Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on...

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- 1 - Critical roles of vacuolar invertase in floral organ development and male and 1 female fertilities are revealed through characterization of GhVIN1-RNAi cotton 2 plants 3 4 5 6 Lu Wang # and Yong-Ling Ruan* 7 8 School of Environmental & Life Sciences and 9 Australian-China Research Centre for Crop Improvement 10 The University of Newcastle, 11 Callaghan, NSW 2308, 12 Australia 13 14 #Current address: School of Plant Science, University of Tasmania, Hobart, TAS 15 7001, Australia 16 17 *Correspondance: 18 19 Yong-Ling Ruan 20 Fax: 61 2 49216572 21 E-mail: [email protected] 22 23 24 Author contribution: 25 Y.-L.R. conceived the project and supervised the research; Y.-L.R. and 26 L.W. designed the research plans; L.W. performed the research; L.W. and Y.-L.R. 27 analysed the data; L.W. and Y.-L.R. wrote the article. 28 29 Funding: 30 This work was supported by Chinese National Science Foundation (Grant 30425043) 31 and Australian Research Council (DP110104931 to Y-L Ruan). 32 33 34 35 36 37 Plant Physiology Preview. Published on March 11, 2016, as DOI:10.1104/pp.16.00197 Copyright 2016 by the American Society of Plant Biologists https://plantphysiol.org Downloaded on December 12, 2020. - Published by Copyright (c) 2020 American Society of Plant Biologists. All rights reserved.

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Page 1: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Critical roles of vacuolar invertase in floral organ development and male and 1

female fertilities are revealed through characterization of GhVIN1-RNAi cotton 2

plants 3

4

5

6

Lu Wang and Yong-Ling Ruan 7

8 School of Environmental amp Life Sciences and 9 Australian-China Research Centre for Crop Improvement 10 The University of Newcastle 11 Callaghan NSW 2308 12 Australia 13 14 Current address School of Plant Science University of Tasmania Hobart TAS 15 7001 Australia 16 17 Correspondance 18 19 Yong-Ling Ruan 20 Fax 61 2 49216572 21 E-mail Yong-LingRuannewcastleeduau 22 23 24 Author contribution 25 Y-LR conceived the project and supervised the research Y-LR and 26 LW designed the research plans LW performed the research LW and Y-LR 27 analysed the data LW and Y-LR wrote the article 28

29

Funding 30

This work was supported by Chinese National Science Foundation (Grant 30425043) 31

and Australian Research Council (DP110104931 to Y-L Ruan) 32

33

34

35

36

37

Plant Physiology Preview Published on March 11 2016 as DOI101104pp1600197

Copyright 2016 by the American Society of Plant Biologists

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ABSTRACT 38

Seed number and quality are key traits determining plant fitness and crop yield and 39

rely on combined competence in male and female fertilities Sucrose (Suc) 40

metabolism is central to reproductive success It remains elusive though how 41

individual Suc metabolic enzymes may regulate the complex reproductive processes 42

Here by silencing vacuolar invertase (VIN) genes in cotton reproductive organs we 43

revealed diverse roles that VIN play in multiple reproductive processes A set of 44

phenotypic and genetic studies showed significant reductions of viable seeds in the 45

GhVIN1-RNAi plants attributed to pollination failure and impaired male and female 46

fertilities The former was largely owing to the spatial mismatch between style and 47

stamen and delayed pollen release from the anthers whereas male defects came from 48

poor pollen viability The transgenic stamen exhibited altered expression of genes 49

responsible for starch metabolism and auxin and jasmonic acid signaling Further 50

analyses identified the reduction of GhVINs expression in the seed coat as the major 51

cause for the reduced female fertility which appeared to disrupt the expression of 52

some key genes involved in trehalose and auxin metabolism and signaling leading to 53

programmed cell death or growth repression in the filial tissues Together the data 54

provide an unprecedented example that VIN is required for synchronizing style and 55

stamen development and the formation of male and female fertility for seed 56

development in a crop species cotton 57

58

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INTRODUCTION 59

In flowering plants sexual reproduction involves (i) the gametophytic development 60

