 2012

Sabina Sara PfisterJason MontojoJohn A. Brown

DynNetworkDynamic Networks in Cytoscape 3.0

http://code.google.com/p/dynnetwork/

DynNetwork at a glance(or from the user point of view)

Cytoscape Dynamic Network Panel

Time slider& Player

Videorecorder

Visualizationoptions

ApplyVizMap

● Load dynamic data (dynamic XGMML)

● Visualize dynamic data

● Apply Visual Mappings

● Dynamic layout (incremental Kamada Kawai and Prefuse layout)

● Record video

DynNetwork backstage(or from the developer point of view)

DynNetwork backstage(or from the developer point of view)

DynNetwork backstage(or from the developer point of view)

Zubler et al, 2011

Case study: neural networks

The future is moving!

Dynamic XGMML Specification

Profiling

DynNetwork has been tested on network up to 500 nodes, 40% edges.