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CV for P.J. Hunter MNZM, DPhil Oxf., ME, FIPENZ(Hon), FRSNZ, FRS Jan 2018

ORCID: orcid.org/0000-0001-9665-4145

Nationality: New Zealander

Date and Place of Birth: 30th July, 1948. Auckland, New Zealand

Telephone: +649 3737599 ext 88395

Fax: +649 3677157

Cell: +6421 505033

Email : p.hunter@auckland.ac.nz

URL: http://www.bioeng.auckland.ac.nz/

Present Positions: Professor of Engineering Science, University of Auckland

Director of the Auckland Bioengineering Institute, University of Auckland

Director, Medical Technologies Centre of Research Excellence (MedTech CoRE)

Visiting Professor in Dept of Physiology, Anatomy & Genetics, Oxford University, UK.

Research Training and Employment B.E. in Engineering Science (1st Class Hons) at Auckland University, NZ 1971

Master’s research in the Dept. of Theoretical & Applied Mechanics at Auckland University 1971 - 1972

Postgraduate research for D.Phil. in Physiology at Oxford University 1972 - 1975

Research Fellow and tutor at St. Catherine's College, Oxford University 1975 - 1977

Research Fellow at Rutherford Laboratory, UK 1975 - 1977

Engineering Lecturer at Keble College, Oxford 1977 - 1978

Lecturer to Professor in Engineering Science at Auckland University 1979 - present

Associate Dean of Research in the School of Engineering 1998 - 1999

James Cook Fellow of the Royal Society of New Zealand 1999 - 2000

Distinguished Professor, University of Auckland 2001 - present

Director of Auckland Bioengineering Institute (ABI) at the University of Auckland, NZ 2001 - present

Co-Director, Computational Physiology, University of Oxford 2003 - present

Director, Callaghan Innovation (NZ Government) 2013 - present

Director, Medical Technologies Centre of Research Excellence (MedTech CoRE) 2015 - 2020

Awards etc N.Z. University Grants Committee Junior Scholarship (Auckland Grammar School) 1966

N.Z. University Grants Committee Postgraduate Scholarship 1972

Commonwealth Scholarship to Oxford University 1972

Queen's College Fellowship University of Oxford 1975

St. Catherine's College/Atlas Computer Lab. Joint Research Fellowship 1975

Appointment as Adjunct Professor at McGill University, Montreal, Canada 1990

Elected Fellow of Royal Society (New Zealand) 1994

Awarded Personal Chair by the University of Auckland 1997

Nominated as Chair of the Physiome Commission of the International Union of Physiological Sciences 1998

Awarded a Royal Society of NZ James Cook Fellowship 1999

Appointment as Adjunct Professor in Physiology at the University of Auckland 2000

Invitation to give the Athol Mann lecture for 2000 2000

Elected Fellow of the American Institute for Medical and Biological Engineering (AIMBE) 2001

Appointed as a Visiting Fellow of the Newton Institute, Cambridge, UK 2001

Awarded Distinguished Professorship by the University of Auckland 2001

Elected to the World Council of Biomechanics 2002

Elected to the Council of the IEEE Engineering in Medicine and Biology Society (EMBS) 2002

Appointed to the Governing Board of NZIMA (NZ Institute of Mathematics & Applications) 2002

Appointed for 5 years as Visiting Professor in Computational Physiology at Oxford University 2003

Appointed for 3 years as a Consultant Editor for the Journal of Experimental Physiology 2003

Appointed to Int.al Scientific Programming Committee of the Int.al Union of Physiological Sciences 2003

Elected Fellow of the International Academy of Medical & Biological Engineering (IAMBE) 2003

Appointed to Editorial board of the Journal of Biomechanics & Modelling in Mechanobiology (BMMB) 2003

Appointed to External Scientific Advisory Cttee of the Mathematical Biosciences Institute (MBI) 2004

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Appointed for 5 years as Visiting Professor at the Centre for Integrative Genetics, Oslo 2004

Appointed as Associate Editor for the PLoS/ISCB Journal of Computational Biology 2004

Appointed as Chair of the Distinguished Lecturer Committee for EMBS 2005

Appointed to Scientific Advisory Board of Hamilton Institute of Systems Biology, Dublin 2005

Awarded Visiting Fellowship at Merton College, Oxford, for Trinity Term, 2005

Appointed to Scientific Advisory board of Functional Imaging and Modelling of the Heart (FIMH) 2005

Appointed to Advisory Committee of UCSD National Biomedical Computation Resource (NBCR) 2005

Appointed to Editorial board of the Journal of Molecular & Cellular Biomechanics (MCB) 2005

Appointed to RSNZ James Cook Research Fellowship selection cmttee (Eng Sci & Tech) for 2 years 2005

Appointed ‘Collaborative Professor’ at Osaka University, Japan 2006

Appointed to Marsden Fund Council and Chair of Math & Information Sciences panel 2006

Appointed as Honorary Professor in the School of Information Technology and Electrical Engineering, UQ 2006

Elected Fellow of the Cardiovascular section of the American Physiological Society 2006

Appointed to Scientific Advisory Board of Simbios Nat.al Center for Biomed. Computation at Stanford Univ. 2006

Appointed for 3 years as Special Professor in the School of Mathematical Sciences at Nottingham Univ, UK 2006

Elected Fellow of Royal Society (London) 2006

Appointed to advisory panel for Research & Education Advanced Network NZ (REANNZ) 2006

Elected General Secretary of the World Council of Biomechanics 2006

Elected to the Academy Council of the Royal Society of NZ 2006

Imperial College Hounsfield medal 2007

Appointed to SAB on Systems Engineering Centre at Northeastern University 2007

‘Augusta’ Science award by Auckland Grammar School 2007

Invitation to give the UK Institute of Mechanical Engineers Prestige Smith & Nephew Lecture 2008

Appointed for further 3 years as Visiting Professor in Computational Physiology at Oxford University 2008

Invitation to give the inaugural MERIT Research lecture at the University of Melbourne 2008

Nominated for Council of International Union of Physiological Societies 2008

Invitation to be international rep on review panel of Engineering Science, Oxford University 2009

Awarded Honorary Doctorate by University of Nottingham, UK 2009

Appointed Chair of the Marsden Fund Council for 3 year term 2009

Appointed to Editorial Board of the Royal Society Journal for cross-disciplinary science: Interface 2009

KEA (Kiwi Expats Abroad) ‘World Class NZ’ award in Research, Science, Technology & Academia category 2009

Awarded Rutherford Medal by Royal Society of New Zealand 2009

Appointed Member of the New Zealand Order of Merit (MNZM) by the NZ Government 2010

Appointed to External Advisory Board for BioSyM (Singapore-MIT Alliance for Research and Technology) 2010

Appointed Honorary Fellow of the Institute of Professional Engineers of New Zealand 2010

Appointed to Advisory Board for the Biomolecular Interaction Centre (BIC), Canterbury University 2010

Appointed to Editorial Board for the International Journal of Numerical Methods in Biomedical Engineering 2010

Appointed to the Science Board of the Ministry of Science and Innovation 2011

Invitation to give Richard Skalak memorial lecture on 50th anniversary of Bioengineering at UCSD 2011

Appointed Acting 1st Vice President International Union of Physiological Sciences (IUPS) 2011

Appointed to Scientific Advisory Board, National Institute of Water & Atmospheric Research (NIWA) 2011

Appointed Associate Editor Biophysical Journal for 3 years 2012

EMBS Academic Career Achievement Award of the IEEE Engineering in Medicine & Biology Society 2012

Appointed Chair External Advisory Board for BioSyM (Singapore-MIT Alliance for Research & Technology) 2012

Appointed to Board of Directors of Callaghan Innovation (NZ Government Crown Entity) 2012

Appointed to Science Advisory Panel, AgResearch 2014

Appointed Chair of RSNZ panel to review the New Zealand Research System 2014

Appointed Associate Editor of Nature Partner Journal Systems Biology and Applications 2014

Elected Chair of the International Academy of Medical & Biological Engineering (IAMBE) 2015

Appointed co-Editor in Chief of Biomechanics and Modeling in Mechanobiology 2016

Awarded Honorary Doctorate by University of Sheffield, UK 2017

Elected Vice-President of the International Union of Physiological Sciences (IUPS) 2017

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Papers in Refereed Journals 1. Michel, C.C., Mason, J.C., Curry, F.E., Tooke, J.E., Hunter, P.J. A development of the Landis technique for

measuring the filtration coefficient of individual capillaries in the frog mesentery. Quarterly Journal of Experimental

Physiology and Cognate Medical Sciences, 59:283-309, 1974.

2. Hunter, P.J., McNaughton, P.A., Noble, D. Analytical models of propagation in excitable cells. Progress in

Biophysics and Molecular Biology, 30:99-114, 1975.

3. Bergel, D.H., Hunter, P.J. The Mechanics of the Heart. Chapter 4 in "Quantitative Cardiovascular Studies, Clinical

and Research Applications of Engineering Principles". Editors: Hwang, H.H.C., Gross, D.R., Patel, D.J. 152-213,

University Park Press, Baltimore, 1979.

4. Smaill, B.H., Douglas, J.E., Hunter, P.J., Anderson, I.A. Steady state heat transfer in the left ventricle. In "Heart

Perfusion, Energetics and Ischemia", Editors: Dintenfass, L., Julian, D.G., Seaman, G.V.F. 623-653, Plenum Press,

1983.

5. McCulloch, A.D., Smaill, B.H., Hunter, P.J. Left ventricular epicardial deformation in the isolated arrested dog

heart. American Journal of Physiology, 252:H233-H241, 1987.

6. Hunter, I.W., Lafontaine, S., Hunter, P.J. A scanning laser microscope for muscle fibre studies. Scanning Imaging

Technology, SPIE, 809:144-150, 1987.

7. Hunter, P.J., McCulloch, A.D., Nielsen, P.M.F., Smaill, B.H. A finite element model of passive ventricular

mechanics. In "Computational Methods in Bioengineering", Editors: Spilker, R.L., Simon, B.R. American Society of

Mechanical Engineers, BED 9:387-398, 1988.

8. Hunter, P.J., Smaill, B.H. The analysis of cardiac function: a continuum approach. Progress in Biophysics and

Molecular Biology, 52(2):101-164, 1988.

9. McCulloch, A.D., Smaill, B.H., Hunter, P.J. Regional left ventricular epicardial deformation in the passive dog

heart. Circ. Res. 64(4):721-733, 1989.

10. Young, A.A., Hunter, P.J., Smaill, B.H. Epicardial surface estimation from coronary angiograms. Computer Vision,

Graphics and Image Processing, 47(1):111-127, 1989.

11. Mayne, A.S.D., Christie, G.W., Smaill, B.H., Hunter, P.J., Barratt-Boyes, B.G. An assessment of the mechanical

properties of leaflets from four second generation porcine bioprostheses using biaxal testing techniques. Journal of

Thoracic & Cardiovascular Surgery, 98(2):170-180, 1989.

12. Glass, L., Hunter, P.J. There is a theory of heart. Physica D 43:1-16, 1990.

13. Hunter I.W., Lafontaine, S., Nielsen, P.M.F., Hunter, P.J., Hollerbach, J.M. Manipulation and dynamic mechanical

testing of microscopic objects using a tele-microrobot system. IEEE Control Systems Magazine, 10(2):3-9, 1990.

14. Nielsen, P.M.F., Le Grice, I.J., Smaill, B.H., Hunter, P.J. A mathematical model of the geometry and fibrous

structure of the heart. American Journal of Physiology, 260(4):H1365-H1378, 1991.

15. Nielsen, P.M.F., Hunter, P.J., Smaill, B.H. Biaxial testing of membrane biomaterials: Testing equipment and

procedures. ASME Journal of Biomechanical Engineering, 113(3):295-300, 1991.

16. Glass, L., Hunter, P.J., McCulloch, A.D. (Editors) “Theory of Heart: Biomechanics, Biophysics and Nonlinear

Dynamics of Cardiac Function.” 1-629, Springer-Verlag, N.Y., 1991.

17. Smaill, B.H., Hunter, P.J. Structure and function of the diastolic heart: Material properties of passive myocardium.

Chapter 1 in "Theory of Heart: Biomechanics, Biophysics and Nonlinear Dynamics of Cardiac Function", Eds. Glass,

L., Hunter, P.J., McCulloch, A.D. Springer-Verlag, N.Y., 1991.

18. Hunter, P.J., Nielsen, P.M.F., Le Grice, I.J., Smaill, B.H., Hunter, I.W. An anatomical heart model with applications

to myocardial activation and ventricular mechanics. Chapter 1 in "High Performance Computing in Biomedical

Research", Editors: Pilkinton, T.C., Loftis, B., Thompson, J.F., Woo, S.L.-Y., Palmer, T.C., Budinger, T.F. CRC Press,

3-26, 1993. Also published in “Critical Reviews in Biomedical Engineering”, 20(5-6):403-427, 1992.

19. McCulloch, A.D., Hunter, P.J., Smaill, B.H. Mechanical effects of coronary perfusion in the passive canine left

ventricle. American Journal of Physiology, 262(2):H523-H530, 1992.

20. Young, A.A., Hunter, P.J., Smaill, B.H. Estimation of epicardial strain using the motions of coronary bifurcations in

biplane cineangiography. IEEE Trans. Biomedical Engineering, 39(5):526-531, 1992.

21. Smaill, B.H., Hunter, P.J. Newer concepts of cardiac mechanics: implications for exercise. In “Exercise - the

Physiological Challenge”, Editor: Hill, P.M. Chapter 7, 87-102, Conference Publishing Ltd, Auckland, New Zealand,

1992.

22. Smith, W.M., Robinson, C.R., Withy, S., Ashton, N., Dawson, L., Hunter, P. Improved system for online epicardial

mapping of complex arrhythmias. New Zealand Medical Journal, 105(943):408-409, 1992.

23. Mawson, D.A., Hunter, P.J., Kenwright, D.N., Loiselle, D.S. Oxygen exchange in the isolated, arrested guinea-pig

heart: theoretical and experimental observations. Biophysical Journal, 66:789-800, 1994.

24. Hunter, I.W., Jones, L., Sagar, M.A., Doukoglou, T., Lafontaine, S., Hunter, P.J. A teleoperated microsurgical robot

and associated virtual environment for eye surgery. Presence – Teleoperators and Virtual Environments, 2(4):256-

280, 1994.

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25. Sagar, M.A., Bullivant, D.P., Mallinson, G.D., Hunter, P.J. and Hunter, I.W. A virtual environment and model of the

eye for surgical simulation. Computer Graphics Proceedings of Siggraph 1994 205-212. Siggraph, A.C.M. Orlando,

Florida, 24-29, 1994.

26. Hunter, I.W., Jones, L.A., Doukoglou, T., Lafontaine, S.R., Hunter, P.J., Sagar, M.A. Ophthalmic microsurgical

robot and surgical simulator. Telemanipulator and Telepresence Technologies, SPIE 2351:184-190, 1994.

27. McGiffin, D.C., Smaill, B.H., Young, A.A., Hunter, P.J., Galbraith, A.J. The effect of synthetic patch repair of

coarctation on regional deformation of the aortic-wall. Circulation, 90(4):95, 1994.

28. Hunter, I.W., Jones, L.A., Sagar, M.A., Lafontaine, S.R., Hunter, P.J. Ophthalmic microsurgical robot and associated

virtual environment. Computers in Medicine and Biology, 25:173-182, 1995.

29. Loiselle, D.S., Van Beek, J.H.G.M., Mawson, D.A., Hunter, P.J. The surface of the heart leaks oxygen. News in

Physiological Sciences, 10:129-133, 1995.

30. LeGrice, I.J., Smaill, B.H., Chai, L.Z., Edgar, S.G., Gavin, J.B., Hunter, P.J. Laminar structure of the heart:

ventricular myocyte arrangement and connective tissue architecture in the dog. American Journal of Physiology –

Heart and Circulatory Physiology, 269(2):H571-H582, 1995.

31. Hunter, P.J. Myocardial constitutive laws for continuum mechanics models of the heart. In “Molecular and

subcellular cardiology: Effects of structure and function”, Adv. Exp. Med. Biol., Editors: Sideman, S., Beyar, R.,

382:303-318, Plenum Press Div, Plenum Publishing Corp., 1995.

32. Hunter, P.J., Smaill, B.H., Nielsen, P.M.F., Le Grice, I.J. A mathematical model of cardiac anatomy. Chapter 6 in

“Computational Biology of the Heart”, Editors: Panfilov, A.V., Holden, A.V. 171-215, John Wiley Series on

Nonlinear Science, Chichester, 1996.

33. Costa, K.D., Hunter, P.J., Rogers, J.M., Guccione, J.M., Waldman, L.K., McCulloch, A.D. A three-dimensional

finite element method for large elastic deformations of ventricular myocardium: Part I - Cylindrical and spherical polar

coordinates. ASME Journal of Biomechanical Engineering, 118(4):452-463, 1996.

34. Costa, K.D., Hunter, P.J., Wayne, J.S., Waldman, L.K., Guccione, J.M., McCulloch, A.D. A three-dimensional finite

element method for large elastic deformations of ventricular myocardium: Part II - Prolate spherical coordinates.

ASME Journal of Biomechanical Engineering, 118(4):464-472, 1996.

35. Hunter, P.J., Nash, M.P., Sands G.B. Computational electro-mechanics of the heart. Chapter 12 in “Computational

Biology of the Heart”, Editors: Panfilov, A., Holden, A. 345-407, John Wiley Series on Nonlinear Science, West

Sussex, England, 1997.

36. Bradley, C.P., Pullan, A.J., Hunter, P.J. Geometric modelling of the human torso using cubic Hermite elements.

Annals of Biomedical Engineering, 25(1):96-111, 1997.

37. Charette, P.G., Hunter, P.J., Hunter, I.W. Large deformation mechanical testing of biological membranes using

speckle interferometry in transmission II: Finite element modelling. Applied Optics 36(10):2246-2251, 1997.

38. LeGrice, I.J., Hunter, P.J., Smaill, B.H. Laminar structure of the heart: a mathematical model, American Journal of

Physiology, 272(5):H2466-H2476, 1997.

39. Charette, P.G., Hunter, I.W., Hunter, P.J. Large deformation mechanical testing of biological membranes using

speckle interferometry in transmission I: Experimental apparatus. Applied Optics 36(10):2238-2245, 1997.

40. Hicks, K.O., Ohms, S.J., Van Zijl, P.L., Denny, W.A., Hunter, P.J., Wilson, W.R. An experimental and

mathematical model for the extravascular transport of a DNA intercalator in tumours. British Journal of Cancer

76(7):894-903, 1997.

41. Hunter, P.J., Arts, T. Tissue remodelling with micro-structurally based material laws. Chapter 20 in “Analytical and

quantitative cardiology: From genetics to function”, Editors: Sideman, S., Beyar, R., Plenum Press, 1997.

42. McCulloch, A.D., Bassingthwaighte, J.B., Hunter, P.J., Noble, D. Computational biology of the heart: from structure

to function. Editorial in focused issue of Progress in Biophysics and Molecular Biology, 69:153-155, 1998.

43. Hunter, P.J., McCulloch, A.D., Ter Keurs, H.E.D.J. Modeling the mechanical properties of cardiac muscle. Progress

in Biophysics and Molecular Biology, 69(2-3):289-331, 1998.

44. Kohl, P., Hunter, P.J., Noble, D. Stretch-induced changes in heart rate and rhythm: clinical observations,

experiments and mathematical models. Progress in Biophysics and Molecular Biology, 71(1):91-138, 1999.

45. Hunter, P.J., Smaill, B.H. Electromechanics of the heart based on anatomical models. In “Cardiac Electrophysiology

from cell to bedside”. 3rd Edn., Editors: Zipes, D.P, Jalife, WB Saunders Company, 32:277-283, 2000.

46. Kohl, P., Noble, D., Winslow, R.L., Hunter, P.J. Computational modelling of biological systems: tools and visions.

Philosophical Transactions of the Royal Society, 358:579-610, 2000.

47. LeGrice, I.J., Young, A.A., Hunter, P.J., Smaill, B.H. New views of cardiac structure. Journal of Molecular and

Cellular Cardiology, 32(3):A1, 2000.

48. Smith, N.P., Pullan, A.J., Hunter, P.J. Generation of an anatomically based geometric coronary model. Annals of

Biomedical Engineering 28(1):14-25, 2000.

49. Tawhai, M.H, Pullan, A.J., Hunter, P.J. Generation of an anatomically based three-dimensional model of the

conducting airways. Annals of Biomedical Engineering. 28(7):793-802, 2000.

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50. Bradley, C.P., Pullan, A.J., Hunter, P.J. Effects of material properties and geometry on electrocardiographic forward

simulations. Annals of Biomedical Engineering, 28(7):721-741, 2000.

51. Smaill, B.H., McGiffin, D.C., Le Grice, I.J., Young, A.A., Hunter, P.J., Galbraith, A.J. The effect of synthetic patch

repair on regional deformation of the aortic wall. Journal of Thoracic and Cardiovascular Surgery, 120(6):1053-1063,

2000.

52. Nash, M.P., Hunter, P.J. Computational mechanics of the heart – from tissue structure to ventricular function.

Journal of Elasticity. 61(1-3):113-141, 2000.

53. Kohl, P., Noble, D., Winslow, R.L., Hunter, P.J. The making of the virtual heart. In: “Views of the Millennium”,

Cambridge University Press, 2001.

54. Nickerson, D.P., Smith, N.P., Hunter, P.J. A model of cardiac cellular electromechanics. Philosophical Transactions

of the Royal Society (London), A359(1783):1159-1172, 2001.

55. Hunter, P.J., Kohl, P., Noble, D. Integrative models of the heart: achievements and limitations. Philosophical

Transactions of the Royal Society (London), A359(1783):1049-1054, 2001.

56. LeGrice, I.J., Hunter, P.J., Young, A.A., Smaill, B.H. The architecture of the heart: a data-based model.

Philosophical Transactions of the Royal Society (London), A359(1783):1217-1232, 2001.

57. Mulquiney, P.J., Smith, N.P., Clarke, K., Hunter, P.J. Mathematical modelling of the ischaemic heart. Nonlinear

Analysis – Theory Methods and Applications, 47(1):235-244, 2001.

58. Tawhai, M.H., Hunter, P.J. Characterising respiratory airway gas mixing using a lumped parameter model of the

pulmonary acinus. Respiration Physiology, 127(2-3):241-248, 2001.

59. Tawhai, M.H., Hunter, P.J. Multibreath washout analysis: modeling the influence of conducting airway asymmetry.

Respiration Physiology, 127(2-3):249-258, 2001.

60. Smith, N.P., Mulquiney, P.J., Noble, D., Hunter, P.J. An integrated computational framework for the construction of

a whole organ model of cardiac function. In: “Computer Simulation and Experimental Assessment of Cardiac

Function”, Editors: Varag, N., Blanc, O., Kappenberger, L. Chapter 14, 113-126, Futura Publishing Company,

Armonk, New York, 2001.

61. Kohl, P., Noble, D., Hunter, P.J. (Editors). Editorial to: The integrated heart: modeling cardiac structure and

function. Philosophical Transactions of the Royal Society, 2001.

62. Garny, A.F., Hunter, P.J., Kohl, P., Noble, D. Anatomically and biophysically detailed computer model of rabbit

sino-atrial node pacemaking. Biophysical Journal, 82(1):93A-94A, 2002.

63. Christie, G.R., Blackett, S.A., Hunter, P.J., Bullivant, D.P. Modeling and visualising the heart. Computing and

Visualization in Science, 4:227-235, 2002.

64. Smith, N.P., Pullan, A.J., Hunter, P.J. An anatomically based model of transient coronary blood flow in the heart,

SIAM Journal of Applied Mathematics, 62(3):990-1018, 2002.

65. Nash, M.P., Nickerson, D.P., Smith, N.P., Hunter, P.J. Computational Electromechanics of the Heart, In

“Mathematical and Computational Modeling of Biological Systems”, Editors: Martins, J., Pires, E.B., “Centro

Internacional de Matematica”, Chapter 2, 39-85, Coimbra, Portugal, 2002.

66. Smith, N.P., Mulquiney, P.J., Nash, M.P., Bradley, C.P., Nickerson, D.P., Hunter, P.J. Mathematical modelling of

the heart: cell to organ. Chaos Solitons and Fractals, 13(8):1613-1621, 2002.

67. Hooks, D.A., Tomlinson, K.A., Marsden, S.G., Le Grice, I.J., Smaill, B.H., Pullan, A.J., Hunter, P.J. Cardiac

microstructure: Implications for electrical propagation and defibrillation in the heart. Circulation Research 91(4):331-

338, 2002.

68. Tomlinson, K.A., Hunter, P.J., Pullan, A.J. A finite element model for an eikonal equation model of myocardial

excitation wavefront propagation. SIAM Journal of Applied Mathematics, 63(1):324–350, 2002.

69. Hunter, P.J., Robbins, P., Noble, D. The IUPS Human Physiome Project. Pflugers Archive – European Journal of

Physiology, 445(1):1-9, 2002.

70. Malcolm, D.T.K., Nielsen, P.M.F., Hunter, P.J., Charette, G. Strain measurement in biaxially loaded

inhomogeneous, anisotropic elastic membranes. Biomechanics and Modelling in Mechanobiology, 1(3):197-210, 2002.

71. Nielsen, P.M.F., Malcolm, D.T.K., Hunter, P J., Charette, G. Instrumentation and procedures for estimating the

constitutive parameters of inhomogeneous elastic membranes. Biomechanics and Modelling in Mechanobiology,

1(3):211-218, 2002.

72. Stevens, C., Buist, M.L., Tomlinson, K.A., Smith, N.P., Pullan, A.J., Hunter, P.J. New developments in the

Auckland heart model. International Journal of Bioelectromagnetism, 4(2), 2002.

73. Tawhai, M., Rankin, N., Ryan, S., Hunter, P.J. Measurement and mathematical modelling of thermodynamics within

the intubated airway. European Respiratory Journal, 20(S38):602s, 2002.

74. Hucka, M., Finney, A., Sauro, H.M., Bolouri, H., Doyle, J.C., Kitano, H., Arkin, A.P., Bornstein, B.J., Bray, D.,

Cornish-Bowden, A., Cuellar, A.A., Dronov, S., Gilles, E.D., Ginkel, M., Gor, V., Goryanin, I.I., Hedley, W.J.,

Hodgman, T.C., Hunter, P.J., Juty, N.S., Kasberger, J.L., Kremling, A., Kummer, U., Le Novère, N., Loew, L.M.,

Lucio, D., Mendes, P., Mjolsness, E.D., Nakayama, Y., Nelson, M.R., Nielsen, P.F., Sakurada, T., Schaff, J.C.,

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Shapiro, B.E., Shimizu, T.S., Spence, H.D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J. The Systems

Biology Markup Language (SBML): A medium for representation and exchange of biochemical network models.

Bioinformatics, 19(4):524–531, 2003.

75. Stevens, C., Remme, E.W., Le Grice, I.J., Hunter, P.J. Ventricular mechanics in diastole: material parameter

sensitivity. Journal of Biomechanics, 36(5):737-748, 2003.

76. Hunter, P.J., Borg, T.K. Integration from proteins to organs: The Physiome Project. Nature Reviews Molecular and

Cell Biology, 4(3):237-243, 2003.

77. Hunter, P.J., Pullan, A.J., Smaill, B.H. Modeling total heart function. Annual Review of Biomedical Engineering,

5:147-177, 2003.

78. Stevens, C., Hunter, P.J. Sarcomere length changes in a 3D mathematical model of the pig ventricles. Progress of

Biophysics and Molecular Biology, 82(1-3):229-241, 2003.