producing sperms in the pollens within the anthers and eggs in the ovules embedded 61

within the ovaries (ii) accomplishment of specific interactions between mature 62

pollens and the receptive stigma followed by pollen tube elongation down to the 63

ovules (iii) gamete fusion known as double fertilization resulting in a diploid 64

embryo nucleus and a triploid endosperm nucleus and (iv) the coordinated 65

development among seed coat embryo and endosperm to generate a viable seed 66

Accompanied with the distinctive cellular and developmental changes during these 67

processes complex molecular and biochemical pathways have evolved to regulate 68

each step to ensure the success of seed production 69

Sugars are important energy source building blocks osmotic solutes and signaling 70

molecules (Ruan 2014) As the principal product of photosynthesis sucrose (Suc) is 71

the primary carbon translocated from source leaves to non-photosynthetic sinks 72

including reproductive organs Prior to its use for metabolism and biosynthesis Suc 73

needs to be degraded into hexoses by either Suc synthase (Sus EC 24113) or 74

invertase (INV EC 32126) Sus cleaves Suc in the presence of UDP into 75

UDP-glucose and fructose (Fru) and is largely involved in cell wall and starch 76

biosynthesis in sink organs (Chourey et al 1998 Brill et al 2011) and maintaining 77

sink strength (Pozueta-Romero et al 1999 Xu et al 2012) especially in crop species 78

(Ruan 2014) INV on the other hand hydrolyzes Suc into Fru and glucose (Glc) and 79

plays essential roles in plant development and stress responses (Koch 2004 Ruan 80

2014) Based on their subcellular location INV can be classified as cell wall invertase 81

(CWIN) cytoplasmic invertase (CIN) and vacuolar invertase (VIN) 82

The involvement of INVs in pollen development has been observed in a wide range 83

of species (Maddison et al 1999 Goetz et al 2001 Proels et al 2006 Castro and 84

Cleacutement 2007 Engelke et al 2010 Pressman et al 2012) especially under stress 85

conditions such as drought (Koonjul et al 2005) and cold (Oliver et al 2005) 86

Positive correlations between INV activities and seed and fruit development have also 87

been reported in maize (eg Cheng et al 1996 Boyer and McLaughlin 2007) rice 88

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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89

al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90

tomato (Zanor et al 2009 Jin et al 2009) 91

Apart from their major roles in primary metabolism INVs are also intimately 92

involved in sugar signaling For example the VIN-derived hexose signaling likely 93

plays an indispensable role in cotton fiber (seed trichome) initiation through 94

regulating the expression of some MYB transcription factors and auxin signaling 95

genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96

signaling pathways have been implicated during the development of wheat pollen 97

(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98

al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99

2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100

Millaacuten-Cantildeongo et al 2014) 101

Despite the progress outlined above there is a lack of understanding on whether INVs 102

modulate both male and female fertilities and if so how the regulation may be 103

achieved at the developmental cellular and molecular levels Filling this major 104

knowledge gap is essential for better understanding the regulation of plant 105

reproductive development and for designing better approaches to improve crop 106

reproductive success for seed and fruit production under climate change (Ruan 2014) 107

Here we provided a comprehensive analysis on the roles of VIN in reproductive 108

development using VIN-suppressed cotton as a model The data obtained revealed that 109

VIN is required for both male and female fertilities and its reduced expression in seed 110

coat led to programmed cell death or growth repression in the filial tissues 111

112

113

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RESULTS 114

Silencing GhVIN1 resulted in high proportion of unviable seeds 115

In our previous study (Wang et al 2014) a RNA interference construct against a 116

major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117

RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118

development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119

significant reduction of VIN activity in cotton seeds and consequently a fiberless 120

seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121

seed epidermis we also observed a significant reduction of seeds in the 122

GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123

Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124

buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125

number of bolls that set and viable seeds per boll were reduced in all the transgenic 126

lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127

The ovule number per boll however was not significantly affected in the transgenic 128

plants (Figure S2) excluding the possibility of reduced ovule development as a 129

potential cause for the reduced seed production The transgenic lines examined were 130

homozygous for the transgenes based on PCR-detection of the presence of RDL 131

promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132

A close phenotypic analysis identified two types of unviable seeds from the 133

transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134

seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135

after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136

maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137

latter were expanded to some extent but were hollow or only partially filled inside the 138

seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139

(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140

to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141

average of 50 78 36 35 34 and 49 of total ovules failed to expand 142

(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143

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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144

becoming under-developed seeds in the corresponding lines (Figure 2M) The 145

presence of the higher proportion of these two types of unviable seeds led to 146

