Development of an AAV-Based Gene Therapy for Children With ...
Transcript of Development of an AAV-Based Gene Therapy for Children With ...
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Development of an AAV-Based Gene
Therapy for Children With
Congenital Hearing Loss Due to
Otoferlin Deficiency (DB-OTO)
Adam Palermo
ASGCT
May 11, 2021
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This presentation contains forward looking statements that involve substantial risks and uncertainties. All statements, otherthan statements of historical facts, contained in this presentation, including statements regarding the Company’s strategy, future operations, future financial position, future revenues, projected costs, prospects, plans and objectives of management, are forward looking statements. The words “anticipate,” “believe,” “continue,” “could,” “estimate,” “expect,” “intend,” “may,” “might,” “plan,” “potential,” “predict,” “project,” “should,” or “would,” or the negative of these terms, or other comparableterminology are intended to identify forward looking statements, although not all forward looking statements contain these identifying words. The Company may not actually achieve the plans, intentions or expectations disclosed in these forward-looking statements, and you should not place undue reliance on these forward-looking statements. Actual results or events could differ materially from the plans, intentions and expectations disclosed in these forward-looking statements. In addition, the forward-looking statements included in this presentation represent the Company’s views as of the date of this presentation. The Company anticipates that subsequent events and developments will cause its views to change. However, while the Company may elect to update these forward-looking statements at some point in the future, it specifically disclaims any obligation to do so. These forward-looking statements should not be relied upon as representing the Company’s views as of any date subsequent to the date of this presentation.
Forward-Looking Statements
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Background
on Otoferlin
Deficiency
Stimulus
Inner hair
cell
Neuron
Signal
transmission
Synaptic ribbon Synaptic ribbon
Synaptic
vesicles
Synapse OtoferlinReleased
Neurotransmitter
Otoferlin
tethered to
membrane
Ca2+
Otoferlin deficiency secondary to biallelic mutations of the OTOF gene causes permanent congenital severe-to-profound deafness. Otoferlin is expressed in the primary sensory receptors of the ear (the inner hair cells) and enables synaptic transmission between the inner hair cells and the dendrites of the auditory nerve by functioning as a calcium sensor for exocytosis during synaptic vesicle release, vesicle trafficking, and replenishment. Of the 1 in 500 neonates who are born with hearing loss annually in the US, 50 to 200 are caused by Otoferlin deficiency.
There are no approved therapies for Otoferlin deficiency; infants with biallelic OTOF mutations are currently managed with assistive devices.
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DB-OTO: Dual AAV to Rescue Otoferlin Deficiency
5’ OTOF-cDNA
3’ OTOF-cDNA
IHC
5’ OTOF-cDNA 3’ OTOF-cDNA
Full-length OTOF vector gene
OTOF mRNA
Otoferlin protein
We have developed an Adeno-Associated Virus (AAV)-based gene transfer therapy for rescue of hearing in an Otoferlin deficiency model that mimics a common human OTOF mutation (OTOFQ828X/Q828X). Because human OTOF cDNA exceeds the packaging capacity of a standard AAV, we used a dual AAV system to locally deliver Otoferlin to the inner ears of OTOFQ828X/Q828X mice.
Key considerations for vector development included the human OTOF isoform that should be expressed, the promoter sequence that determines in which cells the human OTOF will and will not be expressed, the recombinogenic region that enables the dual AAV system, and the capsid in which these elements are packaged for efficient delivery into the target cells.
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Novel OTOFQ828X/Q828X Disease Model Recapitulates Human
Phenotype
Homozygotes
Heterozygotes
• Q829X is a common and well-characterized pathogenic
mutation in Spanish and Latin American populations.
• We generated a mouse disease model by generating
the orthologous mouse mutation, Q828X.
• Hearing thresholds, as measured by auditory brainstem
response (ABR; upper right), were elevated.
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DB-OTO Design ConsiderationsDual AAV1 Vectors with Cell-Selective Myo15 Promoter Controlling Expression of hOTOF
CONFIDENTIAL
Serotype Coding Sequence
Promoter 5’ CDS AP
3’ CDS pAAP
Promoter 5’ CDS AP
3’ CDS pAAP
AAV1 demonstrates broad tropism and
high infectivity in the NHP cochlea.
