Cyberdiversity of Vietnamese Spiders: Illuminating dark taxa with online images and DNA barcodes
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Transcript of Cyberdiversity of Vietnamese Spiders: Illuminating dark taxa with online images and DNA barcodes
Linnaean Nomenclature Unique binomial identifier for every species on earth Stability issues • Unrecognized species may be described again • Can change to reflect changes in classification
Linnaean Nomenclature Unique binomial identifier for every species on earth Stability issues • Unrecognized species may be described again • Can change to reflect changes in classification Gasteracantha hasselti C.L. Koch, 1837
Gasteracantha hasselti C.L. Koch, 1837: 29 Gasteracantha horrens Thorell, 1859: 303 Gasteracantha parvula Thorell, 1859: 303 Gasteracantha blackwalli Keyserling, 1864: 65 Gasteracantha helva Blackwall, 1864: 42 Gasteracantha hepatica L. Koch, 1871: 8 Gasteracantha propinqua Pickard-Cambridge, 1879: 288 Actinacantha pictispina Simon, 1885: 37 Actinacantha propinqua Simon, 1886: 147 Plectana hasselti Thorell, 1887: 224 Plectana blackwallii Thorell, 1890: 68 Gasteracantha hasselti Pocock, 1900: 233 Gasteracantha hasseltii Tikader & Biswas, 1981: 33 Gasteracantha hasselti Yin et al., 2012: 581
Linnaean Nomenclature Unique binomial identifier for every species on earth Stability issues • Unrecognized species may be described again • Can change to reflect changes in classification Gasteracantha hasselti C.L. Koch, 1837
Gasteracantha hasselti C.L. Koch, 1837: 29 Gasteracantha horrens Thorell, 1859: 303 Gasteracantha parvula Thorell, 1859: 303 Gasteracantha blackwalli Keyserling, 1864: 65 Gasteracantha helva Blackwall, 1864: 42 Gasteracantha hepatica L. Koch, 1871: 8 Gasteracantha propinqua Pickard-Cambridge, 1879: 288 Actinacantha pictispina Simon, 1885: 37 Actinacantha propinqua Simon, 1886: 147 Plectana hasselti Thorell, 1887: 224 Plectana blackwallii Thorell, 1890: 68 Gasteracantha hasselti Pocock, 1900: 233 Gasteracantha hasseltii Tikader & Biswas, 1981: 33 Gasteracantha hasselti Yin et al., 2012: 581
Linnaean Nomenclature Unique binomial identifier for every species on earth Stability issues • Unrecognized species may be described again • Can change to reflect changes in classification Gasteracantha hasselti C.L. Koch, 1837
Gasteracantha hasselti C.L. Koch, 1837: 29 Gasteracantha horrens Thorell, 1859: 303 Gasteracantha parvula Thorell, 1859: 303 Gasteracantha blackwalli Keyserling, 1864: 65 Gasteracantha helva Blackwall, 1864: 42 Gasteracantha hepatica L. Koch, 1871: 8 Gasteracantha propinqua Pickard-Cambridge, 1879: 288 Actinacantha pictispina Simon, 1885: 37 Actinacantha propinqua Simon, 1886: 147 Plectana hasselti Thorell, 1887: 224 Plectana blackwallii Thorell, 1890: 68 Gasteracantha hasselti Pocock, 1900: 233 Gasteracantha hasseltii Tikader & Biswas, 1981: 33 Gasteracantha hasselti Yin et al., 2012: 581
Linnaean Nomenclature Unique binomial identifier for every species on earth Stability issues • Unrecognized species may be described again • Can change to reflect changes in classification Gasteracantha hasselti C.L. Koch, 1837
Gasteracantha hasselti C.L. Koch, 1837: 29 Gasteracantha horrens Thorell, 1859: 303 Gasteracantha parvula Thorell, 1859: 303 Gasteracantha blackwalli Keyserling, 1864: 65 Gasteracantha helva Blackwall, 1864: 42 Gasteracantha hepatica L. Koch, 1871: 8 Gasteracantha propinqua Pickard-Cambridge, 1879: 288 Actinacantha pictispina Simon, 1885: 37 Actinacantha propinqua Simon, 1886: 147 Plectana hasselti Thorell, 1887: 224 Plectana blackwallii Thorell, 1890: 68 Gasteracantha hasselti Pocock, 1900: 233 Gasteracantha hasseltii Tikader & Biswas, 1981: 33 Gasteracantha hasselti Yin et al., 2012: 581
Digital Identifiers Stability possible Suitable to be read by computers Can point to variety of objects, e.g., • Taxonomic name • Specimen • Publication • Treatment Gasteracantha hasselti C.L. Kosh, 1837
World Spider Catalog LSID urn:lsid:nmbe.ch:spidersp:016027
Catalogue of Life LSID urn:lsid:catalogueoflife.org:taxon:fc6d0828-f99d-11e4-8596-020044200006:col20150518
GenBank Taxonomy ID 1401002
digitalSpiders Species code SP.RMNH.ARA.ARA0001
SP.RMNH.ARA.ANA0001
Species code
SP.RMNH.ARA.ANA0001
Species code
SP.RMNH.ARA.ANA0001
Species code
Sinanapis longituba Lin & Li 2012
Species name
Vietnam
China
Laos
Thailand
Cat Ba
Cuc Phuong
Vu Quang
1.0
0.8
0.6
0.4
0.2
0.0 0 10 20 30 40 50 60
Positivized latitude
Pro
porti
on Id
entif
ied
Logistic regression p=0.02, R2=0.72
Vietnam
China
Laos Thailand
Cat Ba Cuc Phuong
Doi Inthanon
Myanmar
Vu Quang
0.21
0.14 0.17
0.01
0.03
Community Similarity with Distance
Map plot
Species codes Species codes Species codes Species codes Species codes
Images Images Images
Collection data Collection data Collection data Collection data Collection data
Map plot
DNA aliquots
DNA sequences
Crowd source
Map plot
Digital
Physical
Specimens
Map plot
Species codes Species codes Species codes Species codes Species codes
Images Images Images
Collection data Collection data Collection data Collection data Collection data
Map plot
DNA aliquots
DNA sequences
Crowd source
Map plot
Digital
Physical
Specimens
Institute of Ecology and Biological Resources Hanoi, Vietnam (IEBR) Pham Dinh Sac (IEBR) Khuat Dang Long (IEBR) Naturalis Barcoding Facility (NBF) Kevin K. Beentjes (NBF) Camiel Doorenweerd (NBF) Naturalis Biodiversity Center (NBC) Jan van Tol (NBC) Manon de Waard (NBC Stage) Rense Schelfhorst (NBC Stage) Kees van Achterberg (NBC) Eulalia Gasso Miracle (NBC) Vu Quang National Park Nguyen Thanh Son (Vu Quang) Dao Huy Phien (Vu Quang) Cuc Phuong National Park Lung Van Hien (Cuc Phuong) Cat Ba National Park California Academy of Sciences (CAS) David Kavanaugh (CAS) Morphbank Deb Paul New Year Designs Grace Woo John D. and Catherine T. MacArthur Foundation Pensoft Publishing Lyubomir Penev University of Cincinnati Joshua H. Miller
Acknowledgments