Didier G. Leibovici, Roberto Santos, Dai Huynh, Suchith ... · framework to embed precision...
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AgriGIS and the GRASP platform: a framework to embed precision agriculture
data and processes?Didier G. Leibovici, Roberto Santos, Dai Huynh,
Suchith Anand, Mike Jackson
Nottingham Geospatial InstituteUniversity of Nottingham, UK
East Midlands Satellite Applications Centre of Excellence (EMBRACE)“Spatial solutions for precision farming” workshop
11th of May 2016
BGS, Keyworth, UK
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Agricultural modelling
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a multidisciplinary project between
Crop sciences / Plant Sciences /Agronomy & Geospatial Sciences
• genetic & phenotypic & trait information• agricultural & environmental information• geospatial architecture & data & models management
GRASPGeospatialResourceforAgriculturalSpeciesandPests
2013
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Dr. Didier G Leibovici, Dr. Sam Meek, Dr. Suchith Anand, Pr. Mike Jackson
University of Nottingham, Nottingham Geospatial Science
Interoperability from data integration to geocomputational forecasts
“Geospatial Resource for Agricultural Species and Pests with integrated workflow modelling to support Global Food Security (GRASP-GFS)”
Dr. Rumiana Ray, Dr. Sean Mayes, Pr. Charlie Hodgman, Pr. Sayed Azam-Ali
University of Nottingham, Crop Science / CPIB, CFFRC (Malaysia)
and other partners UK, Australia,…
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Generic workflow of the GRASP projectuse and reuse of available information
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(data and processes at the same level)
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Workflow composition of Data & Processes
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BPMN 2.0
WPS, WFS, WCSCSW …
Semantic Framework…
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Spatial Data Infrastructure
• GeogermplasmDB à genotypic variationsCropStoreDB + OpenGIS ( using PostGIS)
• Workflow composition à crop modellinge.g. coupling a disease model with APSIM
• Quality & error propagation à metadata & decisionclassical error propagation (multiple-run)meta-propagation of uncertainty (WPS)
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major crops (wheat) and underutilised crop (Bambara groundnut)
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GRASPplatform
CropBASE system (CFFRC)
GEOSS
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Current GRASP & H2020
• PhDs – Roberto Santos Genetic and Environmental information (see next)– Masoud Al –Azri Disease modelling & crop growth integration– Dai Huynh Crowdsourcing under-utilised crops
• H2020 past, present & future?– Einfra-9 2015 GRASP-WRE (failed)
– Enfra22.1 2016 GeoHeaVVen reusing the workflow framework (submitted March 2016)
– in Food Security …• Links with CFF (Malaysia)• AgriGIS / OSGIS workshops
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The State of the World’s Plant Genetic Resources for Food and Agriculture
• http://www.fao.org/docrep/013/i1500e/i1500e.pdf
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PhD Roberto Santos: Genetic and Environmental information
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Spatial Patterns in the genetic variation of Bambara groundnut
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Approach:molecularmarkers,environmentaldataandlinguisticdata;
HowenvironmentalandanthropocentricfactorsaffectedthegeneticvariationofBambaragroundnut?
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Spatial Patterns in the genetic variation of Bambara groundnut
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Spatial Patterns in the genetic variation of Bambara groundnut
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Geographicdistance
Geneticdistance
Linguisticdistance
Altitude
PrecipitationBio 5
PrecipitationBio 6
TemperatureBio 13
TemperatureBio 14
Environmentaldistance
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example of Moringa crop• The greatest body of knowledge often lies with the
farmers who have grown the crops.• Crowdsourcing is a potential method to collect
such knowledge (data).• How can the quality of crowdsourced data be
assessed in situations where there is no or limitedground-truth?
• Proposed approach: assessing thematic quality(knowledge) of contributor as a proxy for quality ofdata.
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PhD Dai Huynh: Crowdsourcing under-utilised crops