DRUG DESIGN AND DEVELOPMENT Stages 1) Identify target disease 2) Identify drug target 3) Establish...
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Transcript of DRUG DESIGN AND DEVELOPMENT Stages 1) Identify target disease 2) Identify drug target 3) Establish...
DRUG DESIGN AND DEVELOPMENTDRUG DESIGN AND DEVELOPMENT
StagesStages 1) Identify target disease 2) Identify drug target 3) Establish testing procedures 4) Find a lead compound 5) Structure Activity Relationships (SAR) 6) Identify a pharmacophore 7) Drug design- optimising target interactions 8) Drug design - optimising pharmacokinetic properties 9) Preclinical trials10) Chemical development and process development11) Patenting and regulatory affairs12) Clinical trials
Note:Note: Stages 9-11 are usually carried out in parallelStages 9-11 are usually carried out in parallel
Drug metabolismIdentification of drug metabolites in test animals Properties of drug metabolites
ToxicologyIn vivo and in vitro tests for acute and chronic
toxicity
PharmacologySelectivity of action at drug target
FormulationStability testsMethods of delivery
PRECLINICAL TRIALSPRECLINICAL TRIALS
DefinitionDevelopment of a synthesis suitable for large scale production up to 100kg
CHEMICAL DEVELOPMENTCHEMICAL DEVELOPMENT
Priorities •To optimise the final synthetic step and the purification procedures •To define the product specifications •To produce a product that consistently passes the purity specifications •To produce a high quality product in high yield using a synthesis that is cheap and efficient. •To produce a synthesis that is safe and environmentally friendly with a minimum number of steps
PhasesPhases
•Synthesis of 1 kg for initial preclinical testing (often a scale up of the original synthesis) •Synthesis of 10 kg for toxicological studies, formulation and initial clinical trials•Synthesis of 100 kg for clinical trials
Notes•Chemical development is more than just scaling up the original synthesis•Different reaction conditions or synthetic routes often required•Time period can be up to 5 years•Need to balance long term aims of developing a large scale synthesis versus short term need for batches for preclinical trials•The product produced by the fully developed route must meet the same specifications as defined at phase 1
CHEMICAL DEVELOPMENTCHEMICAL DEVELOPMENT
The initial synthesis was designed in the research lab
Characteristics•Designed to synthesise as many different compounds as quickly as possible •Designed to identify a range of active compounds•Yield and cost are low priorities•Usually done on small scale
Likely problems related to the original synthesis•The use of hazardous starting materials and reagents •Experimental procedures which are impractical on large scale•The number of reaction steps involved•Yield and cost
Scale up •Original synthesis is often scaled up for the first 1 kg of product, but is then modified or altered completely for larger quantities
THE INITIAL SYNTHESISTHE INITIAL SYNTHESIS
The initial synthesis of fexofenadine (anti-asthmatic)The initial synthesis of fexofenadine (anti-asthmatic)
•Fexofenadine synthesised by the same route used for terfenadine•Unsatisfactory since the Friedel Crafts reaction gives the meta isomer as well•Requires chromatography to remove the meta isomer
THE INITIAL SYNTHESISTHE INITIAL SYNTHESIS
C
R
Me
MeC
R2N
O
Reduction NHO
PhPh
HO
C
R
Me
Me
R= Me; TerfenadineR=CO2H; Fexofenadine
C
R
Me
Me
CO
Cl
ClC
R
Me
MeC
Cl
O
Friedel CraftsAcylation
R2NH
Revised synthesis of fexofenadineRevised synthesis of fexofenadine
•More practical and efficient synthesis using easily available starting materials•No ‘awkward’ isomers are formed•No chromatography required for purification
CCO2Et
Me
Me
Me
Oxidation
CCO2Et
Me
OHC
Me
O
O
MgBr
NHHO
Ph
Ph1)
2) NaBH4
NHO
PhPh
HO
C
CO2Et
Me
Me
CCO2Et
MeMe
OH
O
O
CO2Et
MeMe
O
HO
Esterhydrolysis
Fexofenadine
Amberlyst
THE INITIAL SYNTHESISTHE INITIAL SYNTHESIS
Aims To optimise the yield and purity of product from each reaction
Notes•Maximum yield does not necessarily mean maximum purity•May need to accept less than the maximum yield to achieve an acceptable purity •Need to consider cost and safety
FactorsTemperature, reaction time, stirring rate, pH, pressure, catalysts, order and rate of addition of reactants and reagents, purification procedure.