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significant reduction of viable seeds across the transgenic lines examined (Figure 147

2M) 148

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To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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- 24 -

slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 2: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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ABSTRACT 38

Seed number and quality are key traits determining plant fitness and crop yield and 39

rely on combined competence in male and female fertilities Sucrose (Suc) 40

metabolism is central to reproductive success It remains elusive though how 41

individual Suc metabolic enzymes may regulate the complex reproductive processes 42

Here by silencing vacuolar invertase (VIN) genes in cotton reproductive organs we 43

revealed diverse roles that VIN play in multiple reproductive processes A set of 44

phenotypic and genetic studies showed significant reductions of viable seeds in the 45

GhVIN1-RNAi plants attributed to pollination failure and impaired male and female 46

fertilities The former was largely owing to the spatial mismatch between style and 47

stamen and delayed pollen release from the anthers whereas male defects came from 48

poor pollen viability The transgenic stamen exhibited altered expression of genes 49

responsible for starch metabolism and auxin and jasmonic acid signaling Further 50

analyses identified the reduction of GhVINs expression in the seed coat as the major 51

cause for the reduced female fertility which appeared to disrupt the expression of 52

some key genes involved in trehalose and auxin metabolism and signaling leading to 53

programmed cell death or growth repression in the filial tissues Together the data 54

provide an unprecedented example that VIN is required for synchronizing style and 55

stamen development and the formation of male and female fertility for seed 56

development in a crop species cotton 57

58

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INTRODUCTION 59

In flowering plants sexual reproduction involves (i) the gametophytic development 60

producing sperms in the pollens within the anthers and eggs in the ovules embedded 61

within the ovaries (ii) accomplishment of specific interactions between mature 62

pollens and the receptive stigma followed by pollen tube elongation down to the 63

ovules (iii) gamete fusion known as double fertilization resulting in a diploid 64

embryo nucleus and a triploid endosperm nucleus and (iv) the coordinated 65

development among seed coat embryo and endosperm to generate a viable seed 66

Accompanied with the distinctive cellular and developmental changes during these 67

processes complex molecular and biochemical pathways have evolved to regulate 68

each step to ensure the success of seed production 69

Sugars are important energy source building blocks osmotic solutes and signaling 70

molecules (Ruan 2014) As the principal product of photosynthesis sucrose (Suc) is 71

the primary carbon translocated from source leaves to non-photosynthetic sinks 72

including reproductive organs Prior to its use for metabolism and biosynthesis Suc 73

needs to be degraded into hexoses by either Suc synthase (Sus EC 24113) or 74

invertase (INV EC 32126) Sus cleaves Suc in the presence of UDP into 75

UDP-glucose and fructose (Fru) and is largely involved in cell wall and starch 76

biosynthesis in sink organs (Chourey et al 1998 Brill et al 2011) and maintaining 77

sink strength (Pozueta-Romero et al 1999 Xu et al 2012) especially in crop species 78

(Ruan 2014) INV on the other hand hydrolyzes Suc into Fru and glucose (Glc) and 79

plays essential roles in plant development and stress responses (Koch 2004 Ruan 80

2014) Based on their subcellular location INV can be classified as cell wall invertase 81