79. Garny, A., Kohl, P., Hunter, P.J., Boyett, M.R., Noble, D. One dimensional rabbit sino-atrial node models: benefits

and limitations. Journal of Cardiovascular Electrophysiology, 14(10):S121-S132, 2003.

80. Cuellar, A.A., Lloyd, C.M., Nielsen, P.F., Halstead, M.D.B., Bullivant, D.P., Nickerson, D.P., Hunter, P.J. An

overview of CellML 1.1, a biological model description language. SIMULATION: Transactions of The Society for

Modeling and Simulation International, 79(12):740-747, 2003.

81. Buist, M.L., Sands, G.B., Hunter, P.J., Pullan, A.J. A deformable finite element derived difference method for

cardiac activation problems. Annals of Biomedical Engineering, 31:577-588, 2003.

82. Smith, N.P., Mulquiney, P.J., Stevens, C., Pullan, A.J., Hunter, P.J. New developments in an anatomical framework

for modeling cardiac ischemia. International Journal of Bifurcation and Chaos, 13(12):3717-3723, 2003.

83. Smith, N.P., Hunter, P.J. Giving form to the function of the heart: Embedding cellular models in an anatomical

framework. Japanese Journal of Physiology, 54:541-544, 2004.

84. Crampin, E.J., Halstead, M., Hunter, P.J., Nielsen, P.M.F., Noble, D., Smith, N.P., Tawhai, M. Computational

physiology and the physiome project. Experimental Physiology, 89(1):1-26, 2004.

85. Burrowes, K.S., Tawhai, M.H., Hunter, P.J. Modeling RBC and neutrophil distribution through an anatomically

based pulmonary capillary network. Annals of Biomedical Engineering, 32(4):585-595, 2004.

86. Tawhai, M.H., Hunter, P.J. Modeling water vapor and heat transfer in the normal and the intubated airways. Annals

of Biomedical Engineering, 32(4):609-622, 2004.

87. Remme, E.W., Hunter, P.J., Smiseth, O., Stevens, C., Rabben, S.I., Skulstad, H., Angelsen, B. Development of an in

vivo method for determining material properties of passive myocardium. Journal of Biomechanics, 37(5):669-678,

2004.

88. Smith, N.P., Nickerson, D.P., Crampin, E.J., Hunter, P.J. Multiscale computational modelling of the heart. Acta

Numerica, 13:371-431, 2004.

89. Hunter, P.J. The IUPS Physiome Project: a framework for computational physiology. Progress in Biophysics and

Molecular Biology, 85(2-3):551-569, 2004.

90. Blackett, S.A., Bullivant, D., Hunter, P.J. Computing the virtual human. ACM Siggraph, 8 August 2004.

91. Tawhai, M.H., Hunter, P.J., Tschirren, J., Reinhardt, J., McLennan, G., Hoffman, E. CT-based geometry analysis

and finite element models of the human and ovine bronchial tree. Journal of Applied Physiology, 97(6):2310-2321,

2004.

92. Crampin, E.J., Smith, N.P., Hunter, P.J. Multi-scale modelling and the IUPS Physiome Project. Journal of Molecular

Histology, 35(7):707-714, 2004.

93. Remme, E.W., Hunter, P.J., Smiseth, O., Stevens, C., Rabben, S.I., Skulstad, H., Angelsen, B. Development of an in

vivo method for determining material properties of passive myocardium. Model Ident Control, 25(4):237-252, 2004.

94. Fernandez, J.W., Mithraratne, P., Thrupp, S.F., Tawhai, M.H., Hunter, P.J. Anatomically based geometric modeling

of the musculo-skeletal system and other organs. Biomechanics and Modeling in Mechanobiology, 2(3):139-155,

2004.

95. Remme, E.W., Young, A.A., Augenstein, K.F., Cowan, B., Hunter, P.J. Extraction and quantification of left

ventricular deformation modes. IEEE Transactions on Biomedical Engineering, 51(11):1923-1931, 2004.

96. Smaill, B.H., Le Grice, I.J., Hooks, D.A., Pullan, A.J., Caldwell, B.J., Hunter, P.J. Cardiac structure and electrical

activation: Models and measurement. Clinical and Experimental Pharmacology and Physiology, 31(12):913-919,

2004.

97. van Essen, N.L., Anderson, I.A., Hunter, P.J., Carman, J., Clarke, R.D., Pullan, A.J. Anatomically based modelling

of the human skull and jaw. Cells, Tissues and Organs, 180(1):44-53, 2005.

98. Hunter, P.J., Smith, N., Fernandez, J., Tawhai, M. Integration from proteins to organs: the IUPS Physiome Project.

Mechanisms of Ageing and Development, 126(1):187-192, 2005.

99. Tawhai, M.H., Nash, M.P., Tschirren, J., Hoffman, E.A., Hunter, P.J. An image based computational model of ovine

lung mechanics and ventilation distribution. Progress in Biomedical Optics and Imaging, 6(23), (SPIE5746), 84-91,

2005.

7

100. Remme, E.W., Augenstein, K.F., Young, A.A., Hunter, P.J. Parameter distribution models for estimation of

population based left ventricular deformation using sparse fiducial markers. IEEE Transactions on Medical Imaging,

24(3):381-388, 2005.

101. Fernandez, J.W., Hunter, P.J. An anatomically based patient-specific finite element model of patella articulation:

Towards a diagnostic tool. Biomechanics and Modeling in Mechanobiology 4(1):20-38, 2005.

102. Fernandez, J.W., Ho, A., Walt, S., Anderson, I.A., Hunter, P.J. A cerebral palsy assessment tool using anatomically

based geometries and free-form deformation. Biomechanics and Modeling in Mechanobiology, 4(1):39-56, 2005.

103. Burrowes, K.S., Hunter, P.J., Tawhai, M.H. Investigation of the relative effects of vascular branching structure and

gravity on pulmonary arterial blood flow heterogeneity via an image-based computational model. Academic

Radiology, 12(11): 1464-1474, 2005.

104. Fernandez, J.W., Buist, M.L., Nickerson, D.P., Hunter, P.J. Modeling the passive and nerve activated response of the

rectus femoris muscle to a flexion loading: a finite element framework. Medical Engineering and Physics, 27(10):862-

870, 2005.

105. Trew, M.H., Smaill, B.H., Bullivant, D.P., Hunter, P.J., Pullan, A.J. A generalised finite difference method for

modeling cardiac electrical activation on arbitrary, irregular computational meshes. Mathematical Biosciences,

198(2):169-189, 2005.

106. Remme, E.W., Nash, M.P., Hunter, P.J. Distributions of myocyte stretch, stress and work in models of normal and

infarcted ventricles. In “Cardiac Mechano-Electric Feedback and Arrhythmias: From pipette to patient”, Editors:

Franz, M., Kohl, P., Sachs, F., Chapter 41, 381-391, Saunders, UK, 2005.

107. Burrowes, K.S., Hunter, P.J., Tawhai, M. Anatomically-based finite element models of the human pulmonary arterial

and venous trees including supernumerary vessels. Journal of Applied Physiology, 99(2):731-738, 2005.

108. Burrowes, K.S., Tawhai, M.H., Hunter, P.J. Evaluation of arterial blood flow heterogeneity via an image-based

computational model. Progress in Biomedical Optics and Imaging, 6 23, (SPIE5746), 257-266, 2005.

109. Burrowes, K.S., Hunter, P.J., Tawhai, M. Evaluation of arterial blood flow heterogeneity using an image-based

computational model. Academic Radiology, 12(11):1464-1474, 2005.

110. Nickerson, D.P., Smith, N.P., Hunter, P.J. New developments in a strongly coupled cardiac electromechanical

model. Europace, 7(2):S118-S127, 2005.

111. Smith, N.P., Stevens, C., Hunter, P.J. Modeling computational ventricular mechanics. Applied Mechanics Reviews,

58:77-90, 2005.

112. Hunter, P.J., Nielsen, P.M.F. A strategy for integrative computational physiology. Physiology, 20:316-325, 2005.

113. Hunter, P.J., Burrowes, K.S., Fernandez, J., Nielsen, P.M.F., Smith, N.P., Tawhai, M. The IUPS Physiome Project:

Progress and plans. In “Computational Systems Biology”, Editors: Kriete, A., Eils, R., Chapter 17, 383-394, Elsevier,

London, 2005.

114. Hunter, P.J. Modeling living systems: the IUPS/EMBS Physiome Project. Proceedings of the IEEE. 94:678-691,

2006.

115. Nickerson, D.P., Hunter, P.J. The Noble cardiac ventricular electrophysiology models in CellML. Progress in

Biophysics and Molecular Biology, 90(1-3):346-359, 2006.

116. Niederer, S.A., Hunter, P.J., Smith, N.P. A quantitative analysis of cardiac myocyte relaxation: A simulation study.

Biophysical Journal, 90(5):1697–1722, 2006.

117. Nickerson, D.P., Nash, M.P., Nielsen, P.M.F., Smith, N.P., Hunter, P.J. Computational multi-scale modeling in the

IUPS Physiome Project: modeling cardiac electromechanics. IBM Research Journal of Research and Development,

50(6):617-630, online at http://www.research.ibm.com/journal/rd/506/nickerson.html, 2006.

118. Schmid, H., Nash, M.P., Young, A.A., Hunter, P.J. Myocardial material parameter estimation - A comparative study

for simple shear. Journal of Biomechanical Engineering-T ASME, 128(5):742-750, 2006.

119. Hunter, P.J., Li, W.W., McCulloch, A.D., Noble, D. Multiscale modeling: Physiome project standards, tools, and

databases. IEEE Computer, 39(11):66-72, 2006.

120. Austin, T.M., Hooks, D.A., Hunter, P.J. Nickerson, D.P., Pullan, A.J., Sands, G.B., Smaill, B.H., Trew, M.L.

Modelling cardiac electrical activity at the cell and tissue levels. Annals of New York Academy of Sciences, Interactive

and Integrative Cardiology, 1080:334-347, 2006.

121. Hunter, P.J. Modeling of biological systems. Experimental Physiology, 91(2):283-284, 2006.

122. Shim, V.B., Pitto, R.P., Streicher, R.M., Hunter, P.J., Anderson, I.A. The use of sparse CT datasets for auto-

generating accurate FE models of the femur and pelvis. Journal of Biomechanics, 40(1)-26-35, 2007.

123. Schmid, H., Nash, M.P., Young, A.A., Röhrle, O., Hunter, P.J. A computationally efficient optimization kernel for

material parameter estimation procedures. Journal of Biomechanical Engineering, 129(2):279-283, 2007.

124. Nash, M.P., Hunter, P.J. Regional mechanics of the beating heart. In “Cardiac Perfusion and Pumping Engineering,

Editors: Ghista, D.N., Ng, E.Y.K. Chapter 4, 83-128, WIT Press, UK, 2007.

125. Cooling, M.T., Hunter, P.J., Crampin, E.J. Modeling hypertrophic IP3 transients in the cardiac myocyte. Biophysical

Journal, 93(10):3421-3433, 2007.

8

126. Dong, Y., Bhattacharyya, D., Hunter, P.J. Characterisation and object-oriented finite element modelling of

polypropylene/organoclay nanocomposites. Advances in Composite Materials and Structures, Pts 1 and 2, 334-

335:841-844, 2007.

127. Cheng, L.K., Hunter, P.J., Mithraratne, P., Pullan, A.J., Remme, E.W., Reynolds, H.M., Smith, N.P., Yassi, R.S.

Clinical applications of physiome project models. In “Repair and Redesign in Physiological Systems: International

Series on Design in Nature”, Editor: Atherton, M., WIT Press, UK, 2008.

128. Nordsletten, D.A., Hunter, P.J., Smith, N.P. Conservative and non-conservative arbitrary Lagrangian-Eulerian forms

for ventricular flows. International Journal for Numerical Methods in Fluids; 56:1457-1463, 2008.

129. Cooling, M., Hunter, P.J., Crampin, E.J. Modeling biological modularity with CellML. IET Systems Biology Journal,

2(2):73-79, 2008.

130. Schmid, H., O’Callaghan, P., Nash, M.P., Lin, W.L., Le Grice, I.J., Smaill, B.H., Young, A.A., Hunter, P.J.

Myocardial material parameter estimation from simple shear tests – a non-homogeneous finite element study.

Biomechanics and Modeling in Mechanobiology, 7(3):161-173, 2008.

131. Hunter, P.J., Crampin, E.J., Nielsen, P.M.F. Bioinformatics, multiscale modelling and the IUPS Physiome Project.

Briefings in Bioinformatics, 9(4):333-343, 2008.

132. Terkildsen, J.R., Niederer, S., Crampin, E.J., Hunter, P.J., Smith, N.P. Using Physiome standards to couple cellular

functions for rat cardiac excitation contraction. Experimental Physiology, 93:919-929, 2008.

133. Garny, A., Nickerson, D.P., Cooper, J., dos Santos, R.W., Miller, A.K., McKeever, S., Nielsen, P.M.F., Hunter, P.J.

CellML and associated tools and techniques. Philosophical Transactions of the Royal Society, A366:3017-3043, 2008.

134. Lloyd, C.M., Lawson, J.R., Hunter, P.J., Nielsen, P.F. The CellML Model Repository. Bioinformatics, 24(18):2122–

2123, 2008.

135. Hunter, P.J., Crampin, E.J., Nielsen, P.M.F. Bioinformatics and the Physiome Project. Bioinformatics, 9(4):333-343,

2008.

136. Swan, A., Hunter, P.J., Tawhai, M. Pulmonary gas exchange in anatomically-based models of the lung. Integration

in Respiratory Control: From genes to systems, Editors: Poulin, M.J., Wilson, R.J.A., 605:184-189, Springer-Verlag,

Berlin, 2008.

137. Frangi, A.F., Bijnens, B., Hose, R., Hunter, P.J. Editorial to special issue on Imaging and the Virtual Physiological

Human. IEEE Transactions on Medical Imaging, 27(6):874, 2008.

138. Vaghefi, E., Hunter, P.J., Jacobs, M.D. 3D finite element modeling of avascular circulation in the ocular lens.

IFMBE Proceedings, 21(1):469-472, 2008.

139. Hunter, P.J., Kurachi, Y., Noble, D., Viceconti, M. The worldwide challenge to Physiome and Systems Biology and

the Osaka Accord. Meeting report on the 2nd MEI International Symposium, Journal of Physiological Sciences,

58(7):425-31, 2008.

140. Hunter, P.J., Viceconti, M. The VPH-Physiome Project: Standards and tools for multi-scale modeling in clinical

applications. IEEE Reviews in Biomedical Engineering, 2:40-53, 2009.

141. Bassingthwaighte, J., Hunter, P.J. Noble, D. The Cardiac Physiome: perspectives for the future. Experimental

Physiology, 94(5):597-605, published online: Jan 26 2009 DOI: 10.1113/expphysiol.2008.044099, 2009.

142. Cooling M.T., Hunter, P.J., Crampin E.J. Sensitivity of NFAT cycling to cytosolic calcium concentration:

Implications for hypertrophic signals in cardiac myocytes. Biophysical Journal, 96(6):2095-2104, 2009.

143. Garny, A., Noble, D., Hunter, P.J., Kohl, P. Cellular Open Resource (COR): current status and future directions.

Philosophical Transactions of the Royal Society, 367(1895):1885 -1905, 2009.

144. Cooling, M.T., Hunter, P.J., Crampin, E.J. Physiome mark-up languages for systems biology: model modularization

and reuse. In “Systems Biomedicine: Methods and Applications, Editors: Liu, E.T., Lauffenburger, D.A., 317-328,

Academic Press, USA, 2009.

145. Smith, N.P., Hunter, P.J., Paterson, D.J. The cardiac physiome: at the heart of coupling models to measurement.

Experimental Physiology, 94(5):469-471, 2009.

146. Schmid, H., Wang, W., Hunter, P.J., Nash, M.P. A finite element study of invariant-based orthotropic constitutive

equations in the context of myocardial material parameter estimation. Computer Methods in Biomechanics and

Biomedical Engineering, 12(6):691-699, 2009.

147. Schmid, H., Wang, Y.K., Ashton, J., Ehret, A.E., Krittian, S.B.S., Nash, M.P., Hunter, P.J. Myocardial material

parameter estimation: a comparison of invariant based orthotropic constitutive equations. Computer Methods in

Biomechanics and Biomedical Engineering, 12(3):283-295, 2009.

148. Beard, D.A., Britten, R., Cooling, M.T, Garny, A., Halstead, M.D.B., Hunter, P.J., Lawson, J, Lloyd, C.M., Marsh, J.,

Miller, A., Nickerson, D.P., Nielsen, P.M.F., Nomura, T., Subramanium, S., Wimalaratne, S.M., Yu, T. CellML

metadata: Standards, associated tools and repositories. Philosophical Transactions of the Royal Society,

A367(1895):1845-1867, 2009.

149. Christie, R., Nielsen, P.M.F., Blackett, S., Bradley, C. and Hunter, P.J. FieldML: concepts and implementation.

Philosophical Transactions of the Royal Society (London), A367(1895):1869-1884, 2009.

9

150. Ho H, Sands G, Schmid H, Mithraratne K, Mallinson G, Hunter P. A hybrid 1D and 3D approach to hemodynamics

modelling for a patient-specific cerebral vasculature and aneurysm. Med Image Comput Comput Assist Interv, 12(Pt

2):323-30, 2009.

151. Harris, P.J., Buyya, R., Chur, X.C., Kobialka, T., Kazmierczak, E., Moss, R., Appelbe, W., Hunter, P.J., Thomas,

S.R. The virtual kidney: an eScience interface and grid portal. Philosophical Transactions of the Royal Society,

A367(1896):2141-2159, 2009.

152. Popel, A.S., Hunter, P.J. Systems Biology and Physiome Projects. Interdisciplinary Reviews, Systems Biology and

Medicine, 1(2):153–158, 2009.

153. Vaghefi, E., Pontre, B., Donaldson, P.J., Hunter, P.J., Jacobs, M.D. Visualisation of transverse diffusion paths across

fiber cells of the ocular lens by small animal MRI. Physiological Measurement, 30(10):1061-1073, 2009.

154. Garny, A., Cooper, J., Hunter, P.J. Toward a VPH/Physiome toolkit. Wiley Interdisciplinary Reviews: Systems

Biology and Medicine, 2(2):134-147, 2010.

155. Ho, H., Mithraratne, K., Schmid, H., Sands, G., Hunter, P.J. Computer simulation of vertebral artery occlusion in

endovascular procedures. International Journal of Computer Assisted Radiology and Surgery, 5(1):29-37, 2010.

156. Zhang, H.Y., Li, B., Young, A.A., Hunter, P.J. Recovery of myocardial kinematic function without the time history

of external loads. Eurasip Journal on Advances in Signal Processing, Article number 310473, 2010.

157. McCormick, M.J.W., Schmid, H., Walker, C.G., Sands, G.B., Nash, M.P., Le Grice, I.J., Hunter, P.J. Quantifying

micro-structural myocardial topology: an algorithm to replicate myocyte networks. Annals of Biomedical Engineering,

(At review) 2010.

158. Ho, H., Mithraratne, K., O’Brien, K., Sands, G., Mallinson, G., Hunter, P.J. A multidimensional approach to

haemodynamics modelling of patient-specific arterial structures. Computer Methods in Biomechanics and Biomedical

Engineering. (In press) 2010.

159. Hunter, P.J., Coveney, P.V., de Bono, B. Diaz, V., Fenner, J., Frangi, A.F., Harris, P., Hose, R., Kohl, P., Lawford,

P., McCormack, K., Mendes, M., Omholt, S., Quarteroni, A., Skår, J., Tegner, J., Thomas, S.T., Tollis, I.,

Tsamardinos, I., van Beek, J.H.G.M., Viceconti, M. A vision and strategy for the VPH in 2010 and beyond.

Philosophical Transactions of the Royal Society. A368(1920):2595-2614, 2010.

160. Vik, J.O., Gjuvsland, A., Li, L., Tøndel, K., Niederer, S., Smith, N.P., Hunter, P.J., Omholt, S.W. Genotype-

phenotype map characteristics of an in silico heart cell. Frontiers in Physiology. 2(106):1-12, 2011. PMID:22232604.

161. Jor, J.W.Y., Nash, M.P., Nielsen, P.M.F., Hunter, P.J. Estimating material parameters of a structurally-based

constitutive relation for skin mechanics. Biomechanics and Modeling in Mechanobiology, 10(5):767-78, 2011.

162. Gianni, D., McKeever, S., Yu, T., Britten, R., Delingette, H., Frangi, A., Hunter, P., Smith, N. Sharing and reusing

cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human

project. Philosophical Transactions of the Royal Society, A368(1921):3039-3056, 2010.

163. Kim, N., Cannell, M.B., Hunter, P.J. Changes in the calcium current among different transmural regions contributes

to action potential heterogeneity in rat heart. Progress in Biophysics and Molecular Biology, 103(1):28-34, 2010.

164. Tøndel, K., Indahl, U.G., Gjuvsland, A.B. Vik, J.O., Berget, I., Hunter, P.J., Omholt, S.W., Martens, H. Hierarchical

local partial least squares regression is an efficient tool for metamodelling of nonlinear dynamic models. BMC Systems

Biology. 5:90:1-17, 2011. doi:10.1186/1752-0509-5-90

165. Nickerson, D.P., Hunter, P.J. Cardiac cellular electrophysiological modeling. In “Cardiac Electrophysiology:

Methods and Models”. Editors: Sigg, D., Iaizzo, P., Xiao, Y.F., He, B., Chapter 7, Springer, 2010.

166. Smaill, B.H., Hunter, P.J. Computer modeling of electrical activation: From cellular dynamics to the whole heart. In

“Cardiac Electrophysiology: Methods and Models”. Editors: Sigg, D., Iaizzo, P., Xiao, Y.F., He, B. Chapter 8,

Springer, 2010.

167. Ramsey, G.D., Hunter, P.J., Nash, M.P. The effect of hoof angle variations on dorsal lamellar load in the equine

hoof. Equine Veterinary Journal, Equine Vet J. 43(5):536-42, 2011. doi: 10.1111/j.2042-3306.2010.00319.x. Epub

2011 Mar 11.

168. Gianni, D., McKeever, S., Yu, T., Britten, R., Delingette, H., Frangi, A., Hunter, P., & Smith, N. Sharing and reusing

cardiovascular anatomical models over the Web: A step towards the implementation of the virtual physiological

human project. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

368(1921): 3039-3056, 2010.

169. Ho, H., Suresh, V., Kang, W., Cooling, M.T., Watton, P.N., Hunter, P.J. Multiscale modeling of intracranial

aneurysms: cell signaling, hemodynamics, and remodeling. IEEE Trans Biomed Eng. 58(10):2974-7, 2011.

170. Jor, J.W.Y., Nielsen, P.M.F., Nash, M.P., Hunter, P.J. Modelling collagen fibre orientation in porcine skin based

upon confocal laser scanning microscopy. Skin Research and Technology, 17(2):149-59, 2011. doi: 10.1111/j.1600-

0846.2011.

171. Smith, N.P., Waters, S., Clayton, R., Hunter, P. The Cardiac Physiome: Foundations and future prospects for

mathematical modelling of the heart. Editorial. Progress in Biophysics and Molecular Biology, 104(1-3):1, 2011

10

172. Ramsey, G.D. Hunter, P.J., Nash, M.P. The influence of tissue hydration on equine hoof capsule deformation and

energy storage assessed using finite element methods. Biosystems Engineering. 2011 On line at

DOI: 10.1016/j.biosystemseng.2011.11.010

173. Ramsey, G.D. Hunter, P.J., Nash, M.P. Modelled equine hoof load distribution predicts hoof contraction and wear

patterns. Submitted 2011

174. Ramsey, G.D. Hunter, P.J., Nash, M.P. A study of hoof biomechanics using a finite element model. Submitted 2011

175. Ho, H., Zhang, C., Xie, X., Hunter, P. A numerical approach to patient-specific cerebral vasospasm research. Acta

Neurochir Suppl, 110(2):157-160, 2011.

176. Yu, T., Lloyd, C.M., Nickerson, D.P., Cooling, M.T., Miller, A.K., Garny, A., Terkildsen, J.R., Lawson, J., Britten,

R.D., Hunter, P.J., Nielsen, P.M. The physiome model repository 2. Bioinformatics, 27(5): 743-744, 2011.

177. Nordsletten, D.A., Niederer S.A., Nash, M.P., Hunter, P.J., Smith, N.P. Coupling multi-physics models to cardiac

mechanics. Progress in Biophysics and Molecular Biology, 104(1-3):77-88, 2011.

178. Miller, A.K., Yu, T., Britten, R., Cooling, M.T., Lawson, J., Cowan, D., Garny, A., Halstead, M.D.B., Hunter, P.J.,

Nickerson, D.P., Nunns, G., Wimalaratne. S.M., Nielsen, P.M.F. Revision history aware repositories of computational

models of biological systems. BMC Bioinformatics. 12:22, Article number 1, 2011.

179. Fonseca, C.G., Backhaus, M., Bluemke, D.A., Britten, R.D., Chung, J.D., Cowan, B.R., Dinov, I.D., Finn, J.P.,

Hunter, P.J., Kadish, A.H., Lee, D.C., Lima, J.A.C., Medrano-Gracia, P., Shivkumar,K., Tao, W., and Young, A.A.

The Cardiac Atlas Project – An imaging database for computational modeling and statistical atlases of the heart.

Bioinformatics 27,16, pp2288–2295, 2011.

180. Nickerson, D.P., Terkildsen, J., Hamilton, K.L. and Hunter, P.J. A tool for multi-scale modelling of the renal

nephron. Interface Focus, 1:417-425, 2011.

181. Smith, N., de Vecchi, A., McCormick, M., Camara, O., Frangi, A.F., Delingette, H., Sermesant, M., Ayache, N.,

Krueger, M.W., Schulze, W., Hose, R., Valverde, I., Beerbaum, P., Staicu, C., Siebes, M., Spaan, J., Hunter, P.J.,

Weese, J., Lehmann, H., Chapelle, D., Razavi, R. euHeart: Personalised and integrated cardiac care using patient-

specific cardiovascular modelling. Interface Focus, In Press 2011. doi:10.1098/rsfs.2010.0048

182. Bradley, C., Bowery, A., Britten, R., Budelmann, V., Camara, O., Christie, R., Cookson, A., Frangi, A.F., Gamage,

T.B., Heidlauf, T., Krittian, S., Ladd, D., Little, C., Mithraratne, K., Nash, M., Nickerson, D., Nielsen, P., Nordbøh,

Ø., Omholt, S., Pashaei, A., Paterson, D., Rajagopal, V.,, Reeve, A., Röhrle, O., Safaei, S., Sebastián, R., Steghöfer,

M., Wu, T., Yu, T., Zhang, H., Hunter, P. OpenCMISS: A multi-physics & multi-scale computational

infrastructure for the VPH/Physiome project. Progress in Biophysics and Molecular Biology, 107:32-47, 2011.

doi:10.1016/j.pbiomolbio.2011.06.015

183. Bousquet, J., Abdelhak, S., Adcock, I., Agusti, A., Anto, J.M., Antonorakis, S., Avignon, A., Ballabio, A., Balling, R.,

Baraldi, E., Baranov, A., Bieber, T., Bockaert, J., Brahmachari, S., Brambilla, C., Brightling, C., Bringer, J., Brookes,

A., Cambon-Thomsen, A., Cesario, A., Charron, D., Chen, Z., Chung, K.F., Dauzat, M., Ernberg, I., Fabbri,L.,

Froguel, P., Galas, D., Gojobori, T., Hood, L., Hunter, P., Jorgensen, C., Kauffmann, F., Kourilsky, P., Kowalski, M.,

Lancet, D., Le Pen, C., Mallet, J., Mayosi, B., Mercier, J., Metspalu, A., Nadeau, J., Ninot, G., Noble, D., Öztürk, M.,

Palkonen, S., Pison, C., Préfaut, C., Rabe, K., Roberts, R.G., Roca, J., Samolinski, B., Schünemann, H.J., Simon, H.-

U., Soares, M.B., Sterk, P.J., Superti-Furga, G., Tegner, J., Verjovski-Almeida, S., Wellstead, P., Wolkenhauer, O.,

Wouters, E., Auffray, C. Systems medicine and integrated care to combat chronic noncommunicable diseases.