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
•Optimum temperature is the temperature at which the rate of reaction is maximised with a minimum of side reactions•Increasing the temperature increases the reaction rate•Increasing the temperature may increase side reactions and increase impurities•Compromise is often required
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
TemperatureTemperature
•Increased pressure (> 5 kilobar) accelerates some reactions •Involves reactions where the transition state occupies a smaller volume than the starting materials• Useful if increased heating causes side reactions
Examples of reactions accelerated by pressure Esterifications; amine quaternisation; ester hydrolysis; Claisen and Cope rearrangements; nucleophilic substitutions; Diels Alder reactions
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
ExampleEsterification of acetic acid with ethanol - proceeds 5 times faster at 2 kbar than at 1 atm.- proceeds 26 times faster at 4 kbar
PressurePressure
Br
OO
PPh3
PPh3
OO
benzene-toluene20oC / 15,000atm
•Good yield at 20oC and 15 kbar•No reaction at 20oC and 1 atmosphere•Decomposition at 80oC and 1 atmosphere
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
Example 1
Example 2•Hydrolysis of chiral esters using base with heating may cause racemisation•Can be carried out at room temperature with pressure instead
PressurePressure
•Optimum reaction time is the time required to get the best yield consistent with high purity. •Monitor reactions to find the optimum time•Use TLC, gas chromatography, IR, NMR, HPLC•If reaction goes to completion, optimum time is often the time required to reach completion•If reaction reaches equilibrium, optimum time is often the time required to reach equilibrium•Optimum time may not be the same as the time to reach completion or equilibrium if side reactions take place•Excess reaction times increase the chances of side reactions and the formation of impurities.•Reaction times greater than 15 hr should be avoided (costly at production level)
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONSReaction timeReaction time
•Important to outcome, yield and purity•Should normally be capable of dissolving reactants and reagents•Insolubility of a product in solvent may improve yields by shifting an equilibrium reaction to its products •Insolubility may be a problem with catalysts
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
C
HN
NH
O
O
OO
O
OH
H
H H2 Pd/C
EtOH/H2O
H3NNH
O
O
O
OH
H
H
•Poor yield in ethanol - product precipitates and coats the catalyst•Poor yield in water - reactant poorly soluble•Quantitative yield in ethanol-water; 1:1
Example
SolventSolvent
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
•Should have a suitable boiling point if one wishes to heat the reaction at a constant temperature (heating to reflux)
•Should be compatible with the reaction being carried out
•Solvents are classed as polar (EtOH, H2O, acetone) or nonpolar (toluene, chloroform)
•Polar solvents are classed as protic (EtOH, H2O) or aprotic (DMF, DMSO)
•Protic solvents are capable of H-bonding
•The polarity and the H-bonding ability of the solvent may affect the reaction
Solvent
•Solvent DMSO; reaction time 1-2 hours•Solvent aq. ethanol; reaction time 1-4 days•DMSO solvates cations but leaves anions relatively unsolvated•Nucleophile is more reactive in DMSO
R
Cl
R
CNNaCNDMSO
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
ExampleExample
•Protic solvents give higher rates for SN1 reactions but not for SN2 reactions - they aid departure of anion in the rate determining step•Dipolar aprotic solvents (DMSO) are better for SN2 reactions
SN2 reaction
SolventSolvent
•High concentration favors increased reaction rate but may increase chance of side reactions
•Low concentrations are useful for exothermic reactions (solvent acts as a ‘heat sink’)
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONSConcentrationConcentration
•Increase rate at which reactions reach equilibrium•Classed as heterogeneous or homogeneous•Choice of catalyst can influence type of product obtained and yield
R C C R R C C R
H
H
H
H
H2 Pd/C
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
ExampleExample
R C C R C C
R
H
R
H
H2 Pd/CaCO 3
Poisonedcatalyst
CatalystsCatalysts
R Cl RC
O
R
CR
O
Lewis acid