Outer Hair Cell
Auditory
Nerve
Supporting
Cell Inner
Hair Cell
Outer Hair Cell
Supporting
Cell Inner
Hair Cell
Auditory
Nerve
promoter Transgene
• Goal = restrict transgene expression to target
cell types only (particularly if ectopic expression
of transgene is deleterious outside target cells)
• Design informed by bioinformatics
• Promoter strength may be important to fine tune
transgene levels in transduced cells
Scale
chr11:
TSS peaks
RepeatMasker
5 kb mm10
60,470,000 60,471,000 60,472,000 60,473,000 60,474,000 60,475,000 60,476,000 60,477,000 60,478,000 60,479,000
mMyo15_intron_minimal
Myo15
Myo15
Myo15
Total counts100 -
0 _
Max counts100 -
0 _
Atoh1+InnerEarHairCellsOrganOfCortiPl1+
Sox2+SupportingCellsOrganOfCortiPl1+
uHC
25 -
0 _
uSC
25 -
0 _
Placental Cons
Scale
chr11:
TSS peaks
RepeatMasker
5 kb mm10
60,470,000 60,471,000 60,472,000 60,473,000 60,474,000 60,475,000 60,476,000 60,477,000 60,478,000 60,479,000
mMyo15_intron_minimal
Myo15
Myo15
Myo15
Total counts100 -
0 _
Max counts100 -
0 _
Atoh1+InnerEarHairCellsOrganOfCortiPl1+
Sox2+SupportingCellsOrganOfCortiPl1+
uHC
25 -
0 _
uSC
25 -
0 _
Placental Cons
Scale
chr11:
TSS peaks
RepeatMasker
5 kb mm10
60,470,000 60,471,000 60,472,000 60,473,000 60,474,000 60,475,000 60,476,000 60,477,000 60,478,000 60,479,000
mMyo15_intron_minimal
Myo15
Myo15
Myo15
Total counts100 -
0 _
Max counts100 -
0 _
Atoh1+InnerEarHairCellsOrganOfCortiPl1+
Sox2+SupportingCellsOrganOfCortiPl1+
uHC
25 -
0 _
uSC
25 -
0 _
Placental Cons
ATAC-Seq
Conservation Mouse explant
AAV1 Myo15 GFP 1E11 vg/culture
Proprietary promoter restricts
expression of GFP reporter to hair cells.
Myo7a hair cells
GFP reporter
Mouse explant
AAV1 UbC GFP 1E11 vg/culture
Non-human primate cochlea
AAV1 Myo15 GFP 1E12 vg/ear
V1 isoformDose: 3E9 vg/ear
AAV2quad V1-CO AAV2quad V5-CO0
20
40
60
80
100
120
AB
R T
hre
sh
old
at
22
.6 k
Hz (
dB
SP
L)
No Response at Equipment Limits
Range of normal hearing
V5 isoformDose: 7E9 vg/ear
Human OTOFv5, but not OTOFv1,
rescues hearing in OTOFQ828X/Q828X mice.
V1V4V3V2V5
OTOF splice variant V5 is the predominant
isoform in the NHP and mouse cochlea.
Promoter
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DB-OTO Delivery Rescues Normal Hearing Sensitivity in
Congenitally Deaf Mice
DB-OTO rescues otoferlin protein expression in Q828X
mouse inner hair cells.
DB-OTO rescues auditory brainstem response in
Q828X mouse.