(CWIN) cytoplasmic invertase (CIN) and vacuolar invertase (VIN) 82

The involvement of INVs in pollen development has been observed in a wide range 83

of species (Maddison et al 1999 Goetz et al 2001 Proels et al 2006 Castro and 84

Cleacutement 2007 Engelke et al 2010 Pressman et al 2012) especially under stress 85

conditions such as drought (Koonjul et al 2005) and cold (Oliver et al 2005) 86

Positive correlations between INV activities and seed and fruit development have also 87

been reported in maize (eg Cheng et al 1996 Boyer and McLaughlin 2007) rice 88

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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89

al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90

tomato (Zanor et al 2009 Jin et al 2009) 91

Apart from their major roles in primary metabolism INVs are also intimately 92

involved in sugar signaling For example the VIN-derived hexose signaling likely 93

plays an indispensable role in cotton fiber (seed trichome) initiation through 94

regulating the expression of some MYB transcription factors and auxin signaling 95

genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96

signaling pathways have been implicated during the development of wheat pollen 97

(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98

al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99

2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100

Millaacuten-Cantildeongo et al 2014) 101

Despite the progress outlined above there is a lack of understanding on whether INVs 102

modulate both male and female fertilities and if so how the regulation may be 103

achieved at the developmental cellular and molecular levels Filling this major 104

knowledge gap is essential for better understanding the regulation of plant 105

reproductive development and for designing better approaches to improve crop 106

reproductive success for seed and fruit production under climate change (Ruan 2014) 107

Here we provided a comprehensive analysis on the roles of VIN in reproductive 108

development using VIN-suppressed cotton as a model The data obtained revealed that 109

VIN is required for both male and female fertilities and its reduced expression in seed 110

coat led to programmed cell death or growth repression in the filial tissues 111

112

113

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RESULTS 114

Silencing GhVIN1 resulted in high proportion of unviable seeds 115

In our previous study (Wang et al 2014) a RNA interference construct against a 116

major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117

RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118

development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119

significant reduction of VIN activity in cotton seeds and consequently a fiberless 120

seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121

seed epidermis we also observed a significant reduction of seeds in the 122

GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123

Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124

buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125

number of bolls that set and viable seeds per boll were reduced in all the transgenic 126

lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127

The ovule number per boll however was not significantly affected in the transgenic 128

plants (Figure S2) excluding the possibility of reduced ovule development as a 129

potential cause for the reduced seed production The transgenic lines examined were 130

homozygous for the transgenes based on PCR-detection of the presence of RDL 131

promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132

A close phenotypic analysis identified two types of unviable seeds from the 133

transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134

seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135

after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136

maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137

latter were expanded to some extent but were hollow or only partially filled inside the 138

seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139

(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140

to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141

average of 50 78 36 35 34 and 49 of total ovules failed to expand 142

(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143

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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144

becoming under-developed seeds in the corresponding lines (Figure 2M) The 145

presence of the higher proportion of these two types of unviable seeds led to 146

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significant reduction of viable seeds across the transgenic lines examined (Figure 147

2M) 148

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To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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INTRODUCTION 59

In flowering plants sexual reproduction involves (i) the gametophytic development 60

producing sperms in the pollens within the anthers and eggs in the ovules embedded 61

within the ovaries (ii) accomplishment of specific interactions between mature 62

pollens and the receptive stigma followed by pollen tube elongation down to the 63

ovules (iii) gamete fusion known as double fertilization resulting in a diploid 64

embryo nucleus and a triploid endosperm nucleus and (iv) the coordinated 65

development among seed coat embryo and endosperm to generate a viable seed 66

Accompanied with the distinctive cellular and developmental changes during these 67

processes complex molecular and biochemical pathways have evolved to regulate 68

each step to ensure the success of seed production 69

Sugars are important energy source building blocks osmotic solutes and signaling 70

molecules (Ruan 2014) As the principal product of photosynthesis sucrose (Suc) is 71

the primary carbon translocated from source leaves to non-photosynthetic sinks 72

including reproductive organs Prior to its use for metabolism and biosynthesis Suc 73

needs to be degraded into hexoses by either Suc synthase (Sus EC 24113) or 74

invertase (INV EC 32126) Sus cleaves Suc in the presence of UDP into 75

UDP-glucose and fructose (Fru) and is largely involved in cell wall and starch 76

biosynthesis in sink organs (Chourey et al 1998 Brill et al 2011) and maintaining 77

sink strength (Pozueta-Romero et al 1999 Xu et al 2012) especially in crop species 78