Vary Lewis acid catalysts (e.g. AlCl3 or ZnCl2) to optimize yield and purity
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
ExampleExample
CatalystsCatalysts
•Shifts equilibrium to products if reaction is thermodynamically controlled•Excess reactant must be cheap, readily available and easily separated from product•May also affect outcome of reaction
Ph O
O
H2NNH2
HN
NH2C
O
Ph
O
+ HN
NH
C
O
C
O
Excess diamine is used to increase the proportion of mono-acylated product
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
ExampleExample
Excess reactantsExcess reactants
•Removing a product shifts the equilibrium to products if the reaction is in equilibrium•Can remove a product by precipitation, distillation or crystallisation
Removing water by distillation shifts equilibrium to right
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
R R
O
HOOH
R R
OO+
Ptsa catalyst
+ H2O
ExampleExample
Removing a productRemoving a product
•Adding one reactant or reagent slowly to another helps to control the temperature of fast exothermic reactions
•Stirring rates may be crucial to prevent localized regions of high concentration
•Dilution of reactant or reagent in solvent before addition helps to prevent localized areas of high concentration
•Order of addition may influence the outcome and yield
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONSMethods of additionMethods of addition
•Impurity is formed when butyl lithium is added to the phosphonate•Phosphonate anion reacts with unreacted phosphonate to form impurity•No impurity is formed if the phosphonate is added to butyl lithium
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
N
Ar
P
O
OMe
OMeN
Ar
R N
Ar
R
1) nBuLi2) RCHO
impurity
+
ExampleExample
Methods of additionMethods of addition
Less reactive reagents may affect the outcome of the reaction
•A 1:1 mixture of mono and diacylated products is obtained even when benzyl chloride is added to the diamine•Using less reactive benzoic anhydride gives a ratio of mono to diacylated product of 1.86:0.14
OPTIMIZATION OF REACTIONSOPTIMIZATION OF REACTIONS
Cl
O
H2NNH2
HN
NH2C
O
+ HN
NH
C
O
C
O
ExampleExample
Reactivity of reagents and reactantsReactivity of reagents and reactants
Priorities Cost, safety and practicality
SCALING UP A REACTIONSCALING UP A REACTION
Factors to consider Reagents, reactants and intermediates, solvents, side products, temperature, promoters, procedures, physical parameters
•Reagents used in the initial synthesis are often unsuitable due to cost or hazards. •Hazardous by products may be formed from certain reagents (e.g. mercuric acetate from mercury)•Reagents may be unsuitable on environmental grounds (e.g. smell)•Reagents may be unsuitable to handle on large scale (e.g. hygroscopic or lachrymatory compounds)
H
RR
H H
RR
H
Zn/CuEt2OCH2I2
ExampleExample
•Zn/Cu amalgam is too expensive for scale up •Replace with zinc powder
SCALING UP A REACTIONSCALING UP A REACTION ReagentsReagents
•Above reactions should be avoided for scale up•Palladium chloride and pyridinium chlorochromate are both carcinogenic•Synthetic route would be rejected by regulatory authorities if carcinogenic reagents are used near the end of the synthetic route
ExamplesExamples
N
O
PdCl2
X
N
X
R
OH
N
H
CrO3Cl
R C
O
H
SCALING UP A REACTIONSCALING UP A REACTION ReagentsReagents
•m-Chloroperbenzoic acid is preferred over cheaper peroxide reagents m-Chloroperbenzoic acid is preferred over cheaper peroxide reagents •Mcpba has a higher decomposition temperature Mcpba has a higher decomposition temperature •Safer to useSafer to use
Choice may need to be made between cost and safety
SCALING UP A REACTIONSCALING UP A REACTION
CCH3
OO
OH
O
Cl CO
O
CH3
ExampleExample
ReagentsReagents
•Starting materials should be cheap and readily available
•Hazards of starting materials and intermediates must be considered (e.g. diazonium salts are explosive and best avoided)
•May have to alter synthesis to avoid hazardous intermediates
SCALING UP A REACTIONSCALING UP A REACTIONReactants and intermediatesReactants and intermediates
•Solvents must not be excessively costly, flammable or toxic
•Unsuitable solvents include diethyl ether, chloroform, dioxane, benzene, and hexamethylphosphoric triamide
•Concentrations used in the research lab are relatively dilute
•Concentration is normally increased during scale up to avoid large volumes of solvent (solvent:solute ratio 5:1 or less)