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DB-OTO-Driven Recovery is Durable when Dosed at 4 Weeks of
Age
0 10 20 30 400
20
40
60
80
100
120
mean ABR threshold at 22.6 kHz
Time after treatment (wks)
AB
R T
hre
sh
old
(d
B S
PL
) no neural response at equipment limit
Otof-Q828X wt
Otof-Q828X het
Otof-Q828X mut
Treated Otof-Q828X muthom
hom
OtofQ828X/Q828X = hom; OtofQ828X/+ = het; and Otof+/+ = wt
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DB-OTO Also Rescues Hearing in Mice when Dosed at 32 and 52
Weeks of Age
8 11.3 16 22.6 32 Click0
10
20
30
40
50
60
70
80
90
100
110
4W ABR Threshold (only good DPOAE)
Tone Frequency (kHz)
Th
resh
old
(d
B)
OTOF-10039 52w old 4W vehicle (n=5)
OTOF-10039 32w old 4W vehicle (n=5)
OTOF-10039 1kB-Myo15-hOtof 32W old 4W(n=6)
OTOF-10039 1kB-Myo15-hOtof 52W old 4W(n=6)
Vehicle, 32 wk
Vehicle, 52 wk
DB-OTO, 32 wk
DB-OTO, 52 wk
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OTOF Expression in >20% Inner Hair Cells Restores Normal ABR
Sensitivity in Q828X Mice
No improvement Partial improvement Within normal limits
Fra
ctio
n of
anim
als
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Translation to Non-Human Primates
AAV1-Myo15-dual GFPAAV1-Myo15-dual hOTOF
FFPE sections; ISH & IHCWholemount; immunofluorescence
In order to show that efficacious DB-OTO mouse doses are safely translatable to non-human primates, we dosed the right ears of 6 primates with DB-OTO. We dosed the contralateral ears with a dual AAV construct equivalent to DB-OTO, but with the otoferlin coding sequence replaced with GFP.
In this study, we looked at impact on hearing, expression of GFP quantitatively and human otoferlin qualitatively, and biodistribution outside the ear.
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DB-OTO has Minimal Impact on Wild Type Primate Hearing
Thresholds
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AAV1-Myo15-dual GFP drives robust expression in inner hair cells in
injected NHPs
2 kHz
8 kHz
Vehicle
control
(no AAV)
16 kHz
32 kHz
AA
V1-
Myo
15-d
ualG
FP
Primate vocalization
frequencies
4 kHz
1 kHz
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Outside of the cochlea, AAV genomes were detected in spleen and lymph
node, but not appreciably in other organs
ddPCR- based detection of vector genomes
eGFP DNAScope
1103 1104 1105 1006 3101
0
50
100
150
200
Spleen 5' vector genomes
Animal ID
Co
pie
s M
yo
15/n
g in
pu
t D
NA
1103 1104 1105 1006 3101
0
50
100
150
200
Lumbar DRG, 5' vector genomes
Animal ID
Co
pie
s M
yo
15/n
g in
pu
t D
NA
1101 Cervical Lymph Node closeup 1102 Spleen closeup
L994 brain closeupbrainSpinal cord Spinal cord
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Little to No Impact of Pre-Existing anti-AAV Capsid NAbs on
Dual AAV Expression in the NHP Inner Ear
0
50
100
256 512 1024 2048 4096
GFP versus serum
Serum NAb levels (IC50)
%G
FP
+ c
ells, 1-1
1.3
kH
z
No c
all
Serum NAb Titers vs Transduction
Anim
al =
"10
06"
Anim
al =
"11
01"
Anim
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"11
02"
Anim
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"11
03"
Anim
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"11
04"
Anim
al =
"11
05"
Anim
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01"
0
1000
2000
3000
4000
AAV1 Neutralizing Antibody Levels
NA
b t
iter
(IC
50)
Pre-injection
Day 14
Day 28
Upper limit of detection
SalineAAV1-treated
Serum Neutralizing Antibody Titers
Acceptable NAb levels for
systemic delivery
sero
negative
sero
negative
1 2 3 4 5 6 VehAnimal:
AAV-Treated
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Conclusions
• DB-OTO is an efficacious treatment for otoferlin-deficient hearing loss in
Q828X mice.
• In NHP, DB-OTO and the surgical administration procedure were generally
well-tolerated, and dual AAV was able to drive selective expression of GFP
in the majority of inner har cells.
• We intend to initiate a human phase 1/2 clinical trial in 2022.
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• To address some of the barriers to receiving genetic diagnosis, we have launched
Amplify™: a next generation sequencing panel that includes 203 known hearing loss-
associated genes and is performed in a CLIA certified laboratory by Invitae
• Clinicians who identify a child with auditory neuropathy can offer the parents the
opportunity to receive genetic testing for the child on the Amplify™ comprehensive HL
gene panel at no cost