DNA Sequence - Sinica
Transcript of DNA Sequence - Sinica
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DNA Sequence
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Recombinant DNA
BiochemistryGenetic
Molecular Biology
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DNA ligase
Restriction Enzyme
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b-Galactosidase
PUC is a family of plasmids that have an ampicillin resistance gene and
more importantly a lacZ gene. A functional lacZ gene will produce the
protein b - galactosidase. Bacterial colonies in which b - galactosidase is
produced, will form blue colonies in the presence of the substrate 5 -
bromo - 4 - chloro - 3 - indolyl - b - D - galactoside or as it is more
commonly referred to, X-gal.
The enzyme that splits lactose into glucose and galactose. Coded
by a gene (lacZ) in the lac operon of Escherichia coli.
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DNA Sequencing
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DNA Sequencinghttps://www.youtube.com/watch?v=vK-HlMaitnE
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Dye Terminations
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GeneChip
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Scheme
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cDNA Microarray
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NGS Illumina
100-150 bp
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NGS Illumina
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Roche 454 sequencing
1000 bp
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Roche 454 sequencing
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The four main advantages of NGS over classical Sanger sequencing are:
speed
cost
sample size
accuracy
NGS is significantly cheaper, quicker, needs significantly less DNA and is more
accurate and reliable than Sanger sequencing.
NGS is quicker than Sanger sequencing in two ways. Firstly, the chemical reaction
may be combined with the signal detection in some versions of NGS, whereas in
Sanger sequencing these are two separate processes. Secondly and more
significantly, only one read (maximum ~1kb) can be taken at a time in Sanger
sequencing, whereas NGS is massively parallel, allowing 300Gb of DNA to be read
on a single run on a single chip.
The first human genome sequence cost in the region of £300M. Using modern
Sanger sequencing methods, aided by data from the known sequence, a full
human genome would still cost £6M. Sequencing a human genome with Illumina
today would cost only £6,000.
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Third Generation Sequencing
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Digital PCR
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Microarray
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Microarray
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Glass Surface Modification
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Biotin-Streptavidin
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Protein Array
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BSA Blocking
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Cell Array
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hCG immunoassay
human chorionic gonadotropin (hCG)
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Nucleotide Sensor
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Surface Plasmon
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AC Dielectric Response
Plasma frequency
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Biomolecular Binding in Real
TimePrinciple of Detection - SPR (Surface Plasmon Resonance)
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Gold-Dextran Surfaces
SPR (Surface Plasmon Resonance)
Detection System
Microfluidic System
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Localized Plasmon
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