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This document provides an outline of a presentation and is incomplete without the accompanying oral commentary and discussion. Conclusions and/ or potential strategies contained herein are NOT necessarily endorsed by Pfizer
management. Any implied strategy herein would be subject to management, regulatory and legal review and approval before implementation.
Development and Characterization of
Multi-Platform Antibody Drug Conjugates
Jason A. Starkey
Senior Principal Scientist - BioTherapeutics Pharmaceutical Sciences
Pfizer, Inc.
ADCs Approved and in Clinical
Development
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2000
2011
2013
Tomorrow...
FDA Approvals
Pfizer
Approved in 2000 for AML
Anti-CD33 conjugated to calicheamicin
Subsequently withdrawn from US in 2010
Available in Japan
Seattle Genetics
Anti-CD30 mAb conjugated with vcMMAE
C&E News 92:3, 13-21(2014)
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•Antibody:
– Monoclonal antibody (mAb) or related molecule (e.g. Fc fusion protein) specific
to a cell surface tumor antigen/protein
– Abundant target expression and internalization
•Drug:
– Often highly potent small molecule drug/toxin with validated antitumor/cytotoxic
mechanism of action (e.g. microtubule inhibition, DNA damage)
•Linker:
– Tethers the drug/toxin to the antibody
– Stable in plasma, labile upon internalization to release drug
What is an Antibody Drug Conjugate?
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Clin Cancer Res 17, 6389-6397 (2011)
Antibody-Drug Conjugate Concept
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Goals
Improve selectivity
Improve efficacy
Decrease systemic toxicity
Improve therapeutic index
Examples of ADC Structures
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Wu and Senter Nature Biotech. 23:9, 1137-1146 (2005)
(Shaded: bonds lending to drug release)
Common ADC Conjugation Chemistries
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Cysteine conjugation Lysine conjugation
Site-specific conjugation
Potential impact of new technologies
(e.g site specific conjugation) Controlled drug loading, eliminate mixtures
May improve in pharmaceutical properties
May simplify analytics and development, and
present newer challenges
Junutula, J. R et al Nat Biotechnol, 26, 925-932 (2008)
Strop, P, et al Chem Biol, 20, 161-167 (2013)
Unique Regulatory Space of ADCs
• EMA: EMEA/CHMP/BWP/157653/2007 Guideline on the Development,
Production Characterization and Specifications for Monoclonal Antibodies
and Related Products
• FDA: Points to Consider in the Manufacture and Testing of Monoclonal
Antibody Products for Human Use, 1997
• Unique aspects of ADCs include:
• Characterization of each individual component (mAb, linker, drug)
• Understanding of potency pre- and post-conjugation
• Understanding of product-related impurities pre- and post-conjugation
• Understanding of the amount of free vs conjugated mAb
• Understanding of the amount of free drug and related species
• Number LP attached to mAb and sites of conjugation
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Early Stage Testing Strategy for mAb and ADC
DS/DP - Release/Stability Test Methods
Test Relevant To
Appearance and Description mAb/DS/DP
pH mAb/DS/DP
Protein Content (UV) mAb/DS/DP
Drug loading and drug profile (HIC,
UV, iCE or RP HPLC) DS/DP
Charge profiles1 mAb/DS1/DP1
Identity (peptide mapping) mAb/DS/DP
Purity/Impurity (SEC-HPLC) mAb/DS/DP
Purity/Impurity (CGE or SDS-CE) mAb/DS/DP
Impurity: free drug & related/ free
antibody DS/DP
Biological Activity (Binding ELISA) mAb/DS2/DP2
Biological Activity (Cytotoxicity) DS/DP
Test Relevant To
Safety (Bioburden or Sterility) mAb/DS/DP
Safety (Endotoxin) mAb/DS/DP
Uniformity of Dosage Units DP
Reconstitution Time (for Lyo) DP
Residual Moisture (for Lyo) DP
Particulate Matter (Subvisible
particles) DP
Impurities: Residual Host Cell