Genome Med. 2011 Jul 6;3(7):43. In Press, 2011.

184. Waltemath, D., Adams, R., Beard, D.A., Bergmann, F.T., Bhalla, U.S., Britten, R., Chelliah, V., Cooling, M.T.,

Cooper, J., Crampin, E.J., Garny, A., Hoops, S., Hucka, M., Hunter, P., Klipp, E., Laibe, C., Miller, A.C., Moraru, I.,

Nickerson, D., Nielsen, P., Nikolski, M., Sahle, S., Sauro, H.M., Schmidt, H., Snoep, J.L., Tolle, D., Wolkenhauer, O.

Le Novère, N. Minimum Information About a Simulation Experiment (MIASE). PLoS Computational Biology. 7(4):

e1001122. doi:10.1371/journal.pcbi.1001122, 2011.

185. Wang, Y., Gjuvsland, A.B., Vik, J.O., Smith, N.P., Hunter, P.J., Omholt, S.W. Parameters in dynamic models of

complex traits are containers of missing heritability. PLoS Computational Biology. 2012 Apr;8(4):e1002459. Epub

2012 Apr 5. PMID: 22496634

186. Kohl, P., Hunter, P.J. and Winslow, R.L. Model interactions: It is the simple, which is so difficult. Progress in

Biophysics and Molecular Biology. 2011 Oct;107(1):1-3. Epub 2011 Jul 13. PMID:21777605

187. Quinn TA, Granite S, Allessie MA, Antzelevitch C, Bollensdorff C, Bub G, Burton RA, Cerbai E, Chen PS, Delmar

M, Difrancesco D, Earm YE, Efimov IR, Egger M, Entcheva E, Fink M, Fischmeister R, Franz MR, Garny A, Giles

WR, Hannes T, Harding SE, Hunter PJ, Iribe G, Jalife J, Johnson CR, Kass RS, Kodama I, Koren G, Lord P,

Markhasin VS, Matsuoka S, McCulloch AD, Mirams GR, Morley GE, Nattel S, Noble D, Olesen SP, Panfilov AV,

Trayanova NA, Ravens U, Richard S, Rosenbaum DS, Rudy Y, Sachs F, Sachse FB, Saint DA, Schotten U, Solovyova

O, Taggart P, Tung L, Varró A, Volders PG, Wang K, Weiss JN, Wettwer E, White E, Wilders R, Winslow RL, Kohl

P. Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model

reproducibility, interoperability, and data sharing. Prog Biophys Mol Biol. 2011 Oct;107(1):4-10. Epub 2011 Jul 6.

11

188. Hunter, P., Bradley, C., Britten, R., Brooks, D., Carotenuto, L., Christie, R., Frangi, A., Garny, A., Ladd, L., Little,

C., Nickerson, D., Nielsen,P., Miller, A., Planes, X., Steghoffer, M., Young, A. and Yu, T. The VPH-Physiome

Project: Standards, tools and databases for multi-scale physiological modelling. Chapter in Modelling Physiological

Flows D. Ambrosi, A. Quarteroni, G. Rozza (Eds). Springer, 2011.

189. Shim VB, Hunter PJ, Pivonka P, Fernandez JW. A multiscale framework based on the physiome markup languages

for exploring the initiation of osteoarthritis at the bone-cartilage interface. IEEE Trans Biomed Eng. 2011

Dec;58(12):3532-6. Epub 2011 Aug 30. PMID:21878409.

190. Coveney, P.V., Diaz, V., Hunter, P.J., Kohl, P. and Viceconti, M. The Virtual Physiological Human. March 31, 2011,

doi:10.1098/rsfs.2011.0020

191. Fernandez, J.W., Hunter, P.J., Shim, V., & Mithraratne, K. (2012), ‘A subject-specific framework to inform

musculoskeletal modelling: Outcomes from the IUPS Physiome Project’ Chapter 2 in: Begoña, C., & Peña, E. (Eds.),

Lecture Notes in Computational Vision and Biomechanics: Patient-specific Computational Modelling, Germany,

Springer, pp 39-60.

192. De Bono, B. and Hunter, P.J. Integrating knowledge representation and quantitative modelling in physiology.

Biotechnol. J. 7:958–972, 2012. DOI 10.1002/biot.201100304

193. Fernandez, J., Hunter, P. and Mithraratne, P. (2012), ‘Mechanics of the diabetic foot - Part 1: A continuum model of

soft tissue stimulation’, International Journal for Numerical Methods in Biomedical Engineering. Accepted May

2012. In Press

194. Mithraratne, P., Hunter, P., and Fernandez, J. (2012), ‘Mechanics of the diabetic foot - Part2: A coupled solid-fluid

model to investigate blood transport and angiopathy’, International Journal for Numerical Methods in Biomedical

Engineering. Accepted May 2012. In Press

195. Hussan J, Hunter PJ, Trew ML. A clustering method for calculating membrane currents in cardiac electrical models.

Cardiovascular Engineering and Technology, 3(1), 3-16, 2012.

196. Hussan J, Trew ML, Hunter PJ. A mean-field model of ventricular muscle tissue. Journal of Biomechanical

Engineering, 134(7), 071003:1-13, 2012.

197. Ho, H., Sorrell, K., Peng, L., Yang, Z., Holden, A., Hunter, P., Hemodynamic analysis for Transjugular

Intrahepatic Portosystemic Shunt (TIPS) in the liver based on a CT-Image. IEEE Transactions on Medical Imaging.

2012. In press. DOI: 10.1109/TMI.2012.2219882

198. Ho, H., Sorrell, K., Bartlett, A., Hunter, P. Modeling the hepatic arterial buffer response in the liver. Medical

Engineering and Physics. 2012, 35(8), 1053-1058.. DOI: 10.1016/j.medengphy.2012.10.008

199. Ho, H., Bartlett, A, Hunter, P., Non-Newtonian blood flow analysis for the portal vein based on a CT Image.

Abdominal Imaging. Computational and Clinical Applications, Springer Berlin/Heidelberg, 2012. 7601: pp283-291

200. Coveney, P.V., Diaz-Zuccarini, V., Graf, N., Hunter, P., Kohl, P., Tegner, J. and Viceconti, M. Integrative

approaches to computational biomedicine. Interface Focus. 2013 3 20130003; doi:10.1098/rsfs.2013.0003

201. Hunter, P.J., et al. Discussion: A vision and strategy for the virtual physiological human: 2012 update. Interface

Focus. 2013 3 20130004; doi:10.1098/rsfs.2013.0004

202. Gladding, P., Cave, A., Zareian, M., Smith,K., Hussan, J., Hunter, P., Erogbogbo, F., Aguilar, Z., Martin, D.S., Chan,

E., Homer, M., Shevade, A., Levine, B.D., Kassemi, M., Thomas, J., Schlegel, T.T. Open access integrated therapeutic

and diagnostic platforms for personalized cardiovascular medicine. J. Pers. Med. 2013, 2, 1-x manuscripts;

doi:10.3390/jpm20x000x

203. Gjuvsland AB, Vik JO, Beard DA, Hunter PJ, Omholt SW. Bridging the genotype-phenotype gap: what does it take?

J Physiol. 2013 Feb 11. [Epub ahead of print]. J Physiol. 2013 Apr 15;591(Pt 8):2055-66. doi:

10.1113/jphysiol.2012.248864. Epub 2013 Feb 11. PMID:23401613

204. Hunter PJ. Platelet-rich blood clots Biophys J. 2013 Apr 16;104(8):1641. doi: 10.1016/j.bpj.2013.02.056.

205. Frangi AF, Hose DR, Hunter PJ, Ayache N, Brooks D. Special issue on medical imaging and image computing in

computational physiology. IEEE Trans Med Imaging. 2013 Jan;32(1):1-7. PMID:23409282

206. Fernandez JW, Das R, Cleary PW, Hunter PJ, Thomas CD, Clement JG. Using smooth particle hydrodynamics to

investigate femoral cortical bone remodelling at the Haversian level. Int j numer method biomed eng. 2013

Jan;29(1):129-43. doi: 10.1002/cnm.2503. Epub 2012 Jul 10. PMID:23293073

207. Ho, H., Mithraratne, K., & Hunter, P. (2013). Numerical simulation of blood flow in an anatomically-accurate

cerebral venous tree. IEEE Transactions on Medical Imaging, 32(1), 85-91. doi:10.1109/TMI.2012.2215963

208. Ramsey, G. D., Hunter, P. J., & Nash, M. P. (2013). The influence of loading conditions on equine hoof capsule

deflections and stored energy assessed by finite element analysis. Biosystems Engineering, 115(3), 283-290.

doi:10.1016/j.biosystemseng.2013.04.002

209. Britten, R. D., Christie, G. R., Little, C., Miller, A. K., Bradley, C., Wu, A., Yu T, Hunter P and Nielsen, P. (2013).

FieldML, a proposed open standard for the Physiome project for mathematical model representation.. Med Biol Eng

Comput, 51(11), 1191-1207. doi:10.1007/s11517-013-1097-7

12

210. Wu, T., Hung, A. P. -L., Hunter, P., & Mithraratne, K. (2013). Modelling facial expressions: A framework for

simulating nonlinear soft tissue deformations using embedded 3D muscles. Finite Elements in Analysis and Design,

76, 63-70. doi:10.1016/j.finel.2013.08.002

211. Wu, T., Hung, A. P., Hunter, P., & Mithraratne, K. (2013). On modelling large deformations of heterogeneous

biological tissues using a mixed finite element formulation.. Comput Methods Biomech Biomed Engin. 18(5), 477-

484. doi:10.1080/10255842.2013.818662

212. de Bono, B., Grenon, P., Baldock, R., & Hunter, P. (2013). Functional tissue units and their primary tissue motifs in

multi-scale physiology.. J Biomed Semantics, 4(1), 22. doi:10.1186/2041-1480-4-22

213. Ho H, Hunter P, Pearson G (2013) Parametric representation of lamb carcasses based on computed tomography (CT)

images. In: Farm Animal Imaging, Kaposvár 2013. Ed.: C. Maltin, C. Craigie & L. Bünger. pp 76-79.

214. Wu, T., Martens, H., Hunter, P., & Mithraratne, K. (2014). Emulating facial biomechanics using multivariate partial

least squares surrogate models.. Int J Numer Methog Biomed Eng, 30 (11), 1103-1120. doi:10.1002/cnm.2646

215. Wu, J., Ho, H., Hunter, P., Liu, P. (2014) AneuSearch: a software prototype for intracranial aneurysm searching and

clinicial decision support. International Journal of Computer Assisted Radiology and Surgery.

216. Hung, A. P. L., Wu, T., Hunter, P. and Mithraratne, K. (2014) A framework for generating anatomically detailed

subject-specific human facial models for biomechanical simulations. The Visual Computer.

217. Hunter, P.J. and De Bono, B. (2014) Biophysical constraints on the evolution of tissue structure and function.

Journal of Physiology, 592 (11), 2389-2401.

218. Hussan JR, Hunter PJ, Gladding PA, Greenberg N, Christie R, Wu A, Sorby H, Thomas JD. ICMA: an integrated

cardiac modeling and analysis platform. Bioinformatics. 2015, 31(8). doi: 10.1093/bioinformatics/btu809

219. Garny A, Hunter PJ. OpenCOR: a modular and interoperable approach to computational biology. Front Physiol.

2015 Feb 6;6:26. doi: 10.3389/fphys.2015.00026. eCollection 2015.

220. Nickerson DP, Ladd D, Hussan JR, Safaei S, Suresh V, Hunter PJ, Bradley CP. Using CellML with OpenCMISS to

Simulate Multi-Scale Physiology. Front Bioeng Biotechnol. 2015 Jan 5;2:79. doi: 10.3389/fbioe.2014.00079.

221. de Bono B, Safaei S, Grenon P, Nickerson DP, Alexander S, Helvensteijn M, Kok JN, Kokash N, Wu A, Yu T,

Hunter P and Baldock RA (2015) The Open Physiology workflow: modeling processes over physiology circuitboards

of interoperable tissue units. Front. Physiol. 6:24. doi: 10.3389/fphys.2015.00024

222. Omholt, S.W., Hunter, P.J., The Human Physiome: a necessary key for the creative destruction of medicine.

Interface Focus, 6(2). doi:10.1098/rsfs.2016.0003

223. Safaei, S., Bradley, C. P., Suresh, V., Mithraratne, K., Muller, A., Ho, H., Ladd, D., Hellevik, L.R., Omholt, S.W.,

Chase, J.G., Muller, L.O., Watanabe, S.M., Blanco, P.J., de Bono, B., Hunter, P. J. (2016). Roadmap for

cardiovascular circulation model. The Journal of Physiology. doi:10.1113/JP272660

224. de Bono, B., Helvensteijn., M., Kokash, N., Martorelli, I., Sarwar, D., Islam, S., Hunter, P.J. Requirements for the

formal representation of pathophysiology mechanisms by clinicians. Interface Focus. 6(2), doi: 10.1098/rsfs.2015.0099.

225. Thomas, S., Wolstencroft, K., de Bono, B., & Hunter, P. J. (2016). A physiome interoperability roadmap for

personalized drug development.. Interface focus, 6(2), doi: 10.1098/rsfs.2015.0094

226. Nickerson, D., Atalag, K., de Bono, B., Geiger, J., Goble, C., Hollmann, S., Lonien, J., Muller, W., Regierer, B.,

Stanford, N.J., Golebiewski, M., Hunter, P. (2016). The Human Physiome: how standards, software and innovative

service infrastructures are providing the building blocks to make it achievable.. Interface focus, 6(2), doi:

10.1098/rsfs.2015.0103

227. Autumn Cuellar, Warren Hedley, Melanie Nelson, Catherine Lloyd, Matt Halstead, David Bullivant, David

Nickerson, Peter Hunter, Poul Nielsen. (2015). The CellML1.1 specification Journal of Integrative Bioinformatics

12(2), doi: 10.2390/biecoll-jib-2015-259

228. Cooling MT, Hunter P. The CellML Metadata Framework 2.0 Specification. Journal of Integrative Bioinformatics

12(2):260, 2015, doi:10.2390/biecoll-jib-2015-260

229. Jor, J. W. Y., Babarenda Gamage, T. P., Nielsen, P. M. F., Nash, M. P., & Hunter, P. J. (2016). Relationship

Between Structure and Mechanics for Membranous Tissues. In G. S. Kassab, & M. S. Sacks (Eds.), Structure-Based

Mechanics of Tissues and Organs (pp. 135-173). Springer. doi:10.1007/978-1-4899-7630-7_8

230. Du P, Rassi Y, Windsor J and Hunter PJ. The Virtual Esophagus: investigating esophageal functions in silico. New

York Academy of Sciences 2016

231. Pivonka P, Fernandez, JW & Hunter PJ. (2016). Foreword to the special issue on Bone and cartilage

mechanobiology across the scales.. Biomechanics and modeling in mechanobiology, 15(1), 5-7. doi:10.1007/s10237-

016-0761-x

232. Ngo L, Ho H, Hunter PJ, Quinn K, Thomson A & Pearson G. (2016). Post-mortem prediction of primal and selected

retail cut weights of New Zealand lamb from carcass and animal characteristics.. Meat science, 112, 39-45.

doi:10.1016/j.meatsci.2015.10.012

13

233. Nickerson, D. P., Atalag, K., de Bono, B., & Hunter, P. (2016). The Physiome Project, openEHR Archetypes and the

Digital Patient. In C. D. Combs, J. A. Sokolowski, & C. M. Banks (Eds.), The Digital Patient Advancing Healthcare,

Research, and Education (pp. 101-126). Hoboken, New Jersey, United States: John Wiley & Sons. Retrieved from

http://au.wiley.com/WileyCDA/WileyTitle/productCd-1118952758.html

234. Viceconti, M., & Hunter, P. (2016). The Virtual Physiological Human: Ten Years After.. Annual review of

biomedical engineering, 18, 103-123. ) doi: 10.1146/annurev-bioeng-110915-114742

235. Hunter, P. (2016). The Virtual Physiological Human: The Physiome Project Aims to Develop Reproducible,

Multiscale Models for Clinical Practice. IEEE Pulse, 7(4), 36-42. doi:10.1109/MPUL.2016.2563841

236. Cooling, M. T., Nickerson, D. P., Nielsen, P. M., & Hunter, P. J. (2016). Modular modelling with physiome

standards.. Journal Physiol, 594 (23), 6817-6831. doi: 10.1113/JP272633

237. Hunter, P. J., & Smith, N. P. (2016). The Cardiac Physiome Project.. J Physiol, 594(23), 6815-6816.

doi:10.1113/JP273415

238. Erdemir A, Hunter PJ, Holzapfel GA, Loew LM, Middleton J, et al., Perspectives on sharing models and related

resources in computational biomechanics research. Journal of Biomechanical Engineering, 16 Dec 2017

239. Ho H, Bartlett A, Hunter P. Virtual liver models in pre-surgical planning, intra-surgical navigation and prognosis

analysis. Drug Discovery Today Oct 2017, 10.1016/j.ddmod.2017.09.003

240. Wang VY, Hussan JR, Yousefi H, Bradley CP, Hunter PJ, Nash MP. Modelling cardiac tissue growth and

remodelling. Journal of Elasticity 129(1-2):283-305 (23 pages) Dec 2017

241. de Bono B, Safaei S, Grenon P, Hunter P. Meeting the multiscale challenge: representing physiology processes over

ApiNATOMY circuits using bond graphs. Interface focus 8(1):20170026 Feb 2018

Papers in Refereed Conference proceedings

1. Hunter, P.J. Development of a mathematical model of the left ventricle. Journal of Physiology. 241:87-88P, 1974.

2. Barnard, R.W., Hastings, J.F., Hunter, P.J. An optical system for measuring length changes in isolated cardiac

muscle. Journal of Physiology, 260:14P, 1976.

3. Hunter, P.J. Experimental measurement of cardiac muscle properties. Euromech 92 Conference on Cardiovascular

and Pulmonary Dynamics, 1977.

4. Hunter, P.J. Cardiac muscle mechanics. Journal of Biorheology, 15:463, 1978.

5. Hunter, P. Optical-length transducer for cardiac muscle. New Zealand Medical Journal, 90(649):479, 1979.

6. Hunter, P.J. Application of 3-D finite elements to cardiac mechanics. In "The Mathematics of Finite Elements and

Applications". Editor: Whiteman, J.R. III:480, Academic Press, 1979.

7. Hunter, P.J., Campbell, D.G., Penney, R.K. Comparison of finite element and finite difference solutions of the

advection/diffusion equation and the hydrodynamic shallow water equation. NZ Mathematics Colloquium, May

1980.

8. Hawkins, R.C.W., Humphrey, S.M., Hunter, P.J. Mechanical properties of isolated rat papillary muscle during

anoxic contracture. Journal of Molecular Cellular Cardiology, 10(2): 7, 1982.

9. Anderson, I.A., Douglas, J.E., Hunter, P.J., Smaill, B.H. The effect of coronary occlusion on intramyocardial

temperature. Journal of Molecular and Cellular Cardiology, 10(2):1, 1982.

10. Smaill, B.H., Anderson, I.A., Hunter, P.J. Steady state heat transfer in the left ventricle. Microvascular,

Rheological, Metabolic and Heat Transfer Aspects of the Heart, Proceedings of a NATO advanced research

workshop, Chateau de Bonas, France, 1982.

11. Hunter, P.J., Smaill, B.H., Nielsen P.M.F. Geometry, fibre orientation and sarcomere length measurements in the

dog heart. International Union of Physiological Sciences, 15:321, 1983.

12. Smaill, B.H., Hunter, P.J., McCulloch, A.D. Left ventricular epicardial deformation in the isolated arrested dog

heart. Proceedings of International Union of Physiological Sciences, XV:323, 1983.

13. Hunter, P. J. Continuum mechanics modelling of the passive heart - a comparison of three-dimensional finite

element models and simple geometry models. Proceedings of International Union of Physiological Sciences,

XV:229 (Invited lecture), 1983.

14. Smaill, B.H., Hunter, P. J., McCulloch, A.D. Left ventricular epicardial deformation in the isolated arrested dog

heart. Proceedings of the NZ Physiological Society, 4, July 1984.

15. Smaill, B.H., Barnard, J., McCulloch, A.D., Hunter, P.J. The effects of coronary perfusion on passive left

ventricular filling. Proceedings of the NZ Physiological Society, 5:47, 1985.

16. Nielsen, P.M.F., Hunter, P.J., Smaill, B.H. Mathematical description of ventricular architecture. New Zealand

Physiological Society Conference, 5:48, 1985.

17. Hunter, P.J., Smaill, B.H., Nielsen, P.M.F. Biaxial mechanical testing of biological tissue. Biophysical Journal,

49(2):90a, 1986.

14

18. Hunter, P.J. Smaill, B.H., McCulloch, A.D. The role of anisotropy and twist in the mechanics of the passive heart.

12th Canadian Medical and Biological Engineering Conference Proceedings, 136-137, 1986.

19. Mundy, I., Smaill B.H., Hunter, P.J., McCulloch, A.D. The effects of inhomogeneity of myocardial material

properties on passive left ventricular deformation. Proceedings of the NZ Physiological Society, 6:27, 1986.

20. Nielsen, P.M.F. Hunter, P.J., Smaill, B.H. Field representation using piecewise polynomials. Applied

Mathematics, Conference Division of Applied Mathematics, Australian Mathematical Society, 8-12 February 1987.

21. McCulloch, A.D., Barnard, V., Smaill, B.H., Hunter, P.J. The effects of coronary perfusion on passive left

ventricular mechanics. Proceedings of 9th Asian Pacific Congress of Cardiology, 114, 1987.

22. Mundy, I., Smaill, B.H., Hunter, P.J., McCulloch, A.D. The effects of regional myocardial stiffening on passive

left ventricular deformation. Proceedings of 9th Asian Pacific Congress of Cardiology, 49, 1987.

23. McCulloch, A.D., Hunter, P.J. Cardiac mechanics: An application of finite element techniques using finite

deformation theory. Applied Mathematics Conference Division of Applied Mathematics, Australian Mathematical

Society, 8-12 February 1987.

24. Smaill, B.H., Nielsen P.M.F., Hunter, P.J. Biaxial mechanical testing of membrane biomaterials. 10th Annual

Conference Australasian College of Physical Scientists in Medicine, Engineering & Physical Sciences in Medicine,

EPSM '87, 32, 1987.

25. McCulloch, A.D., Hunter, P.J. Cardiac Mechanics: An application of finite element techniques using finite

deformation theory. Applied Mathematics Conference Division of Applied Mathematics, Australian Mathematical

Society, 8-12 February 1987.

26. Hunter, P.J., McCulloch, A.D., Nielsen, P.M.F., Smaill, B.H. Analysis of deformation and stress in the left

ventricle. 10th Annual Conference Australasian College of Physical Scientists in Medicine, Engineering & Physical

Sciences in Medicine, EPSM '87, 35, 1987.

27. McCulloch, A.D., Smaill, B.H., Hunter, P.J. Regional left ventricular epicardial deformation in the passive dog

heart. FASEB Journal 2(6):A1706, 25 March 1988.

28. McCulloch, A.D., Hunter, P.J. Finite element models of the passive canine left ventricle. SES, 1988.

29. McCulloch, A.D., Hunter, P.J. Finite element models of the passive canine left ventricle. Proceedings of AMES

Conference, Berkeley, 96, June 1988.

30. Nielsen, P.M.F., Hunter I.W., Kearney, R.E., Hunter, P.J. A data structure for tensor field representation. 14th

Canadian Medical and Biological Engineering Conference, 85-86, Montreal, 28-30 June 1988.

31. Hunter, I.W., Lafontaine, S., Nielsen, P.M.F., Hunter, P.J. An apparatus for muscle cell mechanical testing and

laser scanning microscopy. 14th Canadian Medical and Biological Engineering Conference, 109-110, Montreal, 28-

30 June 1988.

32. Hunter, I.W., Lafontaine, S., Nielsen, P.M.F., Hunter, P.J. An apparatus for laser scanning microscopy and

dynamic testing of muscle cells. SPIE Scanning Imaging Technology, 1028:152-159, Hamburg, 19-23 September

1988.

33. Hunter, I.W., Lafontaine, S., Nielsen, P.M.F., Hunter, P.J., Hollerbach, J.M. A tele-microrobot for manipulation

and dynamic mechanical testing of single living cells. IEEE Micro Electro Mechanical Systems Conference, Boston,

20-22 February 1989.

34. Hood, M.A., Smith, W.M., Ashton, N., Burke, N.J., Le Grice, I.J., Hunter, P.J. Epicardial mapping: Circle or

Cinderella? 37th Annual Scientific Meeting of the Cardiac Society of Australia and New Zealand, Gold Coast, 14-17

May 1989.

35. Hunter, I.W., Lafontaine, S., Nielsen, P.M.F., Hunter, P.J., Hollerbach, J.M. Manipulation and dynamic

mechanical testing of microscopic objects using a tele-microrobot system. IEEE International Conference on

Robotics and Automation, Scotsdale, Arizona, 14-19 May 1989.

36. Hunter, I.W., Lafontaine, S., Nielsen, P.M.F., Hunter, P.J. A micro-robot for performing optical and mechanical

experiments on living microscopic objects. 15th Canadian Medical and Biological Engineering Conference, 133-

134, Toronto, 25-28 June 1989.

37. Young, A.A., Hunter, P.J., Ormiston, J.A. Application of a feature detection algorithm to quantitative coronary

angiography. Proceedings of 4th New Zealand Image Processing Workshop, Auckland, New Zealand, July 1989.

38. Hunter, P.J., Hunter, I.W. Soft tissue parameter estimation. Proceedings of the First World Congress of

Biomechanics, I 119, 1990.

39. Hunter, P.J., Le Grice, I.J., Smaill, B.H. Myocardial activation and cardiac muscle mechanics. Proceedings of the

First World Congress of Biomechanics, 2:219, San Diego, USA, 30 August-3 September 1990.

40. McCulloch, A.D., Hunter, P.J. Finite element modelling of left ventricular mechanics. Proceedings of the First

World Congress of Biomechanics, II 4(3):32 [Invited], 1990.

41. Hunter, I.W., Lafontaine, S., Hollerbach, J.M., Hunter, P.J. Fast reversible NiTi fibres for use in microrobotics

Proc. IEEE Micro Electromechanical Systems, Nara, Japan, January 1991.

15

42. McCulloch, A.D., Guccione, J.M., Rogers, J.M., Hunter, P.J. Three-dimensional finite element analysis of stress

and activation in the heart. Mechanics Computing in 1990s and Beyond, Proceedings of EM Div ASCE, 514-518,

May 1991.

43. Hunter, P.J., Smith, W.M., Withy, S.J., Sands, G.B. Analysis of ventricular tachycardia by epicardial mapping.

World Congress on Medical Physics and Biomedical Engineering, Kyoto [Invited], July 1991

44. Hunter, P.J., Hookings, A.G., Le Grice, I.J., Smaill, B.H. Activation of the heart with a 3D finite element model.

13th Ann. Conf. IEEE Engineering in Medicine and Biology Society, Orlando, November 1991.

45. Martel, S., Hunter, I.W., Lafontaine, S., Hunter, P.J. EMAP: An electrophysiological mapping system. Proc.

CMBEC Conference, Toronto, June 1992.