•Increased concentrations means less solvent, less hazards, greater economy and increased reaction rates
•Changing solvent can affect outcome or yield
•Not feasible to purify solvents on production scale
SCALING UP A REACTIONSCALING UP A REACTIONSolventsSolvents
SCALING UP A REACTIONSCALING UP A REACTION
•Ignition temperature - temperature at which solvent ignites
•Flash point - temperature at which vapors of the solvent ignite in the presence of an ignition source (spark or flame)
•Vapor pressure - measure of a solvent’s volatility
•Vapor density - measure of whether vapors of the solvent rise or creep along the floor
SolventsSolvents
Solvent properties to be considered
SCALING UP A REACTIONSCALING UP A REACTION
•Solvents which are flammable at a low solvent/air mixture and over a wide range of solvent/air mixtures
•Solvents with a flash point less than -18oC (e.g. diethyl ether and carbon disulfide)
•Diethyl ether has a flammable solvent/air range of 2-36%, is heavier than air and can creep along plant floors to ignite on hot pipes
Hazardous solvents
SolventsSolvents
SCALING UP A REACTIONSCALING UP A REACTION
•Dimethoxyethane for diethyl ether (less flammable, higher BP and higher heat capacity)
•t-Butyl methyl ether for diethyl ether (cheaper, safer and does not form peroxides)
•Heptane for pentane and hexane (less flammable)
•Ethyl acetate for chlorinated solvents (less toxic)
•Toluene for benzene (less carcinogenic)
•Xylene for benzene (less carcinogenic)
•Tetrahydrofuran for dioxane (less carcinogenic)
Alternative solvents for common research solvents
SolventsSolvents
•Reactions producing hazardous side products are unsuitable for scale up.•May need to consider different reagents
•Preparation of a phosphonate produces methyl chloride •Methyl chloride is gaseous, toxic and an alkylating agent. •Trimethyl phosphite stinks•Sodium dimethyl phosphonate results in the formation of non-toxic NaCl
SCALING UP A REACTIONSCALING UP A REACTIONSide productsSide products
R
Cl
R
P
O
OMe
OMe
P(OMe)3+ CH3Cl
R
Cl
R
P
O
OMe
OMe
NaH
HPO(OMe)2
+ NaCl
ExampleExample
Temperature
Must be practical for reaction vessels in the production plant
SCALING UP A REACTIONSCALING UP A REACTION
•Certain chemicals can sometimes be added at a catalytic level to promote reactions on large scale•May remove impurities in commercial solvents and reagents
SCALING UP A REACTIONSCALING UP A REACTION
Example 1•RedAl used as a promoter in cyclopropanation reaction with zinc•Removes zinc oxides from the surface of the zinc•Removes water from the solvent•Removes peroxides from the solvent
Example 2•Methyl magnesium iodide is used as a promoter for the Grignard reaction
PromotersPromoters
Some experimental procedures carried out on small scale may be impractical on large scale
Examples:•Scraping solids out of flasks•Concentrating solutions to dryness•Rotary evaporators•Vacuum ovens to dry oils•Chromatography for purification•Drying agents (e.g. sodium sulfate)•Addition of reagents within short time spans•Use of separating funnels for washing and extracting
SCALING UP A REACTIONSCALING UP A REACTIONExperimental proceduresExperimental procedures
•Drying organic solutions - add a suitable solvent and azeotrope off the water- extract with brine
•Concentrating solutions- carried out under normal distillation conditions
•Purification- crystallization preferred
•Washing and extracting solutions- stirring solvent phases in large reaction vessels- countercurrent extraction
SCALING UP A REACTIONSCALING UP A REACTION
Some alternative procedures suitable for large scale
Experimental proceduresExperimental procedures
May play an important role in the outcome and yieldParameters involved
- stirring efficiency- surface area to volume ratio of reactor vessel- rate of heat transfer- temperature gradient between the center of the reaction
and the walls
SCALING UP A REACTIONSCALING UP A REACTION Physical parametersPhysical parameters
DefinitionDevelopment of the overall synthetic route to make it suitable for the production site, such that it can produce batches of product in ton quantities with consistent yield and purity
Priorities•Minimizing the number of reaction steps•The use of convergent synthesis•Minimizing the number of operations•Integration of the overall reaction scheme•Safety - chemical hazards•Safety - reaction hazards•Minimizing the number of purification steps•Environmental issues•Cost