(Ruan 2014) INV on the other hand hydrolyzes Suc into Fru and glucose (Glc) and 79

plays essential roles in plant development and stress responses (Koch 2004 Ruan 80

2014) Based on their subcellular location INV can be classified as cell wall invertase 81

(CWIN) cytoplasmic invertase (CIN) and vacuolar invertase (VIN) 82

The involvement of INVs in pollen development has been observed in a wide range 83

of species (Maddison et al 1999 Goetz et al 2001 Proels et al 2006 Castro and 84

Cleacutement 2007 Engelke et al 2010 Pressman et al 2012) especially under stress 85

conditions such as drought (Koonjul et al 2005) and cold (Oliver et al 2005) 86

Positive correlations between INV activities and seed and fruit development have also 87

been reported in maize (eg Cheng et al 1996 Boyer and McLaughlin 2007) rice 88

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89

al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90

tomato (Zanor et al 2009 Jin et al 2009) 91

Apart from their major roles in primary metabolism INVs are also intimately 92

involved in sugar signaling For example the VIN-derived hexose signaling likely 93

plays an indispensable role in cotton fiber (seed trichome) initiation through 94

regulating the expression of some MYB transcription factors and auxin signaling 95

genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96

signaling pathways have been implicated during the development of wheat pollen 97

(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98

al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99

2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100

Millaacuten-Cantildeongo et al 2014) 101

Despite the progress outlined above there is a lack of understanding on whether INVs 102

modulate both male and female fertilities and if so how the regulation may be 103

achieved at the developmental cellular and molecular levels Filling this major 104

knowledge gap is essential for better understanding the regulation of plant 105

reproductive development and for designing better approaches to improve crop 106

reproductive success for seed and fruit production under climate change (Ruan 2014) 107

Here we provided a comprehensive analysis on the roles of VIN in reproductive 108

development using VIN-suppressed cotton as a model The data obtained revealed that 109

VIN is required for both male and female fertilities and its reduced expression in seed 110

coat led to programmed cell death or growth repression in the filial tissues 111

112

113

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RESULTS 114

Silencing GhVIN1 resulted in high proportion of unviable seeds 115

In our previous study (Wang et al 2014) a RNA interference construct against a 116

major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117

RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118

development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119

significant reduction of VIN activity in cotton seeds and consequently a fiberless 120

seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121

seed epidermis we also observed a significant reduction of seeds in the 122

GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123

Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124

buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125

number of bolls that set and viable seeds per boll were reduced in all the transgenic 126

lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127

The ovule number per boll however was not significantly affected in the transgenic 128

plants (Figure S2) excluding the possibility of reduced ovule development as a 129

potential cause for the reduced seed production The transgenic lines examined were 130

homozygous for the transgenes based on PCR-detection of the presence of RDL 131

promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132

A close phenotypic analysis identified two types of unviable seeds from the 133

transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134

seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135

after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136

maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137

latter were expanded to some extent but were hollow or only partially filled inside the 138

seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139

(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140

to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141

average of 50 78 36 35 34 and 49 of total ovules failed to expand 142

(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143

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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144

becoming under-developed seeds in the corresponding lines (Figure 2M) The 145

presence of the higher proportion of these two types of unviable seeds led to 146

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significant reduction of viable seeds across the transgenic lines examined (Figure 147

2M) 148

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To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964

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Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13

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Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

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Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

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Page 4: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89

al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90

tomato (Zanor et al 2009 Jin et al 2009) 91

Apart from their major roles in primary metabolism INVs are also intimately 92

involved in sugar signaling For example the VIN-derived hexose signaling likely 93

plays an indispensable role in cotton fiber (seed trichome) initiation through 94

regulating the expression of some MYB transcription factors and auxin signaling 95

genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96

signaling pathways have been implicated during the development of wheat pollen 97