46. Mawson, D.A., Kenwright, D.N., Hunter, P.J., Van Beek, J.H.G.M., Loiselle, D.S. The observed dependence of

the rate of oxygen-consumption of the arrested, isolated heart on coronary flow and arterial pO2 is spurious. Journal

of Molecular and Cellular Cardiology, 24:S21, 1992.

47. Charette, P.G., Hunter, I.W., Hunter, P.J. Biaxial testing of pericardium using electronic speckle pattern

interferometry (ESPI). Proceedings of SPIE: Interferometry Applications, 1756:196-202, 1992.

48. Anderson, I.A., Carman, J.B., Dearnley, P.A., Hunter, P.J., Sullivan, J.M. Towards designer surfaces for prosthetic

joint implants. Proc. Symposium on Biomechanics and Biomedical Engineering, Editors: Middleton, J., Pande,

G.N., Williams, K.R. 108-116, Books and Journals Intl. Ltd, U.K., 1992.

49. LeGrice, I.J., Smaill, B.H., Hunter, P.J. The laminar myocardium: Implications for ventricular function. 29th

Annual Meeting of the Society of Engineering Science, San Diego, USA, 14-16 September 1992.

50. Le Grice, I.J., Smaill, B.H., Hunter, P.J. Myocardial activation by threshold modelling with an anatomically

accurate finite element model. Annual Fall Meeting of the Biomedical Engineering Society, Salt Lake City, 21-24

October 1992.

51. Sands, G.B., Hunter, P.J. Myocardial activation with FHN equations on a moving 3D finite element mesh.

Proceedings of Biomedical Engineering Society, 1992.

52. Charette, P.G., Hunter, I.W., Hunter, P.J. Full field strain measurements during mechanical testing of biological

membranes using electronic speckle pattern interferometry (ESPI). Proceedings of the 19th Canadian Medical and

Biological Engineering Conference, 19:26-29, 1993.

53. Smaill, B.H., Le Grice, I.J., Chai, L.Z., Edgar, S.G., Gavin, J.B., Hunter, P.J. Ventricular myocyte arrangement

and connective tissue architecture in the dog heart. Proceedings of the NZ Physiological Society, 13:10, May 1993.

54. Sagar, M.A., Mallinson, G.D., Hunter, P.J. A 3D computer graphics model of the eye for surgical simulation. 13th

N.Z. Computer Society Conference, August, 1993. Awarded “Best overall paper”.

55. Smaill, B.H., Le Grice, I.J., Hunter, P.J. Laminar structure in the heart and its role in cardiac mechanical function.

“Molecules to Management: Advances in Cardiovascular Research”. Annual Scientific meeting of the International

Society for Heart Research, Australia & New Zealand Section, August 1993.

56. Sands, G.B., Hunter, P.J. A collocation method for electrical activation modelling. “Molecules to Management:

Advances in Cardiovascular Research”. Annual Scientific meeting of the International Society for Heart Research,

Australia & New Zealand Section, August 1993.

57. Hunter, P.J., Nash, M.P. Myocardial material properties from MRI tagging. Molecules to Management: Advances

in Cardiovascular Research, Annual Scientific meeting of the International Society for Heart Research, Australia &

N.Z. Section, August 1993.

58. Pullan, A.J., Bradley, C.P., Hunter, P.J. A high order coupled finite element / boundary element torso model. 20th

Annual Meeting of Computers in Cardiology, Editor: Murray, A. Proceedings IEEE Computer Society Press, 309-

312, London, England, 5-8 September 1993.

59. Pullan, A.J., Bradley, C.P., Hunter, P.J. The development of a high order coupled finite element / boundary

element torso model. 15th Annual International Conference of IEEE Engineering in Medicine and Biology Society.

15:760-761, October 1993.

60. Sands, G.B., Hunter, P.J. A 3D collocation model of bidomain myocardial activation. Proceedings of the Second

World Congress of Biomechanics, I, 1994.

61. Bullivant, D., Martel, S., Lafontaine, S., Nielsen, P.M.F., Hunter, I.W., Hunter, P.J. Electrophysiological data

acquisition, display and analysis. Proceedings of the Second World Congress of Biomechanics, Amsterdam, 10-15

July 1994.

62. Nash, M.P., Hunter, P.J., Smaill, B.H. Ventricular mechanics using an orthotropic constitutive law. Proceedings of

the Second World Congress of Biomechanics, I, Amsterdam, July 1994.

63. McGiffin, D.C., Smaill, B.H., Hunter, P.J. Nonhomogeneous analysis of surface strain distributions in the aorta

after synthetic patch repair of coarctation. Proceedings of the Second World Congress of Biomechanics, I, 1994.

64. Hunter, P.J., Smaill, B.H., Nash, M.P. An orthotropic constitutive law for myocardium. Proceedings of the Second

World Congress of Biomechanics, I, Amsterdam, July 1994.

16

65. Greenslade, J.B., Morris, H.W., Mallinson, G.D., Hunter, P.J. Multi-media developments in engineering education

at the University of Auckland. Proceedings of IEEE 1st International Conference on Multi-Media Engineering

Education, 72-79, 1994.

66. McCulloch, A.D., Costa, K.D., Courtemanche, M., Rogers, J.M., Hunter, P.J. Efficient computational methods for

large-scale modeling of cardiac mechanics and electrical dynamics. Conference on High Performance Computing in

Bioengineering, Pittsburg, 1994

67. Bullivant, D.P., Martel, S., Lafontaine, S. Sands, G.B., Hunter, I.W., Hunter, P.J. Electrophysiological data

acquisition, display and analysis. Proceedings of Conference on Physics in Medicine and Biology, Rio de Janeiro,

577, August 1994.

68. Anderson, I.A., Carman, J.B., Hunter, P.J. Cellular models for cancellous bone. Proceedings of the first

Australasian Biomechanics Conference, Sydney, Australia, February 1995.

69. Nash, M.P., Hunter, P.J. Heart mechanics using mathematical modeling. 2nd NZ Postgrad. Conference for

Engineering and Technology students, Auckland, New Zealand, September 1995.

70. Le Grice, I.J., Smaill, B.H., Hunter, P.J., Young, A.A. Laminar architecture of ventricular myocardium: roles in

cardiac electrical and mechanical function. 27th Annual Meeting of the Australasian Society for Experimental

Pathology, Auckland, October 1995.

71. Sagar, M.A., Bullivant, D.P., Hunter, P.J. Model of cardiac anatomy for virtual surgery. Proceedings of IEEE

Conference on Engineering and Physics in Medicine, 112, Queenstown, New Zealand, November 1995.

72. Hunter, P.J., Sands, G.B. Modelling the electro-mechanical behaviour of cardiac tissue. Proceedings of IEEE

Conference on Engineering and Physics in Medicine, 167, Queenstown, New Zealand, November 1995.

73. Bullivant, D.P., Martel, S., Lafontaine, S., Hunter, P.J., Hunter, I.W. UnEmap: An electrophysiological data

acquisition, display and analysis system. Proceedings of IEEE Conference on Engineering and Physics in Medicine,

62, Queenstown, New Zealand, November 1995.

74. Sands, G.B., Hunter, P.J. A collocation model of bidomain activation in an anatomically correct heart.

Proceedings of IEEE Conference on Engineering and Physics in Medicine, 112, Queenstown, New Zealand,

November 1995.

75. Tomlinson, K.A., Hunter, P.J., Pullan, A.J. Finite element solution of an eikonal equation for cardiac activation

wavefront propagation. Procs. of IEEE Conference on Engineering and Physics in Medicine, 207, Queenstown,

New Zealand, November 1995.

76. Bradley, C.P., Pullan, A.J., Hunter, P.J. 3D human torso modelling for electrocardiography. Proceedings of IEEE

Conference on Engineering and Physics in Medicine, 63, Queenstown, New Zealand, November 1995.

77. Harris, G.M., Hunter, P.J., Pullan, A.J. EEG modelling on an anatomically accurate skull model. Model

proceedings of Engineering and Physics in Medicine Conference, 68, Queenstown, November 1995.

78. Nash, M.P., Hunter, P.J. Mechanics of the passive heart. Proceedings of IEEE Conference on Engineering and

Physics in Medicine, 165, Queenstown, New Zealand, November 1995.

79. Howatson, M., Harris, E.A., Hunter, P.J. Gas transport in a mathematical model of the human pulmonary acinus.

Proceedings of IEEE Conference on Engineering and Physics in Medicine, 191, Queenstown, New Zealand,

November 1995.

80. Charette, P.G., Hunter, I.W., Hunter, P.J. A method for full-field mechanical testing of biological membranes

based on speckle pattern interferometry. Proceedings of IEEE Conference on Engineering and Physics in Medicine,

170, Queenstown, New Zealand, November 1995.

81. Nielsen, P.M.F., Reinholz, F.N., Charette, P.G., Hunter, P.J. A fibre optic based confocal microscope suited for

polarisation imaging of biological specimens. Proceedings of IEEE Conference on Engineering and Physics in

Medicine, 218, Queenstown, New Zealand, November 1995.

82. Hunter, P.J., Nash, M.P., Sands, G.B. Coupled electro-mechanics of the heart and torso. ASME Mechanics and

Materials Conference, 262, Baltimore, USA, 12-15 June 1996.

83. Pullan, A.J., Bradley, C.P., Nash, M.P., Sands, G.B., Hunter, P.J. Coupled systems in electro-mechanics. 23rd

International Conference on Electrocardiography, Editor: Press W.S., 133¸ Electrocardiology 96: From the cell to

the body surface, 135-138, Cleveland, USA, 31 July-4 August 1996.

84. Sands, G.B., Hunter, P.J. A collocation-multigrid model of bidomain activation as a component of a complete

electrocardiological model. Proceedings of 23rd International Conference on Electrocardiology, 128, Cleveland,

USA, August 1996.

85. Bradley, C.P., Pullan, A.J., Hunter, P.J. 3D human torso modelling for electrocardiography. 23rd International

Conference on Electrocardiography, Editor: Press W.S., 132, Electrocardiology 96: From the cell to the body

surface, 169-172, Cleveland, USA, 31 July-4 August 1996.

86. Tomlinson, K.A., Hunter, P.J., Pullan, A.J. The eikonal equation approach to modelling excitation wavefront

propagation. 23rd International Conference on Electrocardiography, Editor: Press W.S., 130, Electrocardiology 96:

From the cell to the body surface, 165-168, Cleveland, USA, 31 July-4 August 1996.

17

87. Bullivant, D., Hunter, P.J., Martel, S., Lafontaine, S., Hunter, I.W. Mapping electro-physiological activity.

Proceedings of 23rd International Conference on Electrocardiology, 38, Cleveland, USA, August 1996.

88. Martel, S., Lafontaine, S., Hunter, I.W., Hunter, P.J. Design of an electro-physiological data acquisition system.

Proceedings of 23rd International Conference on Electrocardiology, 104, Cleveland, USA, August 1996.

89. Nash, M.P., Sands, G.B., Bullivant, D., Hunter, P.J. Modelling the electro-mechanics of the heart. (PJH Invited

lecture), 23rd International Congress on Electrocardiology, Cleveland, USA, August 1996.

90. Anderson, I.A., Carman, J.B., Hunter, P.J. Material constants for cancellous bone derived from cellular finite

element models. 10th Conference of the European Society of Biomechanics, 208, Leuven, 28-31 August 1996.

91. Sagar, M.A., Mallinson, G.D., Bullivant, D.P., Hunter, P.J. Creating volume based virtual anatomy for

bioengineering analysis. Siggraph Computer Graphics Visual Proceedings: Technical Sketches, 140, 1996.

92. Bradley, C.P., Nash, M.P., Sands, G.B., Pullan, A.J., Hunter, P.J. Coupled systems in electro-mechanics. 23rd

International Congress of Physiological Science IUPS, St Petersburg, Russia, 30 June-5 July 1997.

93. Nielsen, P.M.F., Hunter, P.J., Charette, P.G. Cardiac electromechanical modeling. 23rd International Congress of

Physiological Sciences, St Petersburg, Russia, 30 June-5 July 1997.

94. Anderson, I.A., Carman, J.B., Hunter, P.J. The calculated state of stress and strain in the femoral head: effects of

material symmetry assumptions, Orthopaedic Research Society Transactions, 22:814, 1997.

95. Boyes, R.G., Hunter, P.J., Mallinson, G.D. Ventricular fluid dynamics. 2nd Australasian Biomechanics

Conference Proceedings, Auckland, January 1998.

96. Hunter, P.J., Sagar, M.A., Bullivant, D.P., Charette, P.G. A mathematical model of the human face. 2nd

Australasian Biomechanics Conference Proceedings, Auckland, January 1998.

97. Kirton, R.S., Nielsen, P.M.F., Hunter, P.J., Loiselle, D.N. The design of a micro-calorimeter for determining the

heat output from cardiac tissue. 2nd Australia and New Zealand Society of Biomechanics Conference, Auckland, 28-

30 January 1998.

98. Hume, P.A., Marshall, R.N., Hunter, P.J., Stanley, S.J.P., Anderson, I.A., McNair, P.J. (editors) 2nd Australia and

New Zealand Society of Biomechanics Conference, Auckland: The Department of Sport and Exercise Science. The

University of Auckland, 28-30 January 1998.

99. Smith, N.P., Hunter, P.J., Pullan, A.J. An anatomically realistic coronary model. 2nd Australasian Biomechanics

Conference, Auckland, 28-30 January 1998.

100. Smith, N.P., Pullan, A.J., Hunter, P.J. An anatomically accurate mathematical model of coronary blood flow

coupled to cardiac contraction. FASEB Journal, 13(5):A1076, 1999.

101. Nielsen, P.F., Hunter, P.J. Identification of the constitutive relations of soft membranes. FASEB Journal,

13(5):A1076, 1999.

102. Nielsen, P.M.F., Hunter, P.J., Charette, P.G. Model based identification of soft membrane constitutive relations.

2nd Australia and New Zealand Society of Biomechanics Conference, Auckland, 28-30 January 1998.

103. Buist, M.L., Pullan, A.J., Hunter, P.J. Modelling the Purkinje Fibre network. 2nd Australasian Biomechanics

Conference, Auckland, 28-30 January 1998.

104. Stevens, C., Pullan, A.J., Hunter, P.J. Applications of continuum modelling in virtual surgery. 2nd Australasian

Biomechanics Conference, Auckland, 28-30 January 1998.

105. Nickerson, D.P., Hunter, P.J. Single cell cardiac model. 2nd Australasian Biomechanics Conference Proceedings,

Auckland, January 1998.

106. Bradley, C.P., Pullan, A.J., Hunter, P.J. 3D human torso modelling for electrocardiography. 2nd Australasian

Biomechanics Conference, Auckland, New Zealand, 28-30 January 1998.

107. Tawhai, M.H., Hunter, P.J. A 3D anatomically accurate mathematical model of the human lungs. 2nd Australasian

Biomechanics Conference, Auckland, 28-30 January 1998.

108. Buist, M.L., Hunter, P.J., Pullan, A.J. Modelling the specialised ventricular conduction system. 25th International

Conference on Electrocardiography, Editor: Press W.S., Electrocardiology ’98, Budapest, Hungary, June 1998.

109. Le Grice, I.J., Smaill, B.H., Young, A.A., Hunter, P.J. A new view of cardiac architecture. Symposium on

Cardiovascular Function in Health and Disease, Sydney, June 1998.

110. Le Grice, I.J., Hunter, P.J., Smaill, B.H., Young, A. A different view of the heart: an integrative approach to the

analysis of cardiac function. Symposium on Cardiovascular Function in Health and Disease, Sydney, June 1998.

111. Smith, N.P., Hunter, P.J., Nash, M.P., Pullan, A.J. An anatomically realistic coronary model. 11th Conference of

the European Society of Biomechanics, Toulouse, France, 8-11 July 1998.

112. Anderson, I.A., Carman, J.B., Hunter, P.J. Femoral head cancellous bone: architecture, mechanical properties, and

density. Australian Society for Biomaterials 8th Annual Meeting, Maryville, Victoria, 1998.

113. Tawhai, M.H, Hunter, P.J. Gas mixing in an asymmetric multi-branching model of the human lungs. FASEB

Journal, Federation American Society of Experimental Biology, 13:A496, 12 March 1999.

114. Nickerson, D.P., Hunter, P.J. Coupled cardiac electromechanics. FASEB Journal, Federation American Society of

Experimental Biology, 13:A1076, 15 March 1999.

18

115. Tomlinson, K.A., Pullan, A.J., Hunter, P.J. Modeling myocardial excitation wavefront propagation in ventricles by

finite element solution of an eikonal equation. Annual International Conference of the IEEE Engineering in

Medicine and Biology – Proceedings, 2:1199, 1999.

116. Hunter, P.J., Nielsen, P.M.F., Pullan, A.J. Integrated heart – a progress report on the Cardiome Project. Annual

International Conference of the IEEE Engineering in Medicine and Biology – Proceedings, 2:1196, 1999.

117. Smith, N.P., Hunter, P.J., Pullan, A.J., Nash, M.P. An anatomically realistic mathematical model of coronary

blood flow coupled to cardiac contraction. FASEB Journal, 13:A1076, Experimental Biology, Washington D.C.,

USA, 17-21 April 1999.

118. Nielsen, P.M.F., Hunter, P.J. Identification of the constitutive relations of soft membranes. Experimental Biology

‘99¸Washington D.C., USA, 17-21 April 1999.

119. Tawhai, M., Hunter, P.J. Gas mixing in an asymmetric multi-branching model of the human lungs. Proceedings of

Experimental Biology ‘99, Washington DC, May 1999.

120. Buist, M.L., Pullan, A.J., Hunter, P.J. Modelling electrical activity from cell to body surface. Annual International

Conference of the IEEE Engineering in Medicine and Biology Proceedings, 2:1174, 1999.

121. Bhattacharyya, D., Dykes, R.J., Hunter, P.J. Analysis of roll forming continuous fibre-reinforced thermoplastic

sheets. 5th International Conference on Flow Processes in Composite Materials, Advanced Composites

Manufacturing Centre, 235-256, University of Plymouth, Plymouth, England, 12-14 July 1999.

122. Hunter, P.J. Integrative physiology of the heart: The development of anatomically and biophysically based

mathematical models of myocardial activation, cardiac mechanics and coronary flow. Proceedings of the 47th

Annual Scientific Meeting of the Cardiac Society of Australia and New Zealand. Wellington, 7-11 August 1999.

123. Buist, M.L., Pullan, A.J., Hunter, P.J. Modelling electrical activity from cell to body surface. Proceedings of the

First Joint Meeting of BMES and IEEE/EMBS (Annual BMES conference and 21st Annual IEEE/EMBS conference),

189, Atlanta, USA, 13-16 October 1999.

124. Hunter, P.J., Nielsen, P.M.F., Pullan, A.J. The integrated heart – A progress report on the cardiome project. First

Joint Meeting of BMES and IEEE/EMBS (Annual BMES conference and 21st Annual IEEE/EMBS conference), 192,

Atlanta, USA, 13-16 October 1999.

125. Kohl, P., Cooper, P., Cheng, L.X., Linz, K., Garny, A., Noble, D., Hunter, P.J. Effects of stretch on heart rhythm:

Theory & practice. Proceedings of The Annual Biomedical Engineering Society meeting, Atlanta, USA, 13-16

October 1999.

126. Tomlinson, K.A., Pullan, A.J., Hunter, P.J. Modeling myocardial excitation wavefront propagation in ventricles by

finite element solution of an eikonal equation. First Joint Meeting of BMES and IEEE/EMBS (Annual BMES

conference and 21st Annual IEEE/EMBS conference), 192, Atlanta, USA, 13-16 October 1999.

127. Hedley, W.J., Nielsen, P.M.F., Hunter, P.J. An XML language for describing biological models and data. 4th

annual Hilton Head workshop, Computational modeling of biological systems: from gene to organ, Hilton Head

Island, 23-27 February 2000.

128. Tawhai, M.H., Hunter, P.J. Water and heat transfer in a mathematical model of the human lungs. Proceedings of

ANZIAM 2000, 36th Applied Mathematics Conference, February 2000.

129. Nickerson, D.P., Hunter, P.J. Cardiac cell modeling. ANZIAM 2000 – 36th Applied Mathematics Conference,

Waitangi, 8-12 February 2000.

130. Tawhai, M., Hunter, P.J. Water vapour and heat transfer in a mathematical model of the human lungs. Proceedings

of ANZIAM 2000 Conference, Waitangi, New Zealand, 8-12 February 2000.

131. Le Grice, I.J., Young, A.A., Hunter, P.J., Smaill, B.H. New views of cardiac structure. International Society for

Heart Research, A1, Louisville, KY, USA, 14-18 June 2000.

132. Hedley, W.J., Nielsen P. F., Hunter, P. An XML language for describing biological models and data. Proceedings

of the World Congress on Medical Physics and Bioengineering, Chicago, 23-28 July 2000.

133. Nickerson, D.P., Kohl, P., Smith, N.P., Hunter, P.J. Cardiac electro-mechanics: cell and tissue modelling.

Proceedings of the Biomedical Engineering Society (BMES) Annual Conference, Seattle, USA, 12-14 October 2000.

134. Hedley, W.J., Nielsen, P.M.F., Hunter, P.J. XML languages for describing biological models and data. BMES

2000 (Biomedical Engineering Society Annual Meeting), Seattle, 12-14 October 2000.

135. Hunter, P.J. Auckland whole heart model. Proceedings of the 2nd International Workshop on Computer Simulation

and Experimental Assessment of Electrical Cardiac Function, Lausanne, 4-5 December 2000.

136. Buist, M.L., Pullan, A.J., Hunter, P.J. Modelling heart activation. Physiological Society of New Zealand. Waiheke

Island, 4-6 December 2000.

137. Nickerson, D.P., Hunter, P.J. Cardiac electro-mechanics. Proceedings of PSNZ 2000 Conference, New Zealand,

Waiheke Island, 4-6 December 2000.

138. Tawhai, M., Hunter, P.J. An anatomically based three-dimensional model of the human lungs, applied to gas

mixing and water vapour and heat transfer. In Proc. of the 27th Annual Meeting of the Physiological Society of New

Zealand. 2000.

19

139. Hedley, W.J., Nelson, M.R., Nielsen P. F., Bullivant, D. P., Hunter, P.J. XML languages for describing biological

models and data. Proceedings of PSNZ 2000 Conference, Waiheke Island, New Zealand, 4-6 December 2000.

140. Tawhai, M.H., Hunter, P.J. An anatomically based three-dimensional model of the human lungs, applied to gas

mixing and water and heat transfer. Proceedings of PSNZ 2000 Conference, Waiheke Island, New Zealand, 4-6

December 2000.

141. Hunter, P.J., Nielsen, P.M.F., Hedley, W.J. XML in cell biology. 1st International Conference on Computational

Cell Biology, edited by Borisy, G., Jacobson, K., Bray, D., Lederer, J., Ferrell, J., Lippincott-Schwartz, J., Iyengar,

R., Lenox, 4-6 March 2001.

142. Tawhai, M., Hunter, P.J. Developing a lung physiome. Short course on integrative models of respiration, Los

Angeles, USA, 10-11 June 2001.

143. Tawhai, M.H., Burrowes, K.S., Hunter, P.J. Integrated anatomically- and biophysically-based modelling of the

lungs: airways, circulation, and soft-tissue mechanics. XXXIV International Congress of Physiological Sciences,

20(1), Christchurch, New Zealand, August 2001.

144. Tawhai, M.H., Hunter, P.J. Gas mixing in an anatomically-based mathematical model of the human lungs, with

variable flow distribution. Proceedings of the XXXIV International Congress of Physiological Sciences, 20(1),

Christchurch, New Zealand, August 2001.

145. Smith, N.P., Mulquiney, P.J., Crampin, E.J., Hunter, P.J. Modelling cardiac ischemia (poster), 34th International

Congress of Physiological Sciences Satellite Conference: Integrated Biology of the Heart, 76, Queenstown, New

Zealand, 19-22 August 2001.

146. Howatson-Tawhai, M., Hunter, P.J. Simulating gas transport in an anatomically-based mathematical model of the

human lungs. American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. 50:89-90.

2001.

147. Howatson-Tawhai, M., Hunter, P.J. Water and heat transfer in an anatomically-based mathematical model of the

human lungs. American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. 50:803-804.

2001.

148. Buist, M.L., Hunter, P.J., Pullan, A.J. Simulating body surface potentials: a direct or indirect approach. Proc. of

the Physiological Society of New Zealand, Satellite meeting of the 34th International Congress of Physiological

Sciences. 20(1):28. Queenstown, 20-22 August 2001.

149. Mithraratne, P., Bullivant, D., Pullan, A.J., Hunter, P.J. An anatomically based model of the human circulatory

system. XXXIV International Congress of Physiological Sciences, Christchurch, New Zealand, 26-31 August, 2001.

150. Bullivant, D.P., Cuellar, A.A., Hedley, W.J., Hunter, P.J., Nelson, M.R., Nielsen, P.M.F. Languages for the

definition and exchange of biological models. Proceedings of the Physiological Society of New Zealand, Satellite

meeting of the 34th World Congress of the International Union of Physiological Sciences, 29, Queenstown, 20-22

August 2001.

151. Fernandez, J.W., Blyth, P., Thrupp, S., Anderson, I.A., Hunter, P.J. Generic femur customisation using the host

mesh technique. Proceedings of the Physiological Society of New Zealand, Satellite meeting of the 34th World

Congress of the International Union of Physiological Sciences, 48, Queenstown, 20-22 August 2001.

152. Garny, A., Hunter, P.J., Kohl, P., Noble, D. Towards an anatomico-physiological computer model of the right

atrium. Proceedings of the Physiological Society of New Zealand, Satellite meeting of the 34 th World Congress of

the International Union of Physiological Sciences, 51, Queenstown, 20-22 August 2001.

153. Hooks, D.A., Tomlinson, K.A., Le Grice, I.J., Pullan, A.J., Smaill, B.H., Hunter, P.J. Influence of the

discontinuous laminar organisation of cardiomyocytes on electrical propagation and response to cardioversion.

Procs. of the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress of the

International Union of Physiological Sciences, Editors: Butt, A.G., Loiselle, D.S., 20(1):48, Queenstown, 20-22

August 2001.

154. Mithraratne, P., Bullivant, D., Hunter, P.J. An anatomically based model of the human circulatory system.

Proceedings of the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress of the

International Union of Physiological Sciences, 76, Queenstown, 20-22 August 2001.

155. Mulquiney, P.J., Smith, N.P., Clarke, K., Hunter, P.J. Modelling cellular physiology in the normal and ischaemic

ventricular myocyte. Proceedings of the Physiological Society of New Zealand, Satellite meeting of the 34th World

Congress of the International Union of Physiological Sciences, 78, Queenstown, 20-22 August 2001.

156. Nickerson, D.P., Hunter, P.J. Modelling cardiac cellular electro-mechanics. Proceedings of the Physiological

Society of New Zealand, Satellite meeting of the 34th World Congress of the International Union of Physiological

Sciences, 82, Queenstown, 20-22 August 2001.

157. Stevens, C., Hunter, P.J. Computational myocardial infarct modelling. Proceedings of the Physiological Society of

New Zealand, Satellite meeting of the 34th World Congress of the International Union of Physiological Sciences, 95,

Queenstown, 20-22 August 2001.

20

158. Stevens, C., Hunter, P.J. Investigation of feedback mechanisms for optimal fibrous-sheet structure with a

computational model of the heart. American Society of Mechanical Engineers, Bioengineering Division

(Publication), BED 50:801-802, 2001.