PROCESS DEVELOPMENTPROCESS DEVELOPMENT
Number of reaction steps
•Minimizing the number of reaction steps may increase the overall yield
•Requires a good understanding of synthetic organic chemistry
PROCESS DEVELOPMENTPROCESS DEVELOPMENT
•Product synthesised in two halves then linked•Preferable to linear synthesis•Higher yields
R S T U V
M N O P Q
K
L
CONVERGENT SYNTHESIS
A B C D E F G H I J K
LINEAR SYNTHESIS
Overall yield =10.7% assuming an 80% yield per reaction
Overall yield = 26.2% from L assuming an 80% yield per reaction Overall yield from R = 32.8%
PROCESS DEVELOPMENTPROCESS DEVELOPMENTConvergent synthesesConvergent syntheses
•Minimize the number of operations to increase the overall yield•Avoid isolation and purification of the intermediates•Keep intermediates in solution for transfer from one reaction vessel to another•Use a solvent which is common to a series of reactions in the process
PROCESS DEVELOPMENTPROCESS DEVELOPMENT
•Alkyl halide is not isolated•Transferred in solution to the next reaction vessel for the Wittig reaction
Number of operationsNumber of operations
Alcohol Alkyl halide Wittig reagentSOCl2 PPh3
Example
•Assess the potential hazards of all chemicals, solvents, intermediates and residues in the process.
•Introduce proper monitoring and controls to minimize the risks
PROCESS DEVELOPMENTPROCESS DEVELOPMENTSafety - chemical hazardsSafety - chemical hazards
Toxicity •Compounds must not have an LD50 less than 100mg/kg (teaspoon)
Flammability •Avoid high risk solvents. •Medium risk solvents require precautions to avoid static electricity
Explosiveness •Dust explosion test - determines whether a spark ignites a dust cloud of the compound•Hammer test - determines whether dropping a weight on the compound produces sound or light
Thermal instability •Reaction process must not use temperatures higher than decomposition temperatures
PROCESS DEVELOPMENTPROCESS DEVELOPMENTMain hazardsMain hazards
•Assess the potential hazards of all reactions.
•Carefully monitor any exothermic reactions.
•Control exothermic reactions by cooling and/or the rate at which reactants are added
•The rate of stirring can be crucial and must be monitored
•Autocatalytic reactions are potentially dangerous
PROCESS DEVELOPMENTPROCESS DEVELOPMENTSafety - reaction hazardsSafety - reaction hazards
•Keep the number of purifications to a minimum to enhance the overall yield
•Chromatography is often impractical
•Ideally, purification is carried out by crystallizing the final product of the process
•Crystallization conditions must be controlled to ensure consistent purity, crystal form and size
•Crystallization conditions must be monitored for cooling rate and stirring rate
•Crystals which are too large may trap solvent
•Crystals which are too fine may clog up filters
•Hot filtrations prior to crystallization must be done at least 15oC above the crystallization temperature
PROCESS DEVELOPMENTPROCESS DEVELOPMENT PurificationsPurifications
•Chemicals should be disposed of safely or recycled
•Solvents should be recycled and re-used
•Avoid mixed solvents - difficult to recycle
•Avoid solvents with low BP’s to avoid escape into the atmosphere
•Water is the preferred solvent
•Spent reagents should be made safe before disposal
•Use catalysts whenever relevant
•Use ‘clean’ technology whenever possible (e.g. electrochemistry, photochemistry, ultrasound, microwaves)
PROCESS DEVELOPMENTPROCESS DEVELOPMENT Environmental issuesEnvironmental issues
•Keep cost to a minimum
•Maximize the overall yield
•Minimize the cost of raw materials
•Minimize the cost of labor and overhead by producing large batches on each run
PROCESS DEVELOPMENTPROCESS DEVELOPMENT CostCost
Definition•Specifications define a product’s properties and purity•All batches must pass the predetermined specification limits
Troubleshooting •Necessary if any batches fail the specifications•Identify any impurities present and their source•Identify methods of removing impurities or preventing their formation
Sources of Impurities•Impure reagents and reactants•Reaction conditions•Order of reagent addition•Troublesome by products•The synthetic route
SPECIFICATIONSSPECIFICATIONS
•Includes MP, color of solution, particle size, polymorphism, pH, chemical and stereochemical purity.
