Cross-species Extrapolation of an Adverse Outcome Pathway ......AOP extrapolation across taxa ....

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Cross-species Extrapolation of an Adverse Outcome Pathway for Ecdysteroid Receptor Activation Carlie A. LaLone University of Minnesota Water Resources Center

Transcript of Cross-species Extrapolation of an Adverse Outcome Pathway ......AOP extrapolation across taxa ....

Page 1: Cross-species Extrapolation of an Adverse Outcome Pathway ......AOP extrapolation across taxa . Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS) • Sequence

Cross-species Extrapolation of an Adverse Outcome Pathway for Ecdysteroid Receptor Activation Carlie A. LaLone University of Minnesota Water Resources Center

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Define the taxonomic domain of applicability

• Adverse outcome pathway development – Ecdysteroid receptor (EcR) activation leading to mortality

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AOP extrapolation across taxa

Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS)

• Sequence based approach to predict relative intrinsic susceptibility – Receptor/enzyme available for the chemical to act upon

• Conservation of MIE: Extrapolate MIE across taxa

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Facilitates a Strategic Approach for Assessing Protein Similarity Across Species

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Conservation of molecular target: Line-of-evidence that MIE may be relevant

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Daphnia magna

Ecdysteroid Receptor

All Protein Sequences in the NCBI protein database

SeqAPASS Query

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SeqAPASS Results Across Taxa

• Query Daphnia magna ecdysteroid receptor

Primary amino acid sequence Ligand binding domain

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Key amino acid residues

• Collaborators developed homology model to identify key residues

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SeqAPASS

• EcR sequence and structural conservation: MIE likely relevant

– Branchiopoda – Insecta – Chilopoda – Arachnida – Malacostraca – Maxillopoda

Taxonomic domain of applicability

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Acknowledgments

• U.S. Environmental Protection Agency

– Daniel Villeneuve – Gerald Ankley

• Computer Sciences Corporation

– Henry Helgen – Steve Walata – Derek Lane

• Norwegian Institute for Water Research (NIVA)

– Knut Erik Tollefsen – You Song – Tore Høgåsen

• Universitetet I Tromsø, The Arctic University of Norway

– Ingebrigt Sylte – Kurt Kristiansen