159. Tawhai, M.H., Hunter, P.J. Gas mixing in an anatomically based mathematical model of the human lungs, with

gas exchange and variable flow distribution. Proceedings of the Physiological Society of New Zealand, Satellite

meeting of the 34th World Congress of the International Union of Physiological Sciences, 99, Queenstown, 20-22

August 2001.

160. Thrupp, S.F., Hedley, W.J., Nielsen, P.M.F., Bullivant, D.P., Hunter, P.J. Development of a finite element model

of the human musculoskeletal system and an XML-based language for describing anatomy (AnatML). Proceedings

of the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress of the International Union

of Physiological Sciences, 102, Queenstown, 20-22 August 2001.

161. Tomlinson, K.A., Hunter, P.J., Pullan, A.J. Myocardial excitation simulation from finite element solution of an

eikonal equation. Procs. of the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress

of the International Union of Physiological Sciences, 103, Queenstown, 20-22 August 2001.

162. Nickerson, D.P., Smith, N.P., Nash, M.P., Hunter, P.J. Modelling cardiac tissue electro-mechanics. Proceedings of

the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress of the International Union of

Physiological Sciences, 83, Queenstown, 20-22 August 2001.

163. Hooks, D.A., Tomlinson, K.A., Le Grice, I.J., Pullan, A.J., Smaill, B.H., Hunter, P.J. Influence of the

discontinuous laminar organisation of cardiomyocytes on electrical propagation and response to cardioversion.

Procs. of the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress of the

International Union of Physiological Sciences, 20:60, Christchurch, 26-31 August 2001.

164. Fernandez, J.W., Blyth, P., Thrupp, S., Anderson, I.A., Hunter, P.J. Generic femur customization using the host

mesh technique. 34th International Congress of Physiological Science, Christchurch, New Zealand, 26-31 August

2001.

165. Nickerson, D.P., Smith, N.P., Nash, M.P., Hunter, P.J. Modelling cardiac tissue electro-mechanics. Proceedings of

the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress of the International Union of

Physiological Sciences, 20:66, Christchurch, 26-31 August 2001.

166. Stevens, C., Nash, M.P., Hunter, P.J. Modelling cardiac ventricular mechanics. Proceedings of the Physiological

Society of New Zealand, 34th International Congress of Physiological Sciences, 20:79, Christchurch, New Zealand,

26-31 August 2001.

167. Hunter, P.J., Bullivant, D.P., Nielsen, P.M.F., Pullan, A.J. The physiome project: progress and plans. 34th

International Congress of Physiological Sciences, Proceedings of the Physiological Society of New Zealand,

20(1):20, Christchurch, 26-31 August 2001.

168. Smith, N.P., Mulquiney, P.J., Noble, D., Hunter, P.J. A biochemical basis for a mathematical model of cardiac

mechanics. Proceedings of the Physiological Society of New Zealand, Satellite meeting of the 34th World Congress

of the International Union of Physiological Sciences, 93, Queenstown, 20-22 August 2001.

169. Stevens, C., Nash, M.P., Hunter, P.J. Modelling cardiac ventricular mechanics. Proceedings of the Physiological

Society of New Zealand, Satellite meeting of the 34th World Congress of the International Union of Physiological

Sciences, 96, Queenstown, 20-22 August 2001.

170. Tawhai, M.H., Burrowes, K.S., Hunter, P.J. Integrated anatomically- and biophysically-based modelling of the

lungs: airways, circulation, and soft-tissue mechanics. Proceedings of the Physiological Society of New Zealand,

Satellite meeting of the 34th World Congress of the International Union of Physiological Sciences, 100, Queenstown,

20-22 August 2001.

171. Smaill, B.H., Le Grice, I.J., Hooks, D.A., Young, A.A., Hunter, P.J. Cardiac structure and function: measurement

and models. International Society for Heart Research, Brisbane, September 2001.

172. Hunter, P.J., Nielsen, P.M.F., Bullivant, D. The IUPS Physiome Project. Symposium on In Silico Simulation of

Biological Processes, Editors: Bock, G., Goode, J.A., John Wiley & Sons Ltd, 247:207-221, Novartis FDN, London,

England, 27-29 November 2001.

173. Blyth, P., Fernandez, P., Thrupp, J.W., Anderson, I.A., Hunter, P.J. Utilisation of VRML to access a cubic finite

element model of the lower limb to teach anatomy and simulate dynamic hip screw placement. 4th Visible Human

Conference, Keystone, CO, USA, 2002.

174. Bullivant, D.P., Cuellar, A.A., Hedley, W.J., Hunter, P.J., Nelson, M.R., Nielsen, P.F. Languages for the definition

and exchange of biological models. Cardiovascular Symposium: From Bench to Bedside, Auckland, 3 May 2002.

175. Nielsen, P.M.F., Hedley, W.J., Cuellar, A.A., Bullivant, D.P., Nelson, M.R., Hunter, P.J. CellML: A language for

the definition and exchange of biological models. In Silico Biology and Bioinformatics and Genome research

Conferences, San Diego, 2-5 June 2002.

21

176. Nielsen, P.F., Hedley, W.J., Cuellar, A.A., Bullivant, D.P., Nelson, M.R., Hunter, P.J. Embedding metadata in

XML-based biological modelling languages. In Silico Biology and Bioinformatics and Genome research

Conferences, San Diego, 2-5 June 2002.

177. Stevens, C., Buist, M.L., Tomlinson, K.A., Smith, N.P., Pullan, A.J., Hunter, P.J. New Developments in the

Auckland Heart Model. XXIX International Congress on Electrocardiology, (in International Journal of

Bioelectromagnetism, 4(2), Special Issue on Electrocardiology and Neurophysiology), Montreal, Canada, 2-5 July

2002.

178. Bullivant, D.P., Cuellar, A.A., Hedley, W.J., Hunter, P.J., Nelson, M.R., Nielsen, P.F. CellML: a language for the

definition and exchange of cellular models. 10th International Conference on Intelligent Systems for Molecular

Biology, Edmonton, 3-7 August 2002.

179. Tawhai, M.H., Hunter, P.J. Anatomically based models of gas flow and gas exchange in the human lungs.

Proceedings of the 4th World Congress of Biomechanics, Calgary, Canada, August 2002.

180. Fernandez, J.W., Blyth, P., Thrupp, S., Anderson, I.A., Hunter, P.J. Efficient finite element customisation of a

generic femur using the host mesh technique. 4th World Congress on Biomechanics, Calgary, 4-9 August 2002.

181. Smith, N.P., Stevens, C., Buist, M.L., Tomlinson, K.A., Pullan, A.J., Hunter, P.J. Framework for a Whole Heart

Model, Health Informatics NZ Conference Proceedings, 251-256, Auckland, 8-10 August 2002.

182. Tawhai, M.H., Rankin, N., Ryan, S.N., Hunter, P.J. Measurement and mathematical modelling of thermodynamics

within the intubated airway. Annual Meeting of the European Respiratory Society, Stockholm, Sweden, September

2002.

183. Tawhai, M.H., Hunter, P.J. Application of normalised phase III slope analysis for assessing small and large

airways contribution in pulmonary models. 24th Annual International Conference of the EMBS / Annual Fall

Meeting of the BMES), 2nd joint meeting of the IEEE EMBS-BMES, 1-3:1519-1520, Houston, TX, 23-26 October

2002.

184. Burrowes, K.S., Tawhai, M.H., Hunter, P.J. Anatomically based model of blood flow in the human pulmonary

microcirculation. In proceedings of the 4th World Congress of Biomechanics, Auckland 2002.

185. Mithraratne, P., Carden, G., Tawhai, M.H., Hunter, P.J. Finite element geometric models of the human lung and

diaphragm. Proceedings of the 4th World Congress of Biomechanics, 2002.

186. Malcolm, D., Kvistedal, Y., Hunter, P., Charette, P., Nielsen, P. Identification of the mechanical constitutive

properties of soft membranes. Engineering and Physical Sciences in Medicine, Rotorua, New Zealand, 10-14

November 2002.

187. Nielsen, P., Hunter, P., Cuellar, A., Bullivant, D., Hedley, W.J., Nelson, M.R. The CellML and CellML Metadata

standards for specifying and annotating biological models. Standards and Ontologies for Functional Genomics,

Hinxton, 17-20 November 2002.

188. Cuellar, A.A., Nielsen, P.M.F., Bullivant, D.P., Hunter, P.J. CellML 1.1 for the description of biological models.

The 29th Annual Meeting of the Physiological Society of New Zealand, Palmerston North, 4-6 December 2002.

189. Cuellar, A.A., Nielsen, P.F., Bullivant, D.P., Hunter, P.J. Embedding metadata in XML-based biological

modelling languages. The 29th Annual Meeting of the Physiological Society of New Zealand, Palmerston North, 4-6

December 2002.

190. Nielsen, P., Cuellar, A., Bullivant, D. CellML 1.1: A Standard for Biological Model Specification and Reuse. 3rd

International Conference on Systems Biology, Stockholm, 13-15 December 2002.

191. Garny, A., Hunter, P.J., Kohl, P., Noble, D. Anatomically and biophysically detailed computer model of rabbit

sino-atrial node pacemaking. Biophysical Journal, 82:454, 2002.

192. Nickerson, D., Hunter, P.J. Modelling cardiac electro-mechanics: from CellML to the whole heart. Modelling and

Control in Biomedical Systems, 47-50, 2003.

193. Nielsen, P.M.F., Cuellar, A.A., Bullivant, D., Hunter, P.J. CellML 1.1: A standard for specifying and annotating

biological models. 2nd International Symposium on Computational Cell Biology, Lenox, 23-25 March 2003.

194. Nielsen, P.M.F., Halstead, M.D.B., Cuellar, A.A., Lloyd, C., Lovell-Smith, M., Dunstan, M., Bullivant, D., Hunter,

P.J. Ontologies for describing biological processes. Formal Languages for Biological Processes, The Banbury

Center, Cold Spring Harbor Laboratory, 20-23 April 2003.

195. Nash, M.P., Stevens, C., Hunter, P.J. Electro-mechanics modeling of the heart. E-Drug Discovery Symposium,

Bioinformatics and Molecular Design Research Center, Seoul, Korea, 23 May 2003.

196. Nash, M.P., Stevens, C., Hunter, P.J. Cardiac tissue electro-mechanics. Korean Physiome Research Group

Meeting, PyeongChang, South Korea, 24 May 2003.

197. Nielsen, P.M.F., Halstead, M.D.B., Hunter, P.J. Ontologies for the Physiome Project. Fifth Bio-Pathways Meeting

at ISMB, Brisbane, 27-28 June 2003.

198. Nielsen, P.M.F., Halstead, M.D.B., Cuellar, A.A., Lloyd, C., Bullivant, D., Hunter, P.J. Development of cellular

ontologies. Modelling Cellular Function, Waiheke, 14-18 July 2003.

22

199. Lloyd, C., Nielsen, P.M.F., Hunter, P.J. CellML: the story so far. Modelling Cellular Function, Waiheke, 14-18

July 2003.

200. Halstead, M.D.B., Nielsen, P.M.F., Cuellar, A.A., Bullivant, D.P., Hunter, P.J. Evolution of CellML. Modelling

Cellular Function, Waiheke, 14-18 July 2003.

201. Cuellar, A.A., Nielsen, P.M.F., Bullivant, D.P., Hunter, P.J. CellML metadata: a method for adding context to

XML-based biological models. Modelling Cellular Function, Waiheke, 14-18 July 2003.

202. Nielsen, P.M.F., Halstead, M.D.B., Cuellar, A.A., Dunstan, M., Bullivant, D.P., Hunter, P.J. Ontologies in

CellML: A versatile method to describe cellular models. 11th International Conference on Intelligent Systems for

Molecular Biology, Brisbane, 29 June-3 July 2003.

203. Burrowes, K.S., Tawhai, M., Hunter, P.J. Computational modeling of human pulmonary blood flow. World

Congress on Medical Physics and Biomedical Engineering, Sydney, August 2003.

204. Malcolm, D.T.K., Donaldson, P.J., Kistler, J., Mathias, R.T., Hunter, P.J. Modelling the microcirculation in the

mammalian lens. World Congress on Medical Physics and Biomedical Engineering, Sydney, August 2003.

205. Bier, P.J., Hunter, P.J., Mallinson, G.D. Modelling the vocal tract. World Congress on Medical Physics and

Biomedical Engineering, 24 August 2003.

206. Fernandez, J., Vanessen, N., Pullan, A.J., Hunter, P.J. Computational modeling of the human musculo-skeletal

system. Proceedings of the International Society of Biomechanics World Congress, Dunedin, 6-11 July 2003.

207. Smith, N.P., Hunter, P.J. Modelling coronary blood flow and ventricular energetics. World Congress on Medical

Physics and Biomedical Engineering, IFMBE Proceedings, 24-29 August 2003.

208. Malcolm, D.T.K., Hunter, P.J., Donaldson, P., Kistler, J., Mathias, R.T. Modelling the circulation in the

mammalian lens. 5th IFAC Symposium on Modelling and Control in Biomedical Systems, Editors: Feng, D., Carson,

E.R., Pergamon-Elsevier Science Ltd., 105-107, Melbourne Australia, 21-23 August 2003.

209. Nickerson, D.P., Hunter, P.J. Modelling cardiac electro-mechanics: from CellML to the whole heart. 5th IFAC

Symposium on Modelling and Control in Biomedical Systems, Editors: Feng, D., Carson, E.R., Pergamon-Elsevier

Science Ltd., 47-50, Melbourne Australia, 21-23 August 2003.

210. Cuellar, A.A., Nielsen, P.F., Bullivant, D.P., Hunter, P.J. CellML 1.1 for the definition and exchange of biological

models. 5th IFAC Symposium on Modelling and Control in Biomedical Systems, Editors: Feng, D., Carson, E.R.,

Pergamon-Elsevier Science Ltd., 451-456, Melbourne, 21-23 August 2003.

211. Cuellar, A.A., Halstead, M.D.B., Nielsen, P.M.F., Dunstan, M., Bullivant, D.P., Hunter, P.J. The use of ontologies

in CellML to describe cellular models. World Congress on Medical Physics and Biomedical Engineering, Sydney,

24-29 August 2003.

212. Nickerson, D.P., Hunter, P.J. Cardiac electromechanics: from CellML to the whole heart. World Congress on

Medical Physics and Biomedical Engineering, Sydney, NSW, Australia, August 2003.

213. Trew, M.L., Hall, D., Bullivant, D.P., Hunter, P.J. A method for subdividing degenerate hexahedral finite

elements. 12th International Meshing Roundtable, Santa Fe, NM, USA, September, 2003.

214. Trew, M.L., Hunter, P.J. Computational Meshes for the IUPS Physiome Project. 12th International Meshing

Roundtable, Santa Fe, NM, USA, September 2003.

215. Garny, A., Hunter, P.J., Noble, D., Boyett, M.R., Kohl, P. Rabbit sino-atrial node modeling from single cell to

tissue structure. Annual International Conference of the IEEE Engineering in Medicine and Biology Proceedings,

1:28-31, 2003.

216. Stevens. C., Diebel, C.E., Malpas, S.C., Hunter, P.J. Applications of computational models in education. 25th

Annual International Conference of the IEEE-Engineering in Medicine and Biology Society, 25:3497-3498, Cancun,

Mexico, 17-21 September 2003.

217. Smaill, B.H., Le Grice, I.J., Hooks, D.A., Pullan, A.J., Caldwell, B.J., Hunter, P.J. Cardiac structure and electrical

activation: Models and measurement. Australian Physiological and Pharmacological Society 34:141-149, Sydney,

September 2003.

218. Blackett, S.A., Bullivant, D., Hunter, P.J. Free form deformation for biomedical applications. IEEE Visualisation,

19 October 2003.

219. Blyth, P., Anderson, I.A., Stott, S., Hunter, P.J. Operating in a virtual theatre: animated display. 4th APEC Science

Ministers Meeting (Innovation Showcase), 9-11 March 2004. Work subsequently profiled on TV1, Christchurch, 1-

12 March 2004.

220. Nickerson, D.P., Hunter, P.J. Modelling cardiac electro-mechanics: From CellML to the whole heart. Multiscale

Computational Modelling for Biomedical Research, San Diego, 25-27 March 2004.

221. Van Essen, N.L., Hunter, P.J., Clarke, R.D., Pullan, A.J., Anderson, I.A. Anatomically based modeling of the

human jaw and face. Advancing Diagnostic Approaches for TMJ Diseases/Disorders, The Third Scientific Meeting

of the TMJ Association, Bethesda, Maryland, USA, 6-7 May 2004.

23

222. Fernandez, J.W., Mithraratne, P., Thrupp, S., Tawhai, M, Hunter, P.J. Geometric fitting and customisation of

anatomically based cubic Hermite finite element volume meshes. Biomechanics and Modeling in Mechanobiology,

2(3), 2004.

223. Mithraratne, P., Carden, G., Tawhai, M., Hunter, P.J. Finite element geometric models of the human lung and

diaphragm. IV World Congress of Biomechanics, Calgary, AB, Canada, 4-9 August 2004.

224. Hedges, K.L., Tawhai, M.H., Hunter, P.J. Modelling ventilation distribution in an anatomically-based

mathematical model of the human airway tree. Proceedings of the 100th Annual Meeting of the American Thoracic

Society, Orlando, USA, 21-26 May 2004.

225. Hedges, K.L., Tawhai, M., Hunter, P.J. Ventilation distribution in the human lung: modeling flow in the

conduction airways. Proceedings of the 100th International Conference of the American Thoracic Society, Orlando,

FL, 21-26 May 2004.

226. Burrowes, K.S., Tawhai, M.H., Hunter, P.J. Modeling flow and cell distribution in the pulmonary

microcirculation. Proceedings of the 100th Annual Meeting of the American Thoracic Society, Orlando, FL, 21 May

2004.

227. Burrowes, K.S., Tawhai, M.H., Hunter, P.J. Modeling blood flow distribution through the human pulmonary

arterial and venous trees. Proceedings of the 100th Annual Meeting of the American Thoracic Society, Orlando, FL,

21 May 2004.

228. Schmid, H., Nash, M.P., Hunter, P.J. Sensitivity analysis of myocardial material parameters in orthotropic

constitutive laws. IUTAM Symposium on Mechanics of Biological Tissue, 27 June 2004.

229. Hunter, P.J., Schmid, H., Fernandez, J.W., Tawhai, M., Nielsen, P.M.F., Nash, M.P. Challenges in modeling soft

tissue mechanics. International Union of Theoretical and Applied Mechanics Symposium on Mechanics of

Biological Tissue, Graz, Austria, 27 June-2 July 2004.

230. Fernandez, J., Schmid, H., Hunter, P. A framework for soft tissue and musculo-skeletal modeling: clinical uses and

future challenges. IUTAM Symposium on Mechanics of Biological Tissue, Graz, Austria, 27 June-2 July 2004.

231. Schmid, H., Nash, M.P., Hunter, P.J. Sensitivity analysis of myocardial material parameters in orthotropic

constitutive laws. European Society of Biomechanics, 4 July 2004.

232. Nickerson D.P., Hunter P. J. Cardiac electro-mechanics: From CellML to the whole heart. Journal of Molecular

and Cellular Cardiology, 37(1):175, Jul 2004.

233. Nickerson, D.P., Hunter, P.J. Cardiac electro-mechanics: from CellML to the whole heart. 8th Annual Scientific

Sessions of the Latin American Section of the International Society for Heart Research, Journal of Molecular and

Cellular Cardiology, Academic Press Ltd., Elsevier Science Ltd., 37:175, Iguazu Falls, Argentina, 1-3 August 2004.

234. Nash, M.P., Nickerson, D.P., Remme, E., Hunter, P.J. The IUPS phsiome project and cardiac electromechanics

modeling. Korean Physiome Research Group Meeting, Seoul, South Korea, 24 August 2004.

235. Malcolm, D.T.K., Donaldson, P.J., Kistler, J., Hunter, P.J. The integrative biology of the lens: a computational

modeling approach. A focus on the lens: Integrating structure, function, differentiation and cataract, ICER Satellite

Meeting, Rotorua, New Zealand, 24-27 August 2004.

236. Nash, M.P., Nickerson, D.P., Remme, E.W., Hunter, P.J. Cardiac electromechanics modelling to study

arrhythmogenesis and pump failure. KAIST Industrial Mathematics Initiative, Daejeon, South Korea, 23 August

2004.

237. Reynolds, H.M., Smith, N.P., Hunter, P.J. Construction of an anatomically accurate geometric model of the

forearm and hand musculo-skeletal system. Annual BMES Conference and 26th Annual IEEE/EMBS Conference,

26(1-7):1829-1832, San Francisco, 1-5 September 2004.

238. Malcolm, D.T.K., Donaldson, P.J., Kistler, J, Hunter, P.J. A finite element model of the microcirculation in the

mammalian lens. BMES 2004 Meeting, 13 October 2004.

239. Tawhai, M., Nash, M.P., Hedges, K.L., Hunter, P.J. Modelling coupled soft-tissue mechanics and airflow in the

lung. BMES Annual Fall Meeting, Philadelphia, USA., 13-16 October 2004.

240. Schmid, H., Nash, M.P., Rajagopal, V., Young, A.A., Hunter, P.J. Implementation of physiologically meaningful

constitutive laws for myocardium. MedSciNZ Congress, Queenstown, New Zealand, 1-3 December 2004.

241. Nickerson, D.P., Hunter, P.J. Modelling cardiac electro-mechanics: a multiscale approach. Medical Sciences

Congress, Queenstown, 30 November-3 December 2004.

242. Nash, M.P., Hedges, K.L., Fernandez, J.W., Hunter, P.J., Tawhai, M. Modelling the breathing lung: soft tissue

deformation, contact mechanics, and ventilation distribution in anatomically-based models of the pulmonary system.

Proceedings of Physiological Society of New Zealand, MedSciNZ Congress, Queenstown, 1-3 December 2004.

243. Burrowes, K.S., Hunter, P.J., Tawhai, M.H. Evaluation of pulmonary blood flow heterogeneity via computational

modeling. Proceedings of the New Zealand Biomedical and Medical Societies Conference, Queenstown, December

2004.

24

244. Nash, M.P., Hedges, K.L., Fernandez, J., Hunter, P.J., Tawhai, M.H. Modelling the breathing lung: contact

mechanics and ventilation distribution in anatomically-based models of the pulmonary system. Proceedings of the

New Zealand Biomedical and Medical Societies Conference, Queenstown, December 2004.

245. Kvistedal, Y., Nielsen, P.M.F., Tawhai, M.H., Hunter, P.J. A robotics system for slicing and 3D imaging of lung

tissue. Proceedings of the New Zealand Biomedical and Medical Societies Conference, Queenstown, 30 November-

3 December 2004.

246. Burrowes, K.S., Tawhai, M.H., Nash, M.P., Hunter, P.J. CT-based computational models of coupled lung

mechanics and pulmonary blood flow. Experimental Biology 2005 Meeting / 35th International Congress of

Physiological Sciences, 4 March 2005.

247. Tawhai, M.H., Burrowes, K.S., McLennan, G., Hoffman, E.A., Hunter, P.J. Sensitivity of perfusion heterogeneity

revealed by CT-based models of the human lung and vascular trees. Proceedings of the Thoracic Society of

Australia and New Zealand Annual Meeting, Perth, Australia, 18-23 March 2005.

248. Cooling, M., Crampin, E.J., Hunter, P.J. Deadly signal transduction. IUPS Physiome Project Satellite Meeting,

Genome to Therapy, San Diego, 28-30 March 2005.

249. Kelly, D., Mackenzie, L., Hunter, P.J., Smaill, B.H., Saint, D. Gene expression of stretch activated channels and

mechano-electric feedback in the heart. http://www.aups.org.au/Proceedings/36/91-99/, AuPS/AHMRC Meeting,

Proceedings of the Australian Physiological Society, 36:91-99, Sydney 21-26 November 2005.

250. Nickerson, D.P., Hunter, P J. Modelling cardiac electro-mechanics: a multiscale approach. Satellite Meeting of the

35th International Congress of Physiological Sciences: In Silico Physiology: From Genome to Physiome, San

Diego, USA, 31 March-5 April 2005.

251. Burrowes, K.S., Tawhai, M.H., Nash, M.P., Hunter, P.J. CT-based computational models of coupled lung

mechanics and pulmonary blood flow. Proceedings of the International Union of Physiological Sciences, San Diego,

April 2005.

252. Nickerson, D.P., Hunter, P J. Modelling cardiac electro-mechanics: a multiscale approach. FASEB Journal,

Experimental Biology 2005/IUPS World Congress 2005, 19:A1319, San Diego, CA, USA, 2-6 April 2005.

253. Burrowes, K.S., Hunter, P.J., Tawhai, M.H. Closing the loop between medical imaging and computational

modeling of blood flow through the human pulmonary circulation. Proceedings of the 100th Annual Meeting of the

American Thoracic Society, San Diego, CA, May 2005.

254. Cooling, M., Crampin, E.J., Hunter, P.J. Deadly signal transduction. Auckland Bioengineering Insitute, 29 July

2005.

255. Fernandez, J.W., Hunter, P.J. An anatomically based patient-specific finite element model of patella articulation:

Towards a diagnostic tool. FASEB Journal, 19(5):A1572, 7 March 2005.

256. Blackett, S A, Bullivant, D P, Nickerson, D P, Hunter, P J. Multi-scale and multi-physics visualization. ACM

0SIGGRAPH 2005: The 32nd International Conference on Computer Graphics and Interactive Techniques, Los

Angeles, CA, USA, 31 July 2005.

257. Blackett, S.A., Bullivant, D., Hunter, P.J. Visualisation in multiscale bioengineering applications. 8th US National

Congress on Continuum Mechanics, Austin, TX, USA, 25-27 July 2005.

258. Pullan, A.J., Smith, N.P., Hunter, P.J. Computing the virtual human. Proceedings of the Health Informatics New

Zealand Conference, Auckland, New Zealand, 4-5 August 2005.

259. Fernandez, J.W., Schmid, H., Hunter, P.J. A framework for soft tissue and musculo-skeletal modelling: Clinical

uses and future challenges. IUTAM Proceedings, 2005.

260. Burrowes, K.S., Hunter, P.J., Tawhai, M.H. Evaluation of the effect of postural and gravitational variations on the

distribution of pulmonary blood flow via an image-based computational model. 27th Annual International

Conference of the IEEE-Engineering in Medicine and Biology Society, 6:6138-6140, Shanghai, China, 31 August-3

September 2005.

261. Kvistedal, Y., Tawhai, M.H., Hunter, P., Nielsen, P.M.F. High resolution 3D imaging of lung tissue using

structured light microscopy. 27th Annual International Conference of the IEEE-Engineering in Medicine and

Biology Society, 1:193-195, Shanghai, China, 31 August-3 September 2005.

262. Burrowes, K.S., Tawhai, M.H., Nash, M.P., Hunter, P.J. CT-based computational models of coupled lung

mechanics and pulmonary blood flow. FASEB Journal, 19(4):A635-A636, 2005.

263. Stevens, C., Blackett, S.A., Le Grice, I.J., Hunter, P.J. Internet applications for computational biology: the CMISS

web browser extension and its use in education. 27th Annual IEEE Engineering and Medicine in Biology Society

Conference, Shanghai, 31 August-3 September 2005.

264. Blackett, S.A., Bullivant, D., Stevens, C., Hunter, P.J. Open source software infrastructure for computational

biology and visualisation. 27th Annual International Conference of the IEEE Engineering in Medicine and Biology,

1:6079-6080, Shanghai, China, 31 August-3 September 2005.

265. Nickerson, D P, Hunter, P J. Using CellML in computational models of multiscale physiology. The 26th Annual

IEEE Engineering and Medicine in Biology Society Conference, Shanghai, China, September 2005.