Protein, rProtein A (ELISAs) & DNA mAb
N-linked Oligosaccharide profile
(Glycan fingerprint) mAb
Osmolality DS/DP
1 charge profiles may not be as meaningful for Lys conjugates 2 may be replaced by cytotoxicity
Development Considerations - Unconjugated Antibody
• Unconjugated antibody is a recognized attribute that reflects process
consistency capabilities
• Analytical methods for unconjugated antibody have evolved
significantly since the first ADC licensure
– Capillary electrophoresis for charge distribution of lysine-based
conjugates
– HIC for cysteine-based conjugates
– Mass Spectrometry as an orthogonal characterization technique
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0%
5%
10%
15%
20%
25%
0 1 2 3 4 5 6 7 8
Drug Load
0%
5%
10%
15%
20%
25%
0 1 2 3 4 5 6 7 8
Drug Load
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Drug Load Profile by HIC
- Cysteine Conjugates
DL0
DL1
DL2
Cysteine Chemistry
Site Specific Conjugation
HIC is a powerful tool for
determining drug load profiles in
ADCs
AU
0.00
0.20
0.40
0.60
0.80
Minutes
6.00 8.00 10.00 12.00 14.00 16.00 18.00 20.00
DL0
DL2
DL4a DL4b
DL6
Drug Load Profile by HIC
- Lysine Conjugates
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low
co
nju
ga
ted
fracti
on
s
Lysine Chemistry – Heterogenous conjugation at various
sites and not in sets, like cysteine conjugation
Absorb
ance
0.00
0.05
0.10
0.15
pI
6.80 7.00 7.20 7.40 7.60 7.80 8.00 8.20 8.40 8.60 8.80
Absorb
ance
0.00
0.02
0.04
0.06
0.08
0.10
0.12
pI
6.80 7.00 7.20 7.40 7.60 7.80 8.00 8.20 8.40 8.60 8.80
Characterization of Drug Load Distribution
- Lysine Conjugation HIC and iCE
Abs
orba
nce
0.00
0.05
0.10
0.15
0.20
0.25
pI
6.80 7.00 7.20 7.40 7.60 7.80 8.00 8.20 8.40 8.60 8.80
Absorb
ance
0.000
0.010
0.020
0.030
0.040
0.050
pI
6.80 7.00 7.20 7.40 7.60 7.80 8.00 8.20 8.40 8.60 8.80
Absorb
ance
0.000
0.010
0.020
0.030
0.040
0.050
pI
6.80 7.00 7.20 7.40 7.60 7.80 8.00 8.20 8.40 8.60 8.80
D5
D7
D8
D4
iCE ADC + mAb 7.2
77
7.3
70
7.4
55
7.5
58
7.6
52
7.7
70
7.8
92
8.0
19
8.1
55
8.3
28
8.4
72
Absorb
ance
-0.010
0.000
0.010
0.020
0.030
0.040
0.050
0.060
0.070
0.080
0.090
0.100
0.110
0.120
pI
6.80 6.90 7.00 7.10 7.20 7.30 7.40 7.50 7.60 7.70 7.80 7.90 8.00 8.10 8.20 8.30 8.40 8.50 8.60 8.70 8.80
D7 iCE D5
D4
6
D0
D4
D5
D8
D7HIC
Cytotoxicity Assay for ADC Drug Substance and
Drug Product
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Assay format
mAb target antigen
ADC Tumor
cell
tubulin
Payload inhibits tubulin
polymerization, inhibiting
cell division and results
in decreased ATP levels.
payload
Plate tumor cells in assay plate
Serially dilute ADC in dilution plate
Transfer from dilution plate to assay plate
Incubate ~72 hrs in 37 C in 5% CO2 incubator
Add Cell Titer-Glo®, and lyse cells.
Cell Titer-Glo® generates a luminescent response
directly proportional to the amount of ATP present.
ADC concentration
Cell number
ATP
Luminescence
ADC concentration
Cell number
ATP
Luminescence
Representative Standard Curve
Qualification parameters evaluated:
Plate bias
Precision
Accuracy
Range
Linearity
Specificity/selectivity
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Specification ranges are initially established based on bioassay
variability and not process variability.
Cytotoxicity assay is one of many analytical release and/or
characterization tools used to define a product.
Understand clinical dosing escalation plans in order to determine what
range cytotoxicity specification needs to be within.
• Initially set assay specification wide with tighter limits to allow
investigation into out-of-limit results and further understand
assay variability
• Based on assay and process variability, design assay to
support tighter specification if able
• Clinical development timelines and assay development
timelines are challenging to align.
Requires early discussions on clinical plan, early start of cytotoxicity
assay development & more resources to develop and characterize
assay.