•Impurities present are defined and quantified
•Residual solvents present are defined and quantified
•Acceptable limits of impurities and solvents are defined
•Acceptable limits are dependent on toxicity (e.g. ethanol 2%, methanol 0.05%)
•Carcinogenic impurities must be absent
•Carcinogenic compounds must not be used in the final stage of synthesis
SPECIFICATIONSSPECIFICATIONSProperties and purityProperties and purity
•Isolate, purify and identify all impurities
•Methods of analysis include HPLC, NMR spectroscopy, and mass spectrometry
•Identify the source of any impurity
•Alter the purification at the final stage, the reaction concerned or the reaction conditions
SPECIFICATIONSSPECIFICATIONS ImpuritiesImpurities
•Introduce a purification to remove any impurities at the end of the reaction sequence or after the offending reaction
•Methods of purification Crystallisation
Distillation Precipitation of impurity from solution Precipitation of product from solution
SPECIFICATIONSSPECIFICATIONSPurificationsPurifications
•Commercially available reagents or reactants contain impurities
•Impurities introduced early on in the synthetic route may survive the synthetic route and contaminate the product
•An impurity at an early stage of the synthetic route may undergo the same reactions as the starting material and contaminate the final product
SPECIFICATIONSSPECIFICATIONSImpure reagents/reactantsImpure reagents/reactants
SPECIFICATIONSSPECIFICATIONS
Synthesis of fluvostatinSynthesis of fluvostatin
ExampleExample
F
Cl
O
Cl
AlCl3F
O
Cl
a) PhNHCH(CH3)2b) ZnCl2
N
H3CCH3
F
PhMeN
H
O
POCl3CH3CN
N
Ar
H3CCH3
O
HtBuOAcAc/THFnBuLi/hexaneNaH
N
Ar
H3CCH3
OH O tBu
OO
N
Ar
H3CCH3
OH O tBu
OHO
N
Ar
H3CCH3
OH O Na
OHO
Fluvostatin
NaOHEtOHH2O
a) NaBH4Et2BOCH3THF/MeOHb) H2O2
SPECIFICATIONSSPECIFICATIONS
N
Ar
H3CCH3
OH O Na
OHO
Fluvostatin
NH
NHCH2CH3
N-Ethylaniline
Impurity
N
Ar
H3C
OH O Na
OH
O
N-Ethyl analogue of fluvostatin
Impurity
•Vary the reaction conditions to minimize any impurities(e.g. solvent, catalyst, ratio of reactants and reagents)
•Consider reaction kinetics and thermodynamicsHeating favors the thermodynamic product Rapid addition of reactant favors the kinetic product
•Consider sensitivity of a reagent to air and to oxidationN-Butyllithium oxidizes in air to lithium butoxideBenzaldehyde oxidizes to benzoic acidConsider using fresh reagents or a nitrogen atmosphere
SPECIFICATIONSSPECIFICATIONSReaction conditionsReaction conditions
Order in which reagents added may result in impurities
SPECIFICATIONSSPECIFICATIONS
R O R Br
H
R O
R
H Br+
Mechanism of impurity formationMechanism of impurity formation
Occurs when PBr3 is added to the alcohol but not when the alcohol is added to PBr3
ImpurityR OH
PBr3R Br R O
R
+
ExampleExample
Order of additionOrder of addition
•By-products formed in some reactions may prove difficult to remove•Change the reaction or the reagent to get less troublesome by-products
SPECIFICATIONSSPECIFICATIONS
Example - Wittig reaction
R CH2BrPPh3
R CH2PPh3 Br
R' C
O
H
Wittigreaction
R' C
C