25

266. Schmid, H., Nash, M.P., Walker, C.G., Sands, G.B., Pope, A.J., Le Grice, I.J., Young, A.A., Nielsen, P.M.F.,

Hunter, P.J. A framework for multi-scale modeling of the myocardium. In IFMBE Proceedings, Editors: Hozman,

J., Kneppo, P., 11:4201-4205, ISSN 1727-1983. 3rd European Medical & Biological Engineering Conference -

EMBEC´05, Prague, Czech Republic, 20-25 November 2005.

267. Nickerson, D P, Stevens, C, Hunter, P J. The Wellcome Trust heart physiome project. Medical Sciences Congress,

Queenstown, New Zealand, 27-30 November 2005.

268. Bogle, M.G.V., Hunter, P., Dunbar, P.R. T cells and dendritic cells take a random walk through lymph nodes.

Tissue Antigens, Blackwell Publishing, 66:402. 35th Annual Scientific Meeting of the Australasian Society for

Immunology / 14th International HLA and Immunogenetics Workshops, Melbourne, Australia, 29 November-2

December 2005.

269. Malcolm, D.T.K., Donaldson, P.J., Hunter, P.J. A computational model of the ocular lens. MedSciNZ,

Queenstown, 6-9 December 2005.

270. Cooling, M.T., Crampin, E.J., Hunter, P.J. Towards a mathematical model for the intracellular mechanisms of

calcineurin signalling in pathological cardiac hypertrophy. Medical Sciences Congress, Queenstown, New Zealand,

6-9 December 2005.

271. Schmid, H., Nash, M.P., Walker, C., Sands, G.B., Pope, A., LeGrice, I.J., Young, A.A., Nielsen, P., Hunter, P.J. A

framework for multi-scale modeling of the heart. Conference Proceedings EMBEC 2005 Prague, 3rd European

Medical and Engineering Conference, Czech Republic, 2005.

272. Schmid, H., Nash, M.P., Walker, C.G., Sands, G.B., Pope, A.J., Le Grice, I.J., Young, A.A., Hunter, P.J. A

framework for multi-scale modeling of the myocardium. MedSciNZ Congress, 6 December 2005.

273. Hedges, K.L., Hunter, P.J., Tawhai, M.H. Image based model of a breathing lung. Proc Annual Meeting of the

American Thoracic Society, American Journal of Respiratory and Critical Care Medicine, 3:A876, San Diego, CA,

May 2006.

274. Cooling, M.T., Crampin, E.J. Hunter, P.J. Calcineurin signalling in pathological cardiac hypertrophy. Wellcome

Trust Heart Meeting, Oxford, UK, 3-4 July 2006.

275. Cooling, M.T., Crampin, E.J. Hunter, P.J. Calcineurin signalling in pathological cardiac hypertrophy. Gordon

Research Conference: Cardiac Regulatory Mechanisms, Boston, USA, 16-21 July 2006.

276. Schmid, H., Nash, M.P., McCormick, M.G., Walker, C.G., Hunter, P.J. Myocardial topology - an algorithm for

building anatomically realistic myocyte sheets. 5th World Congress of Biomechanics, Munich, Germany, 29 July-4

August 2006.

277. Schmid, H., Nash, M.P., Lin, W., Kirton, R.S., O’Callaghan, P.T., Le Grice, I.J., Young, A.A., Hunter, P.J.

Myocardial material parameter estimation: the influences of constitutive relation and experimental protocol. 5th

World Congress of Biomechanics, Journal of Biomechanics, 39(S1):S277, Munich, Germany, 29 July-4 August

2006.

278. Nickerson, D.P., Stevens, C., Nash, M.P., Hunter, P.J. Multiscale modeling of cardiac mechanics. 5th World

Congress of Biomechanics, Journal of Biomechanics, 39(S1):S405, Munich, Germany, 29 July-4 August 2006.

279. Schmid, H., Nash, M.P., McCormick, M.G., Walker, C.G., Hunter, P.J. An algorithm for building anatomically

realistic myocyte sheets. World Congress on Medical Physics and Biomedical Engineering, Seoul, South Korea,

August 2006.

280. Schmid, H., Nash, M.P., Lin, W., Kirton, R.S., O’Callaghan, P.T., Le Grice, I.J., Young, A.A., Hunter, P.J.

Myocardial material parameter estimation: the influences of constitutive relation and experimental protocol. World

Congress on Medical Physics and Biomedical Engineering, Seoul, South Korea, August 2006.

281. Cooling, M.T., Crampin, E.J., Hunter, P.J. IP3 Signal Transduction Modelling. Queenstown Molecular Biology

Meeting, Queenstown, New Zealand, 29 August-1 September 2006.

282. Hunter, P.J., Crampin, E.J., Cooling, M.T. A framework for modelling cell signalling pathways within the

Physiome Project. Queenstown Molecular Biology Meeting, Queenstown, New Zealand, 29 August-1 September

2006.

283. Nickerson, D.P., Stevens, C., Halstead, M., Hunter, P.J., Nielsen, P.M.F. Toward a curated CellML model

repository. 28th IEEE Engineering in Medicine and Biology Conference, 4237-4240, New York, 30 August-3

September 2006.

284. Nickerson, D.P., Niederer, S.A., Stevens, C., Nash, M.P., Hunter, P.J. A computational model of cardiac

electromechanics. Proceedings of 28th IEEE EMBS Annual International Conference, 5311-5314, New York, USA,

30 August-3 September 2006.

285. Swan, A., Hunter, P.J., Tawhai, M. Pulmonary gas exchange in anatomically-based models of the lung. 10th

Oxford Conference on Modelling and Control of Breathing, Lake Louise, Canada, 19-24 September 2006.

286. Vaghefi, E., Malcolm, D.T.K., Hunter, P.J., Cannell, M.B., Donaldson, P.J., Jacobs, M.D. Modelling avascular

circulation in the ocular lens. Biomedical Engineering Society Annual Fall Meeting, 11 October 2006.

26

287. Malcolm, D.T.K., Donaldson, P.J., Hunter, P.J. A computational model of the microcirculation in the ocular lens.

MedSciNZ 2006, Rotorua, New Zealand, 28 November-1 December 2006.

288. Cooling, M.T., Crampin, E.J., Hunter, P.J. IP3 signal transduction modeling. International Conference of Systems

Biology, Yokohama, Japan, 2006.

289. Mithraratne, P., Hunter, P.J. Customisation of anatomically based musculoskeletal structures. Proceedings of the

XV International Conference on Mechanics in Medicine and Biology (ICMMB 2006), Editor: Ng, N.Y., 467-470,

Singapore, 6–8 December 2006.

290. Hunter, P.J., Tawhai, M.H. Biomechanics of the heart and lungs: challenges in multi-scale modelling. Journal of

Biomechanics, 39(1), 2006.

291. Hedges, K.L., Hunter, P.J., Tawhai, M.H. Coupled mechanics and airflow of a human lung. Journal of

Biomechanics, 39(1), 2006.

292. Hung, A.P.L., Mithraratne, P., Hunter, P.J. Multilayer soft tissue continuum model: towards realistic simulation of

facial expression. ICMIBE, Proceedings of World Academy of Science, Engineering and Technology, 54, Paris,

France, 2007.

293. Swan, A.J., Hunter, P.J., Tawhai, M.H. Computational modelling of regional gas exchange in the lung.

Proceedings of the Annual Meeting of the ANZSRS, Auckland, New Zealand, March 2007.

294. Cooling, M.T., Crampin, E.J., Hunter, P.J. Modularisation of Signal Transduction Models. International CellML

Workshop, Auckland, New Zealand, 4-5 April 2007.

295. Nordsletten, D., Hunter, P.J., Smith, N. Talk: Transient fluid dynamics in the porcine ventricle: a precursor to

coupled fluid-solid mechanics in the heart. Institute for Computational Fluid Dynamics (ICFD), Numerical methods

for fluid dynamics, University of Reading, UK, April 2007.

296. Swan, A.J., Hunter, P.J., Tawhai, M.H. Investigating regional gas exchange in the lung using anatomically-based

models. Proceedings of the Annual Meeting of the American Thoracic Society, San Francisco, CA, USA, May 2007.

297. Dong, Y., Bhattacharyya, D., Hunter, P.J. Numerical modeling of mechanical behavior of

polypropylene/organoclay nanocomposites using representative volume element (RVE). Symposium O: Frontiers in

Computational Materials Science, International Conference on Materials for Advanced Technologies, 1-6 July

2007.

298. Dong, Y., Bhattacharyya, D., Hunter, P.J. Optimisation of property enhancement of polypropylene/organoclay

nanocomposites. 16th International Conference on Composite Materials, CD-Rom, Kyoto, Japan, 8-13 July 2007.

299. Bhattacharyya, D., Dong, Y., Hunter, P.J. Formulation, processing and numerical modeling of polypropylene/clay

nanocomposites. CD-Rom Proceedings of 15th International Conference on Composites or Nano Engineering,

Editor: Hui, D., ICCE, Haikou, Hainan Island, China, 15-21 July 2007.

300. Jor, J.W.Y., Nash, M.P., Nielsen, P.M.F., Hunter, P.J. Development of a 3D biomechanical model of human skin:

using a discrete fibre approach. Proceedings of the 29th Annual International Conference of the IEEE Engineering in

Medicine and Biology, 6641-6644, Lyon, France, 22-26 August 2007.

301. Dong, Y., Bhattacharyya, D., Hunter, P.J. A novel numerical approach based on morphological image analysis to

predict mechanical properties of polypropylene/clay nanocomposites. Proceedings of CANCOM 2007, Editor:

McKay, S., 1-12, 14-18 September 2007.

302. Nordsletten, D., Kay, D., Hunter, P.J., Smith, N. Talk: Analysis of cardiac energetics using a model of coupled

fluid-solid mechanics. BMES, Los Angeles, CA, USA, September 2007.

303. Cooling, M., Crampin, E.J., Hunter, P.J. Receptor significance for IP3 transients in the atrial cardiac myocyte.

2007 BMES Annual Fall Meeting, Los Angeles, CA, USA (talk), 26-29 September 2007.

304. Che, S.H.C., Mithraratne, P., Phillips, J.R., Jacobs, M.D., Hunter, P.J. Numerical model of fluid movement in the

crystalline lens during accommodation. BMES 2007 Annual Fall Meeting, Los Angeles, USA, 26-29 September

2007.

305. Cooling, M.T., Hunter, P.J., Crampin, E.J. Calcineurina activation: insights from kinetic modelling. Biomedical

Engineering Society Annual Fall Meeting, Los Angeles, CA, USA (poster), 26-29 September 2007.

306. Jor, J.W.Y., Nash, M.P., Nielsen, P.M.F., Hunter, P.J. Development of a 3D biomechanical model of human skin:

using a discrete fibre approach. BMES Annual Fall Meeting, Los Angeles, USA, September 2007.

307. Lawson, J.R., Britten, R., Crampin, E.J., Halstead, M., Hunter, P.J., Nielsen, P.F. CellML: Cellml.org, tools and

community. ICSB 2007, Long Beach, CA, USA (poster), 1-6 Oct 2007.

308. Cooling, M.T., Hunter, P.J., Crampin, E.J. Modeling NFAT cycling sensitivity in the cardiac myocyte.

International Conference of Systems Biology, Long Beach, CA, USA (poster), 1-6 October 2007.

309. Cooling, M.T., Hunter, P.J., Crampin, E.J. Modelling IP3 transients in the cardiac myocyte. Biomedical

Engineering Society Annual Fall Meeting, Los Angeles, USA, 2007.

310. Hunter, P.J. The IUPS Physiome Project. 7th IEEE International Conference on Computer and Information

Technology Proceedings, Editors: Miyazaki, T., Paik, I., Wei, D. ̧4-5, Aizu-Wakamatsu City, Japan, 16-19 October

2007.

27

311. Mithraratne P., Cox, S.L., Hunter, P.J, Smith, N.P. Computational ergonomics: Using an anatomical model of the

lower limbs to analyse sitting. BMES 2007 Annual Fall Meeting, Los Angeles, USA, 26-29 September, 2007.

312. Hunter, P.J. Heart modeling, computational physiology and the IUPS Physiome Project. 26th International

Conference on Conceptual Modelling Editors: Parent, C., Schewe, K.D., Storey, V.C., Thalheim, B., 4801:21,

Auckland, New Zealand, 5-9 November 2007.

313. Cooling, M.T., Hunter, P.J., Crampin, E.J. Modelling IP3 / Calcineurin / NFAT pathways in cardiac myocytes. NZ

Medical Sciences Congress, Queenstown, New Zealand (talk), 27-30 November 2007.

314. Cooling, M.T., Crampin, E.J., Hunter, P.J. Calcineurin activation: Insights from kinetic modeling. Crosstalk

Signal Transduction Symposium, Auckland, New Zealand, 2007.

315. Cooling, M.T., Crampin, E.J., Hunter, P.J. Modelling IP3 / Calcineurin / NFAT pathways in cardiac myocytes.

Maurice Wilkins Centre Symposium, Auckland, New Zealand (talk), 2007.

316. Kim, N., Cooper, P.J., Cannel, M.B., Hunter, P.J. Interventricular and transmural heterogeneity of action potential

in the rat heart. XIII World Congress on Cardiac Pacing and Electrophysiology, 2 December 2007.

317. Cooling, M.T., Crampin, E., Hunter, P.J. Insights from modular modeling with CellML. 13th International

Conference on Biomedical Engineering. Singapore, 2008.

318. Terkildsen, J., Niederer, S.A., Hunter, P.J., Smith, N.P., Crampin, E.J. Combining Models using CellML: Rat

Cardiac Excitation-Contraction Coupling as an Example. CellML Workshop, Auckland (talk), 26 March 2008.

319. Cooling, M.T., Hunter, P.J, Crampin, E.J. Modular CellML models with examples. International CellML

Workshop, Auckland, New Zealand (talk), 26 March 2008.

320. Nordsletten, D., Kay, D., Hunter, P.J., Smith, N. Talk: Analysis of Cardiac Energetics: Modelling fluid-solid

mechanics. Multi-scale Heart Modelling. Waiheke, New Zealand, March 2008.

321. Cooling, M., Hunter, P., Crampin, E.J. Modelling IP3 / Calcineurin / NFAT pathways in cardiac myocytes.

Workshop on Multi-scale Modelling of the Heart, Auckland (poster), 27-29 March 2008.

322. Hussan, J., Trew, M., Hunter, P.J. A piecewise phase space approximation for solving cardiac membrane models.

Workshop on Multi-scale Modelling of the Heart, Waiheke, New Zealand, 27-28 March 2008.

323. Shim, V., Mithraratne, P., Malcolm, D.T.K., Anderson, I.A., Hunter, P.J. Subject-specific 3D finite element model

for measuring joint stresses in the knee during the gait cycle. 5th Clare Valley Bone Meeting, 10, Adelaide, Australia,

30 March-3 April 2008.

324. Cooling, M., Hunter, P.J., Crampin, E.J. Modelling the IP3 / Calcineurin / NFAT Pathway in Cardiac Myocytes.

BioSysBio 2008, London, UK (poster), April 2008.

325. Zhang, H.Y., Wang, L.W., Hunter, P.J.., Shi, P.C. Meshfree framework for image-derived modeling. 5th IEEE

International Symposium on Biomedical Imaging: From nano to macro, 1449-1452, Paris, France, 14-17 May 2008.

326. Chiu, W, Tawhai, M.H., Hunter, PJ. A multi-scale model of airway impedance. Proceedings of Annual Meeting of

the American Thoracic Society, American Journal of Respiratory and Critical Care Medicine, A945, Toronto

Canada, May, 2008.

327. Swan, A.J., Hunter, P.J., Tawhai, M.H. Predicting regional variations in gas exchange with a computational

model. Proceedings of the Annual Meeting of the American Thoracic Society, A222, Toronto, Canada, May 2008.

328. Nielsen, P.M.F., Hunter, P.J. Distributing and maintaining models in CellML. 2008 SIAM Conference, Boston,

USA, 10-13 May 2008.

329. Nordsletten, D., Hunter, P.J., Kay, D., Smith, N. Talk: Coupled fluid-solid mechanics in the heart. European

Seminar on Coupled Problems. Jetrichovice, Czech Republic, June 2008.

330. Vaghefi, E., Hunter, P.J., Jacobs, M.D. 3D finite element modeling of avascular circulation in the ocular lens. 4th

Kuala Lumpur International Conference on Biomedical Engineering, Editors: AbuOsman, N.A., Ibrahim, F.,

WanAbas, W.A.B., AbdulRahman, H.S., Ting, H.N., 21:469-472, Kuala Lumpur, Malaysia, 25-28 June 2008.

331. Ho, H., Norris, S., Mithraratne, P., Hunter, P. 1D and 3D blood flow modelling for patient specific cerebral

vasculature and aneurysm. 16th ESB Congress, Oral Presentations, Journal of Biomechanics, 41(S1):S8, 7th July

2008.

332. Schmid, H., Yang, Y.K., Ashton, J., Ehret, A.E., Krittian, S., Nash, M.P., Hunter, P.J., Itskov, M. Investigations of

invariant based constitutive laws for modeling myocardial mechanics. XXII International Congress of Theoretical

and Applied Mechanics, Adelaide, Australia, August 2008.

333. Cooling, M.T., Hunter, P.J., Crampin, E.J. Ca signaling in hypertrophic pathways. Crosstalk Symposium,

Auckland, New Zealand, 2008.

334. Hussan, J., Trew, M.L., Hunter, P.J. A phase space approximation method for the efficient solution of cardiac

membrane models. SIAM Conference on Life Sciences, Montreal, Quebec, Canada, 4-7 August 2008.

335. Hussan, J.R., Trew, M.L., Hunter, P.J. Efficient solutions of cardiac membrane models using novel unsupervised

clustering algorithm. Proceedings of the 30th Annual International Conference of the IEEE EMBS, 5910-5913,

Vancouver, Canada, 20-24 August 2008.

28

336. Hussan, J., Trew, M., Hunter, P. Efficient solutions of cardiac membrane models using novel unsupervised

clustering algorithm. 30th Annual International Conference of the IEEE EMBS, Vancouver, Canada, 20-24 August

2008.

337. Shim, V., Pitto, R.P., Streicher, R.M., Hunter, P.J., Anderson, I.A. Development and validation of patient specific

FE models of the hemi-pelvis generated from a sparse CT dataset. ASME Journal of Biomechanical Engineering,

130(5), Article number 051010, 2008.

338. Terkildsen, J.R., Lloyd, C.M., Cooling, M.T., Nielsen, P.M.F., Hunter, P.J. Building integrated cardiac cell models

with CellML 1.1. Interagency Modeling and Analysis Group, Montreal, 2008.

339. Cooling, M., Hunter, P., Crampin, E.J. Modularity in CellML with Examples. (Cooling – invited seminar),

Newcastle University, UK.

340. Cooling, M.T., Hunter, P.J., Crampin, E.J. Insights from mathematical modeling with CellML. Queenstown

Molecular Biology Meeting, 2008.

341. Cooling, M.T., Hunter, P.J., Crampin, E.J. Systems biology applications with modular CellML. Biomedical

Engineering Society Annual Fall Meeting, 2008.

342. Jor, J.W.Y., Nash, M.P., Nielsen, P.M.F., Hunter, P.J. A structurally based model of skin mechanics. Engineering

and Physical Sciences in Medicine and Australian Biomedical Engineering Conference, Christchurch, New Zealand,

16-20 November 2008.

343. Jor, J.W.Y., Nash, M.P., Nielsen, P.M.F., Hunter, P.J. Investigating mechanical properties of skin with a

structurally-based model. Medical Sciences Congress (MedSciNZ), Proceedings of the Physiological Society of New

Zealand, 75, Queenstown, New Zealand, 25-28 November 2008.

344. Dong, Y., Bhattacharyya, D., Hunter, P.J. Experimental characterisation and object-oriented finite element

modeling of polypropylene/organoclay nanocomposites, Paper #442-N. 5th Asian-Australasian Conference on

Composite Materials, Hong Kong, China, 27-30 November 2006, Composites Science and Technology, Elsevier Sci

Ltd, 68:2864-2875, November 2008.

345. Schmid, H., Watton, P., McCormick, M., Lanir, Y., Ho, H., Lloyd, C., Hunter, P., Ehret, A., Itskov, M.

Computational modeling of cerebral aneurysm formation – framework for modeling the interaction between fluid

dynamics, signal transduction pathways and arterial wall mechanics. IFMBE proceedings, 22:1894-1898, 2008.

346. Jor, J.W.Y., Nash, M.P., Nielsen, P.M.F., Hunter, P.J. Estimating mechanical properties of skin using a

structurally-based model. 13th International Conference on Biomedical Engineering (ICBME), Singapore, 3-6

December 2008.

347. Nickerson, D.P., Buist, M.L., Hunter, P.J. Using physiome standards in the creation, development and application

of multiscale and multiphysics physiological models. Journal of Phyiological Sciences, Springer, Tokyo, 59:308,

January 2009.

348. Ho, H., Sands, G., Schmid, H., Mithraratne, K., Mallinson, G., Hunter, P. A hybrid 1D and 3D approach to

hemodynamics modelling for a patient-specific cerebral vasculature and aneurysm. 12th International Conference on

Medical Image Computing and Computer-Assisted Intervention (MICCAI 2009), Editors: Yang, G.Z., Hawkes, D.,

Rueckert, D., Nobel, A., Taylor, C., 5762:323-330, Imperial Coll, London, England, 20-24 September 2009.

349. Jor, J., Hunter, P.J., Nash, M.P., Nielsen, P.M.F. Estimating material parameters of skin undergoing multiaxial

deformation using a mathematical model. Journal of Phyiological Sciences, Springer, Tokyo, 59:352, January 2009.

350. Mithraratne, P., Shim, V., Anderson, I.A., Hunter, P.J. Knee contact forces during gait: Part 1: Joint kinematics

and muscle forces. 4th Asian Pacific Conference on Biomechanics, Christchurch, New Zealand, 168-169, 14-17

April 2009.

351. Shim, V., Mithraratne, P., Anderson, I.A., Hunter, P.J. Knee contact forces during gait: Part 2: Finite element

analysis of tibio-femoral articulation. 4th Asian Pacific Conference on Biomechanics, Christchurch, New Zealand,

226-227, 14-17 April 2009.

352. Swan, A.J., Burrowes, K.S., Hunter, P.J., Tawhai, M. Quantifying the contributions of anatomical structure and

posture-dependent tissue deformation to regional distributions of V, Q, and V/Q. The American Thoracic Society

International Conference, A6026, San Diego, USA, May 2009.

353. Che, S.H.C., Mithraratne, P., Hunter, P.J. Construction of an anatomically based finite element model of the

human head. ICMIBE 2009, Proceedings of World Academy of Science, Engineering and Technology, 54:54-58,

Paris, France, June 2009.

354. Nordsletten, D., McCormick, M., Kilner, P., Hunter, P.J., Kay, D., Smith, N. Talk: Monolithic Fluid-Solid

Coupling and Applications in the Left Ventricle. International Conference on Mathematical and Computational

Biomedical Engineering. Swansea, UK, June 2009

355. Rajagopal, V., Theakston, E., Dilshan, I., O’Sullivan, M.J., Walker, C.G., Crampin, E.J., Soeller, C., Hunter, P.J.

Developing a realistic 3D model of ventricular cardiomyocytes. IUPS, Kyoto, Japan, 27 July-1 August 2009.

29

356. Mithraratne, K., Lavrijsen, T., Hunter, P.J. A coupled soft tissue continuum-transient blood flow model to

investigate the circulation in deep veins of the calf under compression. 13th International Conference on Biomedical

Engineering (ICBME), Singapore, 3-6 December 2008, Editors: Lim, C.T., Goh, J.C.H., 23:1878-1882, 2009.

357. Jor, J.W.Y., Nash, M.P., Nielsen, P.M.F., Hunter, P.J. Quantitative characterization of collagen fibre orientation in

porcine skin. XXXVI International Congress of Physiological Sciences, Kyoto, Japan, August 2009.

358. Lloyd, C.M., Hunter, P.J., Nielsen, P.F. The CellML cycle. Journal of Physiological Sciences, 59:308, January

2009.

359. Tiwari, A., Lloyd, C.M., Ingram, J.R., Hunter, P.J. Computational modelling of ACTH-induced steroidgenesis.

Journal of Physiological Sciences, 59:352, January 2009.

360. Shim, V.B., Mithraratne, K, Anderson, I.A., Hunter, P.J. Simulating in-vivo knee kinetics and kinematics of tibio-

femoral articulation with a subject-specific finite element model. IFMBE Proceedings, 25:2315-2318, 2009.

361. Lu, X.B., Thorpe, W., Foster, K., Hunter, P. From experiments to articulatory motion – a three dimensional talking

head model. Proceedings of the 10th Annual Conference of the International Speech Communication Association,

72-75, Brighton, England, 6-10 September 2009.

362. Ho H, Mithraratne K, Mabotuwana T, Hunter P. A software tool for hemodynamics modelling in large

vasculatures. IFMBE Proceedings, 97-100, 2009.

363. Ho, H., Ladd, D., Holden, A., Hunter, P.J. Patient-specific haemodynamic analysis for proximal protection in

carotid angioplasty. Computational Biomechanics for Medicine IV Workshop in MICCAI 2009, Editors: Miller, K.,

Nielsen, P.M.F., 43-52, Springer 2010.

364. Hunter, P.J. The IUPS Physiome Project. Journal of Physiological Sciences, 59:46, January 2009.

365. Kim, N., Cannell, M.B., Hunter, P.J. The time course of calcium current between EPI and endo cardiomyocytes

contributes to the transmural heterogeneity of action potential. Journal of Physiological Sciences, 59:126, January

2009.

366. Terkildsen, J., Montani, J.P., Hunter, P.J. Implementing the Guyton large circulatory model in CellML. Journal of

Physiological Sciences, 59:262, January 2009.

367. Ho, H., Mithraratne, K., Hunter, P. A computational model for cerebral circulation and its application for

haemodynamic modelling in vascular surgeries. Journal of Physiological Sciences, 59:501, January 2009.

368. Hunter, P., Nielsen, P. Physiome / VPH Projects Tools (CellML Tutorial). Journal of Physiological Sciences,

59:118, January 2009.

369. Schmid, H., Cooling, M.T., Watton, P., Hunter, P., Itskov, M. Multi-scale modelling of aneurysm formation –

linking continuum mechanics and adaptation to signalling events. 2010 CellML Workshop. Auckland, 2010.

370. Cooling, M.T., Halystkyy, Y., Jones, N., Hunter, P. Leveraging BeSTGRID to power biomedical research. New

Zealand eResearch Symposium. Auckland, 2010.

371. Ho, H., Cooling, M.T., Hunter, P. Towards a multiscale integrative model of WSS-induced signalling pathways in

cerebral aneurysms. IFMBE Proceedings, 31:1159-1162, 2010.

372. Cooling, M.T., Hunter, P. Integrating nitric oxide signalling quantitative models: a proof-of-concept in CellML. 5th

International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, 2010.

373. Fonseca, C.G., Backhaus, M., Do Chung, J., Tao, W., Medrano-Gracia, P., Cowan, B.R., Hunter, P.J., Finn, J.P.,

Shivkumar, K., Lima, J.A.C., Bluemke, D.A., Kadish, A.H., Lee, D.C., Young, A.A. The cardiac atlas project:

rationale, design and procedures. Lecture notes in Computer Science (including subseries Lecture Notes in Artificial

Intelligence and Lecture Notes in Bioinformatics), 6364 LNCS:36-45, 2010.

374. Nickerson, D.P., Terkildsen, J., Hamilton, K., Hunter, P.J. Visualising multiscale models of the nephron.

Experimental Biology, April 2010.