Cytotoxicity Assay Specifications Strategy
Characterization Strategy for mAb and ADC DS/DP “Roadmap” for ADCs in Early Development
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"initial characterization
and process
development support:
MS analyses:
Intact protein mass
Subunit/domain isoforms
Peptide map sites
Biochemical analyses:
Drug loading profile (HIC)
Drug-mAb ratio (DAR)
Free drug
Size heterogeneity
Charge heterogeneity
N-glycan profiling (for
mAb DSI only)
Reference Material
Characterization
MS analyses:
Intact protein mass
Subunit/domain isoforms
Peptide map sites
Biochemical analyses:
Drug loading profile (HIC)
Drug-mAb ratio (DAR)
Free drug
Size heterogeneity
Charge heterogeneity
Free sulfhydryl analysis
Biophysical analyses:
2º and 3º structure
Summary of LC/MS – Subunit Analyses for ADCs Comparison of Characterization Methods
AU
0.00
0.50
1.00
AU
0.00
0.20
AU
0.00
0.20
AU
0.00
0.20
AU
0.00
0.20
AU
0.00
0.20
Minutes
10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00 30.00 32.00 34.00 36.00 38.00 40.00
AU
0.0
0.1
0.2
0.3
0.4
AU
0.0
0.1
0.2
0.3
0.4
Minutes
15.0 20.0 25.0 30.0 35.0 40.0
scFc L Chain Fd’
scFc
L Chain
L Chain(1)
Fd’
Fd’(1)
Fd
’(1
)
Fd
’(2
)
Fd
’(2
)
Fd
’(3
)
mAb
ADC
L Chain
H Chain
XXXX
4/5
3/4
3 2/3
2
1
0
ADC
Site-specific Chemistry:
1. ADC is IdeS digested & reduced
2. Fc region is essentially fully
conjugated via quantitative
chromatographic shift
Cys Chemistry:
1. ADC is IdeS digested & reduced
2. Chromatographic profile shows
extent of conjugation in L chain
and Fd’
Lys Chemistry:
1. ADC is reduced & alkylated
2. Acidic pH quantitatively cleaves
hydrazone bond in linker
3. H chain is fully conjugated at known
Fc sites; trace amts. in L chain
pQ-Fd’LC
scFc D/P+vc0101
scFc+vc0101
scFc LCpQ-Fd’
scFc D/P
Fd’
Fd’
mAb
ADC
LC- H20
0
100
200
300
Intens.
[mAU]
0
100
200
300
Intens.
[mAU]
10 12 14 16 18 20 22 24 26 Time [min]
mAb
ADC
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Identify the sites of conjugation
Qualitatively determine the relative abundance of conjugation at each site
mAb-Calicheamicin
mAb
= conjugated peptide
LC/MS – Peptide Mapping (Reduced / Alkylated / Lys-C)
Identify Lys Conjugation Sites, Molecular Integrity & Conjugation Extent
LC/MS – Peptide Mapping (Reduced / Alkylated / Lys-C)
Identify Cys Conjugation Sites, Molecular Integrity & Conjugation Extent
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AU
0.00
0.05
0.10
0.15
0.20
0.25
0.30
0.35
AU
0.00
0.05
0.10
0.15
0.20
0.25
0.30
0.35
Minutes
60.0 70.0 80.0 90.0 100.0 110.0
H12 (
1)
L15
(1)
H13H
14 (
2)
H13H
14 (
1)
H13H
14 (
1)
mAb
Cys Chemistry ADC
H2
7
H1
5
H2
8
L7
H17H18 (N-
glycan), H2
L8
H1
H13H
14
H4
L
5
H7
H8
H7
H2
7D
H1
+V
HS
H1
5O
x
H1
3H
14
G2
38
R
H13H
14
L15: SFNRGEC H12: SCDK H13H14: THTCPPCPAPELLGGPSVFLFPPKPK
All peptide mass measurements are less than 2 ppm.
Numbers in ( ) indicate number of linker-payloads conjugated
Summary
• Pfizer has significant experience with various Antibody Drug
Conjugate (ADC) technologies, and a portfolio that has evolved
over the years
• Analytics are a key component to the advancement of an ADC
development program. The evolution over time of analytical
procedures, approaches, and technologies has greatly
increased our capabilities
• Our ability to better characterize ADCs enhances our capability
to effectively design compounds and develop robust
manufacturing processes
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Acknowledgements
Pfizer BioTherapeutics Pharm Sci ARD
• Rob Morrison, Heyi Li, April Xu, Debbie Meyer, Jeff Borgmeyer, Jim Mo,
Meg Ruesch, Jason Rouse, Tom Porter, Marta Czupryn, Ned Mozier,
Steve Max, Olga Friese, Laura Bass
Pfizer GCMC
• Leslie Bloom, Jackie Moxham, Kristin Murray, Stephanie Pluschkell,
Mark Tardie, Ann Subashi, Tish Webber
Pfizer PPMT
• Steve Max
Pfizer Oncology Research Unit
• Puja Supra
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