(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98

al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99

2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100

Millaacuten-Cantildeongo et al 2014) 101

Despite the progress outlined above there is a lack of understanding on whether INVs 102

modulate both male and female fertilities and if so how the regulation may be 103

achieved at the developmental cellular and molecular levels Filling this major 104

knowledge gap is essential for better understanding the regulation of plant 105

reproductive development and for designing better approaches to improve crop 106

reproductive success for seed and fruit production under climate change (Ruan 2014) 107

Here we provided a comprehensive analysis on the roles of VIN in reproductive 108

development using VIN-suppressed cotton as a model The data obtained revealed that 109

VIN is required for both male and female fertilities and its reduced expression in seed 110

coat led to programmed cell death or growth repression in the filial tissues 111

112

113

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RESULTS 114

Silencing GhVIN1 resulted in high proportion of unviable seeds 115

In our previous study (Wang et al 2014) a RNA interference construct against a 116

major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117

RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118

development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119

significant reduction of VIN activity in cotton seeds and consequently a fiberless 120

seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121

seed epidermis we also observed a significant reduction of seeds in the 122

GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123

Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124

buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125

number of bolls that set and viable seeds per boll were reduced in all the transgenic 126

lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127

The ovule number per boll however was not significantly affected in the transgenic 128

plants (Figure S2) excluding the possibility of reduced ovule development as a 129

potential cause for the reduced seed production The transgenic lines examined were 130

homozygous for the transgenes based on PCR-detection of the presence of RDL 131

promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132

A close phenotypic analysis identified two types of unviable seeds from the 133

transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134

seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135

after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136

maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137

latter were expanded to some extent but were hollow or only partially filled inside the 138

seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139

(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140

to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141

average of 50 78 36 35 34 and 49 of total ovules failed to expand 142

(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143

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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144

becoming under-developed seeds in the corresponding lines (Figure 2M) The 145

presence of the higher proportion of these two types of unviable seeds led to 146

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significant reduction of viable seeds across the transgenic lines examined (Figure 147

2M) 148

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To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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- 24 -

slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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RESULTS 114

Silencing GhVIN1 resulted in high proportion of unviable seeds 115

In our previous study (Wang et al 2014) a RNA interference construct against a 116

major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117

RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118

development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119

significant reduction of VIN activity in cotton seeds and consequently a fiberless 120

seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121

seed epidermis we also observed a significant reduction of seeds in the 122

GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123

Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124

buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125

number of bolls that set and viable seeds per boll were reduced in all the transgenic 126

lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127

The ovule number per boll however was not significantly affected in the transgenic 128

plants (Figure S2) excluding the possibility of reduced ovule development as a 129

potential cause for the reduced seed production The transgenic lines examined were 130

homozygous for the transgenes based on PCR-detection of the presence of RDL 131

promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132

A close phenotypic analysis identified two types of unviable seeds from the 133

transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134

seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135

after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136

maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137

latter were expanded to some extent but were hollow or only partially filled inside the 138

seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139

(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140

to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141

average of 50 78 36 35 34 and 49 of total ovules failed to expand 142

(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143

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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144

becoming under-developed seeds in the corresponding lines (Figure 2M) The 145

presence of the higher proportion of these two types of unviable seeds led to 146

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significant reduction of viable seeds across the transgenic lines examined (Figure 147

2M) 148

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To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 6: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144

becoming under-developed seeds in the corresponding lines (Figure 2M) The 145

presence of the higher proportion of these two types of unviable seeds led to 146

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significant reduction of viable seeds across the transgenic lines examined (Figure 147

2M) 148

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To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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1045

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Page 7: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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significant reduction of viable seeds across the transgenic lines examined (Figure 147

2M) 148

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To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 8: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 8 -