375. Mithraratne, K., Hunter, A., Sagara, M., Hunter, P.J. An efficient heterogeneous continuum model to simulate

active contraction of facial soft tissue structures. IFMBE Proceedings, 31:1024-1027, 2010.

376. Wu, T., Mithraratne, K., Sagar, M., Hunter, P.J. Characterising facial tissue sliding using ultrasonography. IFMBE

Proceedings, 31:1566-1569, 2010.

377. Nickerson, D.P., Terkildsen, J., Hamilton, K., Hunter, P. Interacting with a multiscale renal nephron model. 6th

World Congress of Biomechanics, Singapore, 1-6 August 2010.

378. Ecabert, O., Hunter, P., Weese, J., Chapelle, D., Frangi, A., Delingette, H., Spaan, J., Hose, R., Razavi, R., Smith,

N. euHeart: Personalised and integrated cardiac care using patient-specific cardiovascular modelling. VPH2010

Conference, Brussels, 30 September-1 October 2010.

379. de Bono, B., Grenon, P., Stevens, R., Hunter, P. An ontology-based connectivity framework for the anatomical

integration of clinical data and physiology models. VPH2010 Conference, Brussels, 30 September-1 October 2010.

380. Nickerson, D., Terkildsen, J., Hamilton, K., Hunter, P.J. A tool for multiscale modelling of the nephron.

VPH2010, Brussels, Belgium, 30 September-1 October 2010.

30

381. Burger, A., Bisbal, J., de Bono, B., Davidson, D., Hunter, P., Sukno, F., Baldock, R. Towards standards-based

interoperability across volumetric data resources in the Virtual Physiological Human. VPH2010 Conference,

Brussels, 30 September-1 October 2010.

382. Testi, D., Larrabide, I., Clapworthy, G., Aylward, S., Frangi, A., Hunter, P., Viceconti, M. Multiscale visualisation

and interaction. VPH2010 Conference, Brussels, 30 September-1 October 2010.

383. Steghöfer, M., Omedas, P., Pashaei, A., Camara, O., Lamata, P., Smith, N., Britten, R., Christie, R., Sorby, H., Wu,

A., Hunter, P.J., Frangi, AF. Integration of a 3D visualization and modeling software into a workflow environment

for cardiac therapy planning applications. VPH2010 Conference, Brussels, 30 September-1 October 2010.

384. Nickerson, D.P., Terkildsen, J., Hamilton, K., Hunter, P. An interface for interacting with multiscale models of the

nephron. Medical Sciences Congress, Queenstown, New Zealand, 30 November-3 December 2010.

385. Terkildsen, J., Nickerson, D.P., Hamilton, K., Hunter, P. Mathematical modelling of the distal nephron. Medical

Sciences Congress, 1 December 2010.

386. Spence, C.J.T., Geoghegan, P.H., Lu, X.B., Jermy, M.C., Hunter, P.J., Cater, J.E. Stereoscopic particle image

velocimetry measurement of articulatory airflow for validation of a computer model of speech. 17th Australasian

Fluid Mechanics Conference, Editors: Mallinson, G.D., Cater, J.E., Auckland, New Zealand, 5-9 December 2010.

387. J Fernandez, V Shim, P Hunter, (2012), 'Cartilage degeneration is linked to subchondral bone remodelling: a

multiscale investigation', 18th Congress of the European Society of Biomechanics, Lisbon, Portugal, June 2012.

388. J Fernandez, V Shim, P Hunter (2012), ‘Integrating Degenerative Mechanisms in Bone and Cartilage: a Multiscale

Approach’, 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San

Diego, California, USA, August 2012.

389. V Shim, J Fernandez, T Besier, P Hunter, (2012), ‘Investigation of the role of crimps in collagen fibers on internal

stress in tendon with a microstructually based finite element model’, 34th Annual International Conference of the

IEEE Engineering in Medicine and Biology Society, San Diego, California, USA, August 2012.

390. Wang, V. Y., Hunter, P. J., Young, A. A., Nash, M. P., Hoogendoorn, C., Frangi, A. F., . . . Cowan, B. R. (2013).

Automated personalised human left ventricular FE models to investigate heart failure mechanics. Lecture Notes in

Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),

7746 LNCS, 307-316.

391. Mansi, T., Georgescu, B., Kamen, A., Comaniciu, D., Hussan, J., & Hunter, P. J. (2013). Data-driven reduction of

a cardiac myofilament model. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial

Intelligence and Lecture Notes in Bioinformatics), 7945 LNCS, 232-240.

392. Nickerson, D.P., Hamilton, K.L., & Hunter, P.J. (2013) Modelling Epithelial Transport. The 15th International

Conference on Biomedical Engineering. Singapore. Doi: 10.6084/m9.figshare.870447

393. N. Ebrahimi, G. Bogle, M. T. Cooling, P. J. Hunter (2015, 19 February) Towards a Multi-scale Systems Biology of

the Developing Heart. Presented at the 3rd Auckland Bioengineering Institute Research Forum, Auckland, New

Zealand.

394. N. Ebrahimi, G. Bogle, M. T. Cooling, P. J. Hunter (2014, 14-18 September) Towards a System Physiology of the

Looping Heart. Presented at the 15th International Conference on Systems Biology, Melbourne, Australia.

395. N. Ebrahimi, G. Bogle, M. T. Cooling, P. J. Hunter (2014, 25-27 August). Towards a Multi-scale Systems Biology

of the Looping Heart. Presented at the Medical Science Congress, Queenstown, New Zealand.

396. N. Ebrahimi, J. Hussan, M. T. Cooling, C. Bradley, P. J. Hunter (2014, 6-11 July). Modelling the Looping Phase of

Heart Growth. Presented at the 7th World Congress of Biomechanics, Boston, USA.

397. N. Ebrahimi, M. T. Cooling, P. J. Hunter (2014, 14-15 April) Lessons from annotating the Notch

pathway. Presented at the 8th International CellML Workshop, Waiheke Island, Auckland, New Zealand.

398. N. Ebrahimi, M. T. Cooling, P. J. Hunter (2014, 21 February) Identification of Therapeutic Targets for

Developmental Heart Diseases. Presented at the 2nd Auckland Bioengineering Institute Research Forum, Auckland,

New Zealand.

399. Ebrahimi, N; Bogle, G; Bradley, C. P; Cooling, M.T; Hunter, P. J. ‘Towards a Computational Model of Regulatory

Networks Dictating Cardiac Morphogenesis’, Biological Cell Information Processing Workshop of the 14th

International Conference of Unconventional Computation and Natural Computation, Auckland, NZ, 2015.

400. Ebrahimi, N; Bogle, G; Bradley C.P; Cooling, M.T; Hunter, P.J. 'Towards a Multi-scale Systems Biology Model of

the Developing Heart'. 11th International Conference on Pathways, Networks, and Systems Medicine, Crete, GR,

2015.

401. Zivaljevic A, Atalag K, Warren J, Cooling MT, Nickerson DP and Hunter PJ. Annotation of clinical datasets using

openEHR Archetypes as a solution for data access issues faced in biomedical projects, Health Informatics NZ, 2015

[Awarded Best Student Paper].

402. Kalbasi Khoramdashti, R., Atalag, K., Nickerson., & Hunter, P. (2016). Towards Enhanced Computational

Physiology Through Semantically Linked Health Information. In Health Informatics New Zealand. Auckland, New

Zealand. Retrieved from http://www.hinz.org.nz/page/2016HINZConf

31

403. Afshar, N., Nickerson, D., Hunter, P. J., & Suresh, V. (2016). Computational modelling of glucose uptake in

enterocytes using CellML. In New Zealand Medical Sciences Congress. Nelson. Retrieved from

http://www.queenstownresearchweek.org/medsci/

404. Nickerson D, Hunter P. Discoverable, Reproducible, and Reusable Biosimulation Models. Annual Meeting of the

American-Society-for-Pharmacology-and-Experimental-Therapeutics (ASPET) at Experimental Biology Meeting,

Chicago, IL, 22 Apr 2017 - 26 Apr 2017. FASEB JOURNAL. FEDERATION AMER SOC EXP BIOL. 31: 1 page.

01 Apr 2017

405. Yu H, Ho H, Bartlett A, Hunter P. Modelling respiration induced torso deformation using a mesh fitting algorithm.

ACCV 2016, Taipei, Taiwan, 20 Nov 2016 - 24 Nov 2016. Lecture Notes in Computer Science: Computer Vision –

ACCV 2016 Workshops. Springer Verlag. 10117: 625-634 (10 pages). 2017

Theses and Technical Reports 1. Hunter, P.J. Numerical solution of arterial blood flow. M.E. Thesis. University of Auckland, 1972.

2. Hunter, P. J. Finite element analysis of cardiac muscle mechanics. D.Phil.Thesis, University of Oxford, 1975.

3. Hunter, P.J., Nielsen, P.M.F. Stress analysis in bone: A comparison of beam theory and finite element solution of the

equations of linear elasticity. T.A.M. Department report, University of Auckland, 1981.

4. O’Sullivan, M.J., Hunter, P.J., Penney, R.K., Clarke, D.J., Campbell, D.G. A mathematical model of the upper

Waitemata harbour estuary. School of Engineering Report #292, September 1982.

5. Hunter, P.J., Nielsen, P.M.F., Smaill, B.H. Biaxial mechanical testing of membrane biomaterials. Report to Hancock

Extracorporeal, Inc. Anaheim, CA., USA, 1985.

6. Hunter, P.J., Nielsen P.M.F., Shacklock, A.J., Smaill, B.H. Biaxial mechanical testing of Biomer and TLC. Report to

Hancock Extracorporeal Incorporated, Anaheim, California, USA, 1987.

7. Hunter, P.J. Virtual studio project. Stage I: Feasibility study Report for Television New Zealand, 31 March 1994.

8. Hunter, P.J. Modelling of bones using X-ray images Report for Meat Industry Research Institute of New Zealand

(MIRINZ), 28 June 1995.

9. Hunter, P.J., Arts, T. Tissue remodelling with micro-structurally based material laws Report to the Netherlands

Organisation for Scientific Research. October 1996

10. Hunter, P.J. NZ Knowledge Base in Biomedical Engineering. Report for MoRST. June 1996.

11. Hunter, P.J. Review of Information Technology at the University of Auckland. Report commissioned by the Vice-

Chancellor and presented to the University Senate in August 2000.

12. Hunter, P.J. The Physiome Project. Progress and Plans. Annual Report by the Chair of the IUPS Physiome

Commission of the International Union of Physiological Sciences. April 2000 and April 2001.

13. Hunter, P.J. Chemistry Dept Reference Group Report. March 2002

14. Trew, M., Hall, D., Bullivant, D., Hunter, P.J. A Method for Generating Finite Element Hosted Computational Grids

in Biological Organs. Bioengineering Institute Report MLT302, 1-8, The University of Auckland, May 2003.

Patents 1. Hunter, P.J., Nielsen, P.M.F., Bullivant, D.P., Sagar, M, Charette, P.G., LaFontaine, S. Basic functions of three-

dimensional models for compression, transformation and streaming. US 6,486,881. 20 June 2001.

2. Hunter, P.J., Nielsen, P.M.F., Bullivant, D.P., Sagar, M., Charette, P., LaFontaine, S. Non-linear morphing of faces

and their dynamics. US 20020041285 Patent pending. 2002.

3. Hunter, P.J., Budgett, D., Smith, N. Methods of generating, customising and using a biophysical virtual model of a

body and software, apparatus and systems therefore. NZ Pat Appl No 548972 (filed on 4 August 2006). 4. Smith N.P., Budgett D.M., Hunter, P.J., Malcolm D.T.K., Cheng L.K.W., Nielsen P.M.F., Pullan A.J., Young A.A.

Virtual model database and applications, jointly filed with both U.S. and European patient offices in 2007.

Invited talks over last 10 years:

2002

Mar 6 Colorado, US Invited talk at Univ Utah in Boulder

Mar 29 Hiroshima, Japan Keynote lecture, ‘In Silico Physiology’ Symposiumn

May 10 San Diego, US Invited talk, NASPE Conference

May 22 Taipei, Taiwan Keynote lecture, Asia Biosciences

Jun 17-21 Portugal Biomechanics Workshop organized by CIM (Centre for Industrial Maths, Portugal)

32

Jul 9 Vienna, Austria Invited talk, World Congress of Computational Mechanics

Jul 15 Karlsruhr, Germany One-day workshop, organized for my visit to Herbert Oertel and Olaf Doessel

Jul 24 Montreal, Canada Keynote lecture, Int.al Soc. Electrocardiology

Jul 26 Plymouth, UK Invited talk, Plymouth Marine Lab

Aug 8 Calgary, Canada Keynote lecture, 4th World Congress of Biomechanics

Aug 19 Melbourne, Australia Invite talk, AusBiotech IBM Life Sciences

Sep 2 Oxford, UK Keynote lecture, Stretch Activated Channel Conference

Oct 31 Seoul, Korea Keynote lecture, Symposium on Physiome Project, Seoul, Korea

Nov 11 Rotorua, NZ Plenary address, Engineering and Physical Sciences in Medicine

Nov 14-20 Hinxton, UK Invited talk, First Standards & Ontologies for Functional Genomics Conf.

2003

Feb 23-26 San Diego, US AccelrysWorld

Mar 22-26 Lenox, US Invited talk at the 2nd Intl Symposium on Computational Cell Biology in IUPS

Apr 9-15 San Diego, US Experimental Biology meeting

May 1-3 Vancouver, Canada EMBS Advisory Committee Meeting

May 14-17 Washington, US NASPE 2003 Scientific Sessions

Jun 26-Jul 4 Brisbane, Australia ISMB (Intelligent Systems for Molecular Biology) 2003 Conference

Jul 14-18 Auckland, NZ Invited talk at Modeling Cellular Function on Waiheke Island

Aug 24-30 Sydney, Australia Keynote speaker: World Congress on Medical Physics and Biomedical Engineering

Oct 17-20 Dalian, China Invited talk at WHTS 1st Annual Congress of International Drug Discovery

Oct 23-27 Stanford, US Keynote speaker at Biomedical Computation (BCATS) Conference

Nov 2-4 Leesburg, US ISPC (IUPS Scientific Programming Committee) Meeting

Nov 6-7 Bethesda, US Invited talk at BISTIC Digital Biology Symposium

Nov 30–Dec3 Sydney, Australia Invited talk at ASCEPT Meeting

2004

Feb 27-28 Kyoto, Kobe, Japan Invited talk at International Symposium on Cell/Biodynamics Simulation

Mar 16-20 Basel, Switzerland Invited talk at BC2 Basel Computational Biology Conference

Mar 24-29 San Diego, US Invited talk at Multiscale Computational Models Workshop UCSD

Apr 1-3 Phoenix, Arizona, US EMBS Advisory Committee Meeting

Apr 16-21 Washington, US Experimental Biology 2004

Apr 28-May 1 Crete, Greece Invited talk at 2nd International Conference on Functional Genomics of Ageing

May 6-7 Washington, US Invited talk at the Third Scientific Meeting of the TMJ Association Advancing

Diagnostic Approaches for TMJ Diseases/Disorders

May 8-11 Milwaukee, US Invited talk at Medical College of Wisconsin Seminar

Jun 10-11 Oslo, Norway Invited talk at National Seminar for Mathematical Methods in Cardiology

Jun 14-15 Cap-d’Ail, France Invited talk at Workshop on Computer Modeling

Jun 16-19 Nice, France Invited talk at Cardiostim 2004 – 14th World Congress in Cardiac Electrophysiology

Jun 24-26 Lausanne, Geneva, Invited talk at Heart Tissue Meeting

Jun 27-Jul 2 Graz, Austria Invited talk at IUTAM Symposium on Mechanics of Biological Tissue

Aug 6-10 Brisbane, Australia Invited talk at XVIII World Congress of the Intl Society for Heart Research

Aug 27-29 Pittsburgh, US Invited talk at Computational Methods for Spatially Realistic Cellular Simulations

Sep 3-5 Montpellier, France Plenary lecture speaker at Cardiac Cellular Electrophysiology Meeting,

Sep 18 New York, US Invited talk at the Biomedical Eng. Symp., 250th Anniversary, ColumbiaUniversity

2005

Mar 29-30 San Diego, US Physiome Project satellite meeting (to IUPS World Congress)

Apr 1-2 San Diego, US Meeting of IUPS Physiome Committee

Apr 10-11 Nottingham, UK Physiological Flows meeting.

May 4-6 Melbourne, Australia Discovery Science & Biotech meeting

Jun 2-4 Barcelona, Spain FIMH meeting & meeting in European physiome project

Jun 25-29 Detroit, US ISMB (Int.al Soc for Molec Biol) annual meeting.

Jul 14-15 Nottingham, UK U21 Systems biology meeting.

Sep 1-4 Shanghai, China EMBS World Congress

Sep 6-10 Oslo, Norway 2nd European Science Foundation Functional Genomics meeting.

Sep 26-30 Brisbane, Australia APAC’05 Australian Partnership for Advanced Computing

33

Sep 28-30 Baltimore, US Physiome session at BMES (Biomed Eng Society) annual meeting

Dec 7-10 Singapore 12th International Conference on Biomedical Engineering

2006

Jan 18-22 Osaka, Japan Invited talk at Osaka University and ISPC Meeting

Apr 1-5 San Francisco, US Experimental Biology 2006, EP Editorial Meeting & APS Seminar

Apr 6-9 Washington, US ISBI 2006 (IEEE Int’l Symposium on Biomedical Imaging)

Apr 19-20 Singapore Symposium on Engineering Science at NUS

Apr 23-27 Charleston, US 4th Larry & Horti Fairberg Workshop

Jun 1-2 Graz, Austria Integrative Physiology & Interdisciplinary Conference

Jun 3-9 Lisbon, Portugal ECCM 2006 (III European Conf on Computational Mechanics)

Jun 6-8 Oslo, Norway 1st Glial Endfoot Meeting

Jun 29-30 Brussels, Belgium ICT for Medical Sciences, 2006

Aug 1-04 Munich, Germany 5th World Congress in Biomechanics

Aug 6-7 Canberra, Australia CSANZ Annual Scientific Meeting

Sep 1-4 Queenstown, NZ QueST 2006 (Queenstown Signal Transduction Meeting)

Sep 6-8 San Francisco, US Invited talk at University of California, Berkeley

Sep 10-16 Udine, Italy IUTAM – CISM Summer School

Sep 25-28 Ohio, US Workshop #1 on Cardiac Electrophysiology and Arrhythmia

Oct 8-13 Mykonos, Greece 4th International Conference on Pathways, Networks, and Systems

Nov 6-7 Brussels, Belgium Final meeting to discuss STEP (Strategy for European Physiome)

Dec 4-6 Amsterdam, Netherlands 2nd IEEE International conference on eScience & Grid Computing

2007

Feb 5-6 San Diego, US NBCR advisory mtg at UCSD

Feb 6-7 Washington, US MIT-NSA instrumentation mtg

Feb 27-28 London, UK Hounsfield lecture, Imperial College

Mar 21-23 Hong Kong & China Plenary lecture IEEE ICIT 2007, Shenzhen. Lecture at CUHK

Apr 4-5 Auckland, NZ 1st International CellML workshop

Apr 10-11 Washington, US NIH Workshop on strategies for model sharing

May 20-24 NY & London UoA alumni talks

Jun 24-28 Ascona, Switzerland Invited talk at Omics physiome meeting

Jul 1-2 Nottingham, UK International Advisory Board mtg, Centre for Plant Integrative Biology

Jul 10-17 Sienna, Italy Lectures to summer school

Aug 8-9 Melbourne, Australia Seminar at Monash

Aug 10-11 Oslo, Norway Seminar to eVita group

Sep 26-29 Los Angeles, US BMES meeting

Oct 16-19 Fukushima, Japan Plenary lecture to ICBEM2008 conference

Oct 24-25 Washington, US NSF meeting on international collaborative science

Oct 25-27 San Francisco, US Scientific Advisory board mtg for SIMBIOS

Oct 29-30 Brisbane, Australia Plenary lecture to MICCAI conference

Nov 5-9 Auckland, NZ Plenary lecture to ER conference

Nov 27-30 Queenstown, NZ Medsci Conference

Dec 5-7 Tokyo, Japan International scientific programme cttee for IUPS 2009 World Congress

Dec 8-10 Kyoto, Japan Invited lecture at Kyoto Physiome Project symposium

2008

Jan 23 Sydney, Australia Cardiac electrophysiology workshop with Jamie Vandenburg

Feb 10-15 Perth, Australia Invited talk on Physiome Project at Microscopy conference

Feb 19 Auckland, NZ Opened Respiratory Physiome conf in Auckland (organized by Merryn Tawhai)

Mar 6-7 San Francisco, US American Association of Orthopaedic Surgeons (AAOS) – mtgs with Zimmer

Mar 26 Auckland, NZ 2nd International CellML workshop

Mar 27-29 Waiheke, NZ Organized International Heart Physiome mtg

Apr 5-9 San Diego, US Organised Physiome session at Experimental Biology

Apr 10-12 Seoul, Korea Plenary lecture at Korean Physiological Society Physiome mtg

Apr 14 Wisconsin, US Invited talk on Physiome Project at Medical College Wisconsin (MCW)

34

Apr 15 Madison, US Invited talk on Physiome Project at Univ. Wisconsin, Madison

May 7-8 Osaka, Japan Plenary lecture at Japanese Society for Medical and Biological Engineering

May 7-10 Kobe, Japan Plenary lecture at 2nd MEI Int.l Symposium on Physiome and Systems Biology

Jun 2-4 Chicago, US Keynote at HealthGrid 08 conference

Jun 5-9 Oxford, UK Meetings in Oxford

Jun 10-11 Aachen, Germany Kickoff meeting for euHeart EU FP7 project

Jun 13-14 Oslo, Norway Invited lectures at Norwegian Life Sciences University

Jun 15-19 Crete, Greece Invited lecture at Int.l Conf. on Pathways, Networks, and Systems Medicine

Jun 21-25 Brittany, France Invited lectures at 8th IEEE EMBS Int.l Summer School on Biomedical Imaging

Jun 26-27 Brussels, Belgium Kickoff meeting of EU VPH Network of Excellence

Jul 3 London, UK Smith & Nephew lecture, Institute Mechanical Engineers (IMechE)

Jul 8 London, UK openCMISS workshop with Barcelona group

Aug 4-7 Montreal, Canada Invited lecture at SIAM Conference on Life Sciences

Aug 12 Auckland, NZ Winter lecture on international research collaborations

Aug 17-19 Maynooth, Ireland Plenary lecture at Systems Biology Conf at Hamilton Institute

Aug 23-27 Gotenburg, Sweden Keynote at Int.l Conf. on Systems Biology (ICSB)

Oct 2 Melbourne, Australia Plenary lecture on Physiome Project at MERIT symposium

Oct 22-24 Brussels, Belgium Invited talk at ICT-Bio Meeting

Nov 16-17 Christchurch, NZ Plenary lecture on Physiome Project at EPSM-ABEC Conf

Dec 1-6 Hawaii, US Keynote at HealthGrid Workshop at RCMI symposium

Dec 7-10 San Diego, US Workshop on graduate curricula for BME programmes, UCSD

2009

Feb 2-3 Cambridge, UK VPH Industry meeting.

Mar 2-4 Atami, Japan 11th Tamagawa Dynamic Brain Forum

Apr 18-22 New Orleans, US Experimental Biology VPH/Physiome session

Apr 21-23 North Carolina, US Virtual Tissue workshop at Environmental Protection Agency (EPA)

May 25-30 Oslo, Norway Seminars and workshops at Norwegian University of Life Sciences

Jun 29-30 Oxford, UK Plenary lecture for opening of OCCAM Institute

Jul 1-19 Cambridge, UK Workshop on computational physiological modeling

Jul 20-24 Cambridge, UK Heart Physiome Conference

Jul 27-31 Kyoto, Japan Lectures and workshops at 36th IUPS World Congress

Aug 27-28 Alpbach, Austria Alpbach Technology Forum

Sep 2-6 Minneapolis, US EMBC09

Sep 6-8 Pilsen, Czech Republic INCF 2nd World Congress of Neuro-informatics

Sep 16-18 Bologna, Italy ICCB2009

Sep 21-24 London, UK MICCAI conference

Oct 2-3 Melbourne, Australia Monash University

Nov 21 Wellington, NZ NZ Postgrad conference

Dec 15-16 Washington DC, US NIH IMAG Futures meeting

2010

Feb 8 San Diego, US NBCR-RAC Meeting

Feb 9-10 Utah, US NCRR EAB Meeting

Feb 13-18 San Diego, US SPIE Medical Imaging

Feb 25-26 Auckland, NZ 3rd International CellML Workshop

Mar 29–Apr1 Perth, Australia Margaret River Forum

Jun 31-Jul 2 Amsterdam, Netherlands 10th International Conference on Computer Science (ICCS)

Jun 2-5 Sardinia, Italy 4th Intl. symp on Math & Numerical Modeling of Physiological Flows (MPF)

Jun 10 Oxford, UK British Heart Foundation (BHF) talk

Jun 24 Oxford, UK OCCAM Advisory Board Meeting

Jul 5-8 Edinburgh, UK 17th Congress of the European Society of Biomechanics

Jul 9-14 Rhodes, Greece 8th International Conference on Pathways, Networks and Systems Medicine

Aug 1-4 Singapore World Congress on Biomechanics WCB 2010

Aug 28-31 Argentina EMBS Advisory Board Meeting

Sep 27-29 Brussels, Belgium ICT2010 Conference

Oct 30-2 Brussels, Belgium VPH2010 Conference

35

Oct 6-9 Edinburgh, UK COMBINE Workshop

Oct 10-15 Edinburgh, UK 11th International Society for Systems Biology (ICSB) Conference

Oct 18 Hinxton, UK VPH – Systems Biology Meeting

Oct 19-20 Barcelona, Spain euHeart General Assembly Meeting

Oct 27-28 Washington DC, US NIH Interagency Modeling Analysis Group (IMAG) annual mtg

Oct 29 Los Angeles, US VW Orthocare Meeting

Nov 4 Melbourne, Australia Invited talk at Bio21 Cluster: Systems Biology Symposium

Nov 19 Sydney, Australia Invited talk at Biological Systems Engineering Workshop, UNSW

Nov 30-Dec 3Queenstown, NZ MedSci 2010 Conference

Dec 5-8 Dresden, Germany Virtual Liver Project / Scientific Advisory Board Meetings

Dec 9 Berlin, Germany Invited talk at Max Planck Institute

Dec 10 London, UK VPH FET Meeting

2011

Feb 14 Tehran, Iran Sharif University

Mar 28-29 Cambridge, UK EBI Industry workshop

Mar 30 Washington DC, US 2nd Int.al Conf on Computational & Mathematical Biomedical Eng. (CMBM)

Apr 1 San Diego, US UCSD 50th Anniversary Skalak Memorial Lecture

Apr 11 Auckland, NZ 4th International CellML Workshop

Apr 13 Auckland, NZ Les Woods Memorial Lecture

May 4 San Francisco, US Heart Rhythm Society

Jun 10-15 Crete, Greece 9th International Conference on Pathways, Networks and Systems Medicine

Jun 27 London, UK VPH Future Emerging Technologies mtg

Jun 28-Jul 2 Krakow, Poland 8th European Conference on Mathematical & Theoretical Biology (ECMTB)

Aug 8-9 Perth, Australia Cartilage and Bone Symposium

Aug 26-27 Seattle, US Global Alliance to Prevent Prematurity & Stillbirth (GAPPS)

Aug 29-Sep 1 Stanford, US Int.al Union of Theoretical & Applied Mechanics (IUTAM) Symposium

Sep 1-4 Boston, US Engineering in Medicine and Biology annual Conference (EMBC)