H
H
RP Ph
O
Ph
Ph+
Triphenylphosphineoxide
•By-product = triphenylphosphine oxide •Removal requires chromatography
Troublesome by-productsTroublesome by-products
Horner-Emmons reaction - alternative reaction
SPECIFICATIONSSPECIFICATIONS
•By-product = phosphonate ester •Soluble in water •Removed by aqueous wash
R CH2Br R
R' C
O
H
H P
O
OMe
OMe P O
MeO
MeO
nBuLi
Horner-Emmonsreaction
R' C
C
H
H
R P OMe
O
MeO
O
+
Phosphonate ester
Troublesome by-productsTroublesome by-products
Changing a synthesisChanging a synthesisSPECIFICATIONSSPECIFICATIONS
Example- Grignard synthesis
CH3
MgBrC COCl
H3C
H3C
H3C
CH3
C
CH3
OO C
CH3
CH3
CH3
C
O
CH3
CH3CH3
+
Ester impurity
•The ester impurity is formed by oxidation of the Grignard reagent to a phenol which then reacts with the acid chloride•Avoidable by adding Grignard reagent to the acid chloride but...•Not easy on large scale due to air sensitivity and poor solubility of the Grignard reagent
SPECIFICATIONSSPECIFICATIONS
Different routes to same product
CH3
CCH3
CH3
CH3
CCl
O
CCH3
CH3
CH3
BrMg
Lewis acid
CH3
CO C
CH3
CH3
CH3
CH3
CO
CCH3
CH3
CH3
Li
Cl
CH3
CHN C
CH3
CH3
CH3
CH3
CN
CCH3
CH3
CH3
BrMgCH3
CO C
CH3
CH3
CH3
hydrolysis
Changing a synthesisChanging a synthesis
CH3
CHN C
CH3
CH3
CH3
CH3
CN
CCH3
CH3
CH3
BrMgCH3
CO C
CH3
CH3
CH3
hydrolysis
Inorganic impuritiesInorganic impurities SPECIFICATIONSSPECIFICATIONS
•The final product must be checked for inorganic impurities (e.g. metal salts)
•Deionized water may need to be used if the desired compounds are metal ion chelators or are isolated from water
Patenting
•Carried out as soon as a potentially useful drug is identified
•Carried out before preclinical and clinical trials
•Several years of patent protection are lost due to trials
•Cannot specify the exact structure that is likely to reach market
•Patent a group of compounds rather than an individual structure
•Also patent production method
PATENTING AND REGULATORY AFFAIRSPATENTING AND REGULATORY AFFAIRS
Regulatory affairs
•Drug must be approved by regulatory bodiesFood and Drugs Administration (FDA)European Agency for the Evaluation of Medicinal Products
(EMEA)
•Proper record keeping is essential
•GLP - Good Laboratory Practice
•GMP - Good Manufacturing Practice
•GCP - Good Clinical Practice
PATENTING AND REGULATORY AFFAIRSPATENTING AND REGULATORY AFFAIRS
Phase 1•Carried out on healthy volunteers•Useful in establishing dose levels•Useful for studying pharmacokinetics, including drug metabolism
CLINICAL TRIALSCLINICAL TRIALS
Phase 2•Carried out on patients•Carried out as double blind studies •Demonstrates whether a drug is therapeutically useful•Establishes a dosing regime•Identifies side effects
Phase 3Phase 3•Carried out on a larger number of patientsCarried out on a larger number of patients•Establishes statistical proof for efficacy and safetyEstablishes statistical proof for efficacy and safety
CLINICAL TRIALSCLINICAL TRIALS
Phase 4•Continued after a drug reaches the market•Studies long term effects when used chronically•Identifies unusual side effects