Sep 7-9 Washington DC, US FDA 4th annual workshop on Computer Methods for Medical Devices

Oct 6 Washington DC, US NIH Interagency Modeling Analysis Group (IMAG) annual mtg

Nov 21-23 Osaka, Japan 4th Int. Symposium on Physiome & Systems Biology

Dec 5 Sydney, Australia 10th Engineering Mathematics and Applications Conference (EMAC)

2012

Mar 20 Auckland, NZ 5th International CellML workshop,

Mar 26-27 Melbourne, Australia Systems Biology of Colonic Crypts Symposium

Apr 26-27 Atlanta, US 7th Int.al Symposium on Biomechanics in Vascular Biology & CV Disease

May 2-5 Barcelona, Spain International Symposium on Biomedical Imaging (ISBI)

May 26-31 Beijing, China 12th World Congress on Medical Physics and Biomedical Engineering

Jun 10-15 Rhodos, Greece 9th International Conference on Pathways, Networks and Systems Medicine

Jul 9 Leipszig, Germany Plenary lecture on at Conference on Systems Biology of Mammalian Cells

Jul 10 Leipszig, Germany Chaired debate between Denis Noble & Sydney Brenner on systems biology

Jul 9-13 Graz, Austria Plenary lecture at Euromech conference

Aug 7-10 San Diego, US Plenary lecture at SIAM Life Sciences Conference

Sep 4 Oxford, UK Plenary lecture at Wellcome Trust workshop

Sep 6-7 Oxford, UK Plenary lecture at Bioengineering 2012 conference

Sep 12 Trondheim, Norway Opening lecture at Systems Medicine Workshop

Sep 18-20 London, UK Invited talk at VPH2012 conference

Oct 28-31 San Diego, US Keynote at Cardiac Physiome mtg

Dec 13-14 San Diego, US Keynote at Towards the 3D Virtual Cell. Workshop

2013

Feb 7-8 Trondheim, Norway Workshop on VPH/Physiome tools

Mar 25-26 Auckland, NZ CellML workshop

Apr 17 Cleveland, Ohio, US Invited talk on VPH/Physiome project at Cleveland Clinic

Apr 20-22 Boston, MA, USA Invited talk on VPH/Physiome project at Experimental Biology

Jun 11-14 Cagliari, Sardinia Invited talk on VPH/Physiome project at Physiological Flows Conference

36

Jun 25-26th Auckland, NZ Invited talk and Workshop at MTANZ

Jul 3-7 Osaka, Japan Keynote on VPH/Physiome project at EMBC

Jul 8-9 Singapore Keynote at NITHM: Health Systems Complexity Symposium

Jul 17-19 Stuttgart, Germany Talks at Fraunhofer Institute

July 21-26 Birmingham, UK Keynote on Physiome project at IUPS Congress

July 28-29 Chicheley, UK Talk on VPH/Physiome project at ICSU Bio-Unions Satellite Symposium

Sep 3-5 Napa Valley, US Keynote on VPH/Physiome project IBM Current Challenges in Computing Conf

Oct 2 Oxford, UK Cardiac Lecture at Burdon Sanderson Centre

Oct 14 Oslo, Norway Lecture on VPH at Oslo University

Oct 16 Bar Harbor, US Invited talk at VPR EAB

Oct 17-19 Bar Harbor, US Plenary lecture on VPH/Physiome project at Cardiac Physiome 2013

Dec 2-3 Singapore Invited talk on VPH/Physiome project at IEEE Life Sciences Meeting

Dec 4-7 Singapore Keynote on the VPR project at ICBME Conference

2014

Apr 14-15 Auckland, NZ CellMLWorkshop

Jun 10-11 Auckland, NZ Workshop at MTANZ

Jun 17 Wellington, NZ Workshop at eResearch 2020

Jun 24 Paris, France Keynote at Nicolas Ayache Symposium

Aug 25 Queenstown, NZ Invited talk at MedSci Congress 2014

Sep 9-11 Trondheim, Norway Keynote at VPH 2014

Sep 15 Melbourne, Australia Keynote at ICSB 2014

Sep 30 Dunedin, NZ Seminar at University of Otago for Olaf Bork

Oct 23-24 Sydney, NZ Keynote at Victor Chang Symposium

Oct 29 Wellington, NZ Invited talk on NZ Research System at Royal Society Fellows Forum

Dec 3-5 Gold Coast, Australia Keynote at Gold Coast Health and Medical Research Congress

2015

6-Mar Keynote, HD Physiology Symposium Osaka, Japan Mar 6 Osaka, Japan Keynote at HD Physiology Symposium

Mar 24 Queenstown, NZ Keynote at eResearch 2015 Meeting

Mar 27 Salt Lake City, USA Seminar at University of Utah

Jun 16 Auckland NZ CMDT Session, MTANZ

Jun 26 Crete, Greece Keynote at 11th International Pathways, Networks and Systems Medicine

Jul 1 Leeds, UK Seminar at University of Leeds

Sep 2 Monte Carlo, Monaco Keynote at OESO

Sep 9 London, UK Webinar for VPH Institute

Oct 21 Brisbane, Australia Keynote at Australasian eResearch 2015

Nov 12 Wellington, NZ Rutherford Fellowship Workshop

Dec 3 Christchurch, NZ Keynote at BIC Symposium

Dec 8 Auckland, NZ Keynote at ICST

2016

Jun 21 Auckland Talk at MTANZ Healthcare Congress 2016

Jun 27 Zurich, Switzerland Keynote at ETHZ LATSIS Symposium

Jul 4 Graz, Vienna Invited Lecturer at TUGRAZ Biomechanics Summer SchoolKey

Jul 17 Hong Kong Keynote at Advanced Health Informatics (GRC)

Aug 10 Melbourne, Australia Keynote at ACMD Global Vision Series, St Vincent Hospital

Aug 18 Florida, USA Mini Symposium presenter at EMBC 2016

Aug 21 Montreal, Canada Keynote at ICTAM 2016

Sep 7 Exeter, UK Keynote at Biodynamics Conference

Nov 1 Auckland, NZ Plenary lecture at HINZ conference

Dec 5 Thuwal, Saudi Arabia Keynote at Computational Systems Biology in Biomedicine symposium at KAUST

37

2017

Mar 20 Oslo Invited talk at Digital Life Conference

Apr 10 Auckland Talk at CellML workshop

Jun 30 Crete Invited talk at Pathways Conference

Jul 4 Gothenburg Invited keynote at SEB Conference

Jul 17 Sheffield Invited talk to Insigneo Institute at the University of Sheffield

Aug 1 Rio Presentation on Physiome journal at the IUPS World Congress

Aug 28 Dunedin Invited talk at the Otago Dental School

Oct 23 Oslo Invited talk at Simula Workshop

Nov 27 Auckland Invited talk at Mechanobiology Conference

Dec 12 Hangzhou Invited talk at Ideas to Life workshop for opening of UniServices Institute in China

Dec 14 Jinan Invited talk at Jinan National Supercomputer Centre

Reviewer for: American Journal of Physiology

Annals of Biomedical Engineering

Progress in Biophysics and Molecular Biology

IEEE Transactions on Biomedical Engineering

Circulation Research

ASME Journal of Biomechanical Engineering

Australian Health Research Council

British Heart Journal

Cardiovascular Research

Circulation Research

Interface (Royal Society)

Journal of Biomechanics

Mathematical Biosciences

PLoS Computational Biology Journal

NZ Health Research Council

NZ Heart Foundation

NZ Medical Research Society

NZ Foundation for Research, Science and Technology

NZ Lottery Grants Board

US National Science Foundation

US National Institute of Health

Wellcome Trust

Swiss Federal Institute of Technology, Zurich

Dutch Research Council NWO

Appointed to editorial board of Biomechanics and Modelling in Mechanobiology in 2002.

Membership of Societies International Union of Physiological Sciences (Elected to International Program Committee for 2004 World Congress)

American Society of Mechanical Engineers (US)

Biomedical Engineering Society (US)

Biophysical Society (US)

Society for Industrial and Applied Mathematics (US)

International Society for Heart Research.

Physiological Society of New Zealand.

Royal Society of New Zealand (appointed Fellow in 1994)

American Institute for Medical and Biological Engineering (AIMBE). (Elected AIMBE Fellow in 2001)

International Society of Electrocardiology

IEEE Engineering in Medicine and Biology (EMBS). (Elected to EMBS AdCom for 3 year term 2003-2005)

Australia and New Zealand Society of Biomechanics

Elected to World Council of Biomechanics at World Congress in Calgary in 2002

Elected Secretary-General of World Council of Biomechanics at World Congress in Munich in 2006

Research grants

38

1. 1979 MRC Project Grant. $12,000 over two years.

Cardiac muscle and ventricular mechanics.

2. 1980 Golden Kiwi Medical Research Fund. $6,300.

Experimental cardiac muscle mechanics.

3. 1981 Life Insurance Medical Research Fund of Australia and NZ. $31,000 over two years.

Cardiac mechanics and thermodynamics.

4. 1983 National Heart Foundation Project Grant. $43,000 over two years.

Cardiac mechanics.1

5. 1984 National Heart Foundation Project Grant. $33,200.

Cardiac mechanics.1

6. 1984 Auckland Medical Research Foundation. $3,300.

Cardiac architecture.1

7. 1986 Wallath Trust. $8,400.

Imaging equipment.1

8. 1986 Natural Sciences and Eng. Research Council of Canada Scientific Exchange Award. $10,000.

Finite element modelling of single muscle fibre mechanics.

9. 1988 UGC Research Grant. $25,000 (to purchase an array processor for Engineering Science).

Establishment of parallel computing facilities within the School of Engineering.

10. 1990. National Heart Foundation Project Grant. $50,000 over two years.

Cardiac microstructure in relation to electrical and mechanical function.

11. 1991. AU Research Fund. $46,000.

Graphics workstation for geothermal and biomechanics modelling.3

12. 1991. Lottery Grants Board. $20,000.

Graphics workstation for geothermal and cardiac modelling.3

13. 1991. AU Research Fund. $4,064.

Bone density scanning.

14. 1991. AU Research Fund. $4,921.

Confocal laser scanning imaging of cardiac structure.6

15. 1992. Lotteries Health. $23,980.

Myocardial activation and cardiac mechanics.

16. 1992. Lotteries Health . $12,441.

Mathematical modelling of human torso.4

17. 1992. Lotteries Science. $30,000.

Computer generated video animation.5

18. 1993. Health Research Council. $360,469 (3 years)

Electrical activation of the heart in relation to cardiac tissue architecture.1

19. 1993. Heart Foundation of New Zealand. $126,009 (2 years).

Three-dimensional heart wall motion in relation to cardiac tissue architecture and material properties.1

20. 1993. Affiliated with FRST Grant to Dr P.M.F. Nielsen. $120,000 (1 year, renewed for further year)

Fibre optic confocal microscope

21. 1994. AU Research Fund. $45,000.

Body surface mapping.

22. 1994. Lotteries Science. $100,000.

High performance computer.7

39

23. 1995. AU Research Fund. $10,000.

Biaxial testing rig for soft biological tissue.

24. 1995. AU Research Fund. $8,000.

Video capture and compression board.5

25. 1995. AU Research Fund. $100,000.

High performance computer.7

26. 1995. AU Research Fund. $8,000.

Video capture and compression board.5

27. 1996. Netherlands Organisation for Scientific Research. $10,000.

Research grant on tissue remodelling.8

28. 1997. AU Research Fund. $40,000.

Faro Arm for 3D geometric measurements.

29. 2000. NZ Health Research Council. $517,000 for 3 years (PI: Dr A.A. Young)

Biomedical analyses of cardiac magnetic resonance images.3

30. 2000. The Welcome Trust. $540,000 for 3 years. (PI: Dr I.J. LeGrice)

High Throughput Extended Morphometry Resource.10

31. 2000. NZ Foundation for Research, Science and Technology, New Economy Research Fund. $500,000/yr for 2 ½ years

New orthopaedic applications of bioengineering research.

32. 2001. Marsden Fund. $120,000 per year for 3 years.

Integrating tissue and airway mechanics and the pulmonary circulation into a mathematical model of the human

lungs. 9

33. 2001. Marsden Fund. $195,000 per year for 3 years. (PIs A/Profs B.H. Smaill and A.J. Pullan)

Three dimensional visualization and analysis of cardiac electrical events. 10

34. 2002. NZ Foundation for Research, Science and Technology, New Economy Research Fund. $500,000/yr for 3 years

New orthopaedic applications of bioengineering research. (Renewal)

35. 2002. NZ Foundation for Research, Science and Technology. $2,271,786 over 4 years.

CMISS: Physiome Project Software

35. 2002. NZ Foundation for Research, Science and Technology. Postdoc support for Alona Ben-Tal. $188,148 over 3 years

Mathematical Models for the Cardiorespiratory System.

36. CoRE. (PI Prof Ted Baker)

Centre for Molecular Biodiscovery

37. CoRE (PI Prof Marston Conder)

NZ Institute for Mathematics and its Applications

38. 2004. NZ Foundation for Research, Science and Technology, New Economy Research Fund. $1,157,674/yr for 6 years

Bioengineering applications of musculo-skeletal modelling.

39. 2004. Wellcome Trust. ₤1,112,804 for 5 years

Heart Physiome Project (co-PI with Prof David Paterson at Oxford)

41. 2004. Marsden Fund. $200,000 per year for 3 years. (PI Prof James Sneyd)

Modeling the calcium cardiac transient on multiple spatial scales.

42. 2005. EU Framework 6 (PI through Oxford) €180k over 3 years

@neurIST project on cerebral aneurysms

43. 2005. Marsden Fund (AI; PI is Prof James Sneyd) $200k over 3 years.

Modeling the calcium cardiac transient on multiple spatial scales.

44. 2005. NIH grant. (co-PI; lead PI is Prof Dan Beard at MCW)

Multiscale modeling of metabolic syndrome.

40

45. 2006. HRC Programme Grant (PI). $3,639,611 over 3 years.

Cardiac structure and function: a bioengineering analysis.

46. 2006. Breast Cancer Research Trust, New Zealand

Molecular Pathways that Regulate the Growth of Breast Cancer

Co-Principal Investigator (with C. Print and E.J.Crampin)

1 August 2006 – 31 December 2008 NZ$ 276,861

47. 2006. Health Research Council NZ, International Investment Opportunities Fund, HRC IIOF 06-581

Inferring Genetic Pathways in Melanoma Cells

Co-Principal Investigator (with C. Print and E.J Crampin)

July 2006 – 31 December 2008 NZ$ 583,478

48. 2007. GIPI grant from TEC. $1,281,333. Jan 2007 to Dec 2008

Developing an innovation pathway for Bioengineering.

49. 2007. NZ Foundation for Research, Science and Technology (RFI) (Co-PI with Dr P Mithraratne)

Biomechanics for Animation (with Weta Digital)

2007 - 2010

50. 2008. NZ Foundation for Research, Science and Technology, New Economy Research Fund (Subcontract through IRL)

Advanced Skin Imaging

September 2008 – August 2012

51. 2008. EU Framework 7 Approx €1m over 4 years

Network of Excellence for EuroPhysiome (VPH) project.

52. 2008. EU Framework 7 Approx €1m over 4 years (administered via Oxford)

euHeart project

53. 2010. Cleveland Clinic Foundation, US.

Impact of long duration space flight on cardiac structure and function October 2010 – September 2013

54. 2010. EU Framework 7.

RICORDO-Researching Interoperability using Core Reference Datasets and Ontologies for the Virtual

Physiological Human.

February 2010 – September 2012

55. 2010. EU Framework 7.

MSV-Multiscale Spatiotemporal Visualisation: development of an open-source software library for the interactive

visualization of multiscale biomedical data

1 January 2010 – 31 December 2012

56. 2010. MBIE & TechNZ (PI Dr Premakumar Mithraratne)

Expressive Heads and Hands

2010 - 2014

57. 2010. MBIE NZ. $3,555,555 (PI Prof Martyn Nash)

Bioengineering technologies for breast and lung

October 2010 – September 2014

58. 2011. Medical College of Wisconsin, US.

The Virtual Physiological Rat Project 4

August 2011 – July 2016

59. 2011. European Commission.

Virtual physiological human sharing for healthcare – A research environment (VPH-Share)

March 2011 – February 2015

60. 2012. MBIE HVMS, NZ. $812,744

Virtual Clinical Trials (CMDT)

October 2012 – September 2014

41

61. 2013. Marsden Fund, NZ. $791,304

How Does the Heart Grow?

March 2013 – February 2016

62. 2013. Health Research Council Programme Grant, NZ. $4,993,668

Mapping Determinants of Arrhythmia in Structural Heart Disease October 2013 – September 2018

63. 2014. Centre of Research Excellence (CoRE), NZ. $24m over 6 years

Medical Techologies CoRE

January 2015 – December 2020

64. Various travel grants from the HRC, the Auckland Medical Research Foundation, etc.

1 Jointly with A/Prof B.H. Smaill, Dept. of Physiology.

3 Jointly with A/Prof. M.J. O’Sullivan, Dept. of Engineering Science.

4 Jointly with Dr A.J. Pullan, Dept. of Engineering Science. 5 Jointly with A/Prof. G.D. Mallinson, Dept. of Mechanical Engineering.

6 Jointly with Dr. P.M.F. Nielsen, Dept. of Engineering Science.

7 On behalf of Committee for establishing a High Performance Computing Facility at the University. 8 Jointly with Prof. T. Arts, University of Maastricht.

9 Jointly with Dr. M.H. Tawhai, Dept. of Engineering Science.

10 Jointly with A/Prof B.H. Smaill, Dr I. LeGrice, Dr. A.A. Young, Dept. of Physiology, and A/Prof. A.J. Pullan, Dept. of Engineering Science.

Contract research

1. Biaxial testing of synthetic biomaterials.1 $5,600.

Hancock Laboratories Inc., 1988.

2. Biaxial testing of synthetic biomaterials.1 $7,360.

Hancock Laboratories Inc., 1986.

3. Biaxial testing of bioprosthetic heart valves.1 $21,160.

Medtronics Blood Systems, 1987.

4. Stress analysis of yacht sails. $5000.

Yacht Research Unit, School of Engineering, 1987.

5. Biaxial testing of bioprosthetic heart valves.1 $18,360.

St. Jude Biomedical, 1988.

6. Stress analysis of mainsail for America's Cup Challenge. $25,000.

North Sails Ltd, 1988.

7. Biaxial testing of bioprosthetic heart valve leaflets.1 $6000.

Medtronic Blood Systems, 1989

8. Biaxial testing of bioprosthetic heart valves.1 $6,400.

St. Jude Biomedical, 1989.

9. Software development for cardiac research. $12,500.

Greenlane Hospital, 1989.

10. Electrocardiographic mapping system. US$75,000.

Cedars-Sinai Medical Centre, Los Angeles 1993

11. Virtual studio project. $10,000.

Television New Zealand, 1993

12. Bone shape fitting. $10,000.

Meat Industry Research Institute of New Zealand (MIRINZ), 1995

13. Stress analysis in pressure transducer. $7,000.

Industrial Research Ltd (IRL), 1995

14. Graphical display and user interface for Oilfield simulation.2 US$100,000

SimSci Ltd, USA. 1997

15. Heart modelling. US$20,000 per month for 4 years

Physiome Sciences Ltd. 1998

16. Animation modelling for the entertainment industry. US$150,000 per year for 3 years

Pacific-Title Mirage Ltd. 1998

42

1 Jointly with Dr. B.H. Smaill, Dept. of Physiology.

2 Jointly with A/Prof. M.J. O’Sullivan, Dept. of Eng. Science.

3 Jointly with Dr. A.A. Young, Dept. of Physiology.

4 Jointly with Dr. I. LeGrice, Dept. of Physiology.

Supervision of PhD students Chee Hong Loh (UGC Post Graduate Scholar).

"Numerical analysis of cochlear mechanics". Completed 1982.

Andrew D. McCulloch1 (MRC Post Graduate Fellow).

"Deformation and stress in the passive heart". Completed 1986.

Poul M.F. Nielsen1 (Supported by Life Insurance Medical Research Fund.)

"The anatomy of the heart: A finite element model". Completed 1987.

Alistair A. Young1 (National Heart Foundation Post Graduate Fellow).

"Epicardial deformation from cineangiograms". Completed 1990.

Kai S. Lay7 "Finite element and boundary element methods in liquid storage tanks". Completed 1990.

Ian J. Le Grice1 (Isaacs Fellow, Auckland Medical Research Foundation).

"An analysis of cardiac electrical activation". Completed 1992.

Iain A. Anderson4 "The effects of prosthetic implants on the biomechanics of the hip joint". Completed 1996.

Gregory B. Sands1 (AU Postgraduate scholar)

"Mathematical model of ventricular activation in an anatomically accurate deforming heart". Completed 1997.

Martyn P. Nash1 (UGC Postgraduate scholar, BNZ scholar.)

"Mathematical modelling of stress distribution in the actively contracting heart". Completed 1997.

Chris P. Bradley5 (UGC Postgraduate scholar)

"Body surface mapping". Completed 1998.

Mark A. Sagar6 (UGC Postgraduate scholar)

"Creating anatomic models for bioengineering virtual environments". Completed 1996.

Karl A. Tomlinson5 (UGC Postgraduate scholar)

“Use of eikonal equations in modelling cardiac activation”. Completed 1998.

Nicolas Smith5 (University of Auckland postgraduate scholarship)

“Coronary flow modelling”. Completed 1999.

Merryn Tawhai5 (GRIF scholarship)

“Mathematical modelling of the lung”. Completed 2001.

Martin Buist5 (UniServices Scholarship)

“Mathematical modelling of myocardial activation”. Competed 2002.

Carey Stevens5 (UniServices Scholarship)

“Mathematical modelling of myocardial infarcts”. Completed 2003.

Justin Fernandez11 (FRST Enterprise scholarship)

“Knee joint mechanics”. Commenced 2000. Completed 2004. “Best Doctoral Thesis” prize for 2004.

Darren Hooks1 (Health Research Council scholarship)

“Activation of myocardial sheets”. Completed 2002.

Jonathan Pearce6 (FRST Bright Futures “Top Achiever” scholarship)

“Left ventricular fluid mechanics”. Commenced 2001.

Phil Blyth12 (UniServices Scholarship)

“Virtual surgery of the knee joint”. Commenced 2001.

Kelly Burrows (UniServices Scholarship, FRST Bright Futures scholarship)

“Modeling the pulmonary circulation”. Commenced 2001.

Duane Malcolm13,14 (UniServices Scholarship, FRST Bright Futures scholarship)

“Modeling the lens”. Commenced 2001.

Holger Schmid15 (University of Auckland International Postdoctoral scholarship)

“Ventricular mechanics”. Commenced 2003.

Glenn Ramsey15

Modeling horse hoof mechanics. Commenced 2003

Alice Boit

43

Modeling signal transduction pathways in a 3D cell model. Commenced 2004. Suspended for family reasons 2004.

Mike Cooling (FRST Top-achiever scholarship)

A quantitative dynamic model of the IP3 signal transduction network in the heart. Commenced 2004

David Nickerson Cardiac electro-mechanics: From CellML to the whole heart.

Completed 2005

David Nordsletten16 (Auckland Doctoral scholarship)

Ventricular CFD and valve mechanics. Commenced 2004

Matthew Morgan

Computer models of human kidney. Commenced Jan 2006

Jessica Jor (FRST Top-achiever scholarship)

Modeling structure/function relations in skin. Commenced Jan 2006

Annalisa Swan (Auckland Doctoral scholarship) Principle supervisor Merryn Tawhai

A computational model of pulmonary gas exchange. Commenced March 2006

Harvey Ho

Cerebral aneurysm. Commenced March 2006

David Cumin (AMRF scholarship) Principal supervisor Alan Merry

Simulation in anaesthesia. Commenced March 2006

Jagir Hussan (ABI scholarship)

Modelling the influence of iron channel distributions in cardiac arrhythmias. Commenced March 2006

Xiao Bo Lu (ABI scholarship)

Models of the vocal tract and speech production. Commenced March 2007

Abhishek Tiwari (ABI scholarship)

Modeling hormone dynamics. Commenced March 2008

Alice Hung

An anatomically based biomechanics model of the face for simulation of facial expressions. Commenced March 2008

David Ladd

Vortical flow in aortic stent-grafts. Commenced July 2008.

Naz Ebrahimi

Modelling signaling pathways in the C-looping phase of embryological cardiac growth, Commenced 2013

Hashem Yousefi

Modelling tissue growth in the C-looping phase of embryological cardiac growth, Commenced 2014

Supervision of Masters students Iain A. Anderson1 "Cardiac heat transfer". Completed ME 1983.

Alistair A. Young1 "Image processing of coronary angiograms". Completed ME 1986.

Anthony J. Shacklock1 "Biaxial testing of cardiac tissue". Completed ME 1987.

Anthony S.D. Mayne1 "The biaxial material properties of fresh and bioprosthetic poreine aortic valve leaflets".

Completed MHB 1988.

Alistair G. Hookings "A computer model of the electrical activation of the heart". Completed ME 1988.

Fiona M. McPheat "A finite element analysis of yacht sails". Completed ME 1989.

Stephen Ohms2 "In vitro and mathematical models of the extravascular diffusion of amsacrine". Completed ME 1989.

David A. Mawson3 "A model of the O2 consumption of the isolated, saline perfused guinea-pig heart".

Completed ME 1991.

This thesis was awarded the runner-up prize in the Pre-doctoral Thesis Competition of the N.Z. Maths Society in 1993.

John W. Shirley

“The computational modelling of two-dimensional boundary layer separation”. Completed 1996.

Merryn Howatson9

44

“An anatomically accurate mathematical model of the human pulmonary acinus”. Completed 1995.

Peter R. Apperley

“Biaxial testing of biomaterials”. Completed 1995.

Glen.M. Harris5

“Auditory evoked potentials”. Completed 1996.

Julia Kar10

“Material testing and stress analysis of biomaterials”. Commenced 1996.

David Nickerson

“Electro-mechanical coupling”. Completed 1998.

Richard Boyes6 “Ventricular fluid mechanics”. Completed 1998.

Sarah-Jane Guild3

“Cardiac metabolism”. Completed 1998.

David Hall

“Modeling the atrio-ventricular node”. Completed 2002.

Sally Che Principal supervisor John Philips.

Mechanical influences on transport in the lens. Commenced March 2007

1 Jointly supervised with Assoc. Prof. B.H. Smaill, Dept. of Physiology. 2 Jointly supervised with Dr W.R. Wilson, Dept. of Pathology. 3 Jointly supervised with Dr D.S. Loiselle, Dept. of Physiology.

4 Jointly supervised with Prof. J.B. Carman, Dept of Anatomy. 5 Jointly supervised with Dr A.J. Pullan, Dept. of Engineering Science. 6 Jointly supervised with Assoc. Prof. G.D. Mallinson, Dept. of Mechanical Engineering. 7 Jointly supervised with Dr B.J. Davidson, Dept. of Civil Engineering. 8 Jointly supervised with Prof. N. Sharpe, Cardiology, Auckland Hospital. 9 Jointly supervised with Dr E.A. Harris, Green Lane Hospital. 10 Jointly supervised with Dr A.A. Young, Depts of Anatomy and Physiology. 11 Jointly supervised with Dr P. Kelly, Dept. of Engineering Science. 12 Jointly supervised with Dr I.A. Anderson, Dept. of Engineering Science. 13

Jointly supervised with Dr P. Donaldson, Dept. of Physiology. 14

Jointly supervised with Prof J. Kistler, School of Biological Sciences. 15 Jointly supervised with Dr M.P. Nash, Dept. of Engineering Science. 16 Jointly supervised with Dr N.P. Smith, Dept. of Engineering Science.