To explore the cellular and molecular basis of the observed seed phenotype 149

(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150

for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151

seeds while the latter two lines represent those with high ratio of under-developed 152

seeds (Figure 2) The flower bud number was not significantly affected in these three 153

lines as compared to the WT (Figure 1A) 154

155

GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156

dehiscence and low pollen viability 157

The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158

somehow unexpected given VIN has been typically considered to regulate cell 159

enlargement (Wang et al 2010) The finding prompted us to investigate the 160

underlying developmental basis One surprising observation was that the 161

GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162

of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163

3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164

The stigma protrusion well above the stamen was owing to the increased style lengths 165

as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166

as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167

average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168

respectively (Figure 3B) 169

We also observed a delayed dehiscence in a proportion of the transgenic flowers 170

(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171

Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172

landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173

Anther opening requires cellular degeneration of septum and stomium and 174

secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175

al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176

emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177

much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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- 30 -

from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

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Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

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Page 9: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179

endothecium of those anthers Histological analyses also revealed that 50 and 31 180

of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

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Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

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Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

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Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

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Page 10: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182

the impaired septum degeneration and endothecium wall thickening are the likely 183

cellular basis for the delayed anther dehiscence in the RNAi lines 184

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

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Page 11: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Starch accumulation in filament and anther-filament junction region serves as a 185

carbon source for generating soluble sugars prior to anthesis to draw water from 186

anther wall osmotically thereby contributing to anther dehiscence and opening 187

(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188

revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189

transgenic filaments and especially their joint area with anthers exhibited much 190

reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191

was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192

anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193

anther-filament joint region may represent a metabolic basis for the delay of anther 194

dehiscence in the RNAi stamen 195

Pollen viability staining with FDA revealed significantly reduced viable pollens 196

in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197

exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198

elongation (Figure S4A) A certain number of pollen tubes however were able to 199

reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200

201

Genetic evidence that both male and female fertilities were impaired in the 202

GhVIN1-RNAi cotton plants 203

To test whether the reduced seed set in the transgenic plants was caused solely by 204

insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205

cottons with their respective pollens To analyze the proportions of the three types of 206

seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207

created a generalized linear mixed model (GLMM) with a binomial error structure 208

and logistic link function (see method for details) GLMM has been widely used in 209

genetics and evolution studies for analyzing complex biological systems without 210

ignoring the random effects or violating the statistical assumptions on normal 211

distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212

Bolker et al 2009) 213

Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

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Page 12: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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under natural condition (Figure 5A) It however increased seed set in the transgenic 215

lines to some extent as compared to their respective control sets (Figure 5A) 216

Accordingly the proportion of un- and under-developed seeds was reduced by 217

hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218

however that hand-pollination only partially restore seed set (Figure 5A) indicating 219

that pollination deficiency is not the only factor accounting for low seed production in 220

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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- 30 -

from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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the GhVIN1 RNAi plants 221

We then performed reciprocal cross between WT and transgenic lines to dissect the 222

relative paternal and maternal contributions to reduced seed production in the RNAi 223

plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224

self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225

reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226

stigma with WT pollens increased viable seed percentage to some extent but not to 227

the level in WT (Figure 5B) The data show that both maternal and paternal defects 228

contribute to seed infertility in GhVIN1 RNAi plants 229

Interestingly compared to that of the WT self-pollination the proportion of 230

under-developed seed remained unaffected by pollination of the WT flower with 231

pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232

under-developed seed was observed between the RNAi times WT hybrids and RNAi 233

self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234

type of shrunken seeds In other words the under-developed seeds are mainly derived 235

from maternal defects By contrast however pollination of the WT stigma with the 236

RNAi pollens increased the proportion of the un-developed seeds as compared to that 237

of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238

reduced percentage of un-developed seeds as compared to the respective 239

self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240

contribute to the production of un-developed seeds Additionally the proportion of 241

undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242

WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243

A) suggesting an evolvement of maternal defect for the undeveloped seed 244

Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245

2012) To assess if the poor seed set may relate to reduced assimilate availability for 246

individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247

remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248

slightly increased seed set in the WT but with no significant effect on the RNAi lines 249

(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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1045

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compromised assimilate supply 251

252

RNAi-mediated suppression of GhVIN expression led to a significant decline in 253

VIN activity in stamen 254

To gain insights into the roles of GhVINs in anther we first examined its cellular 255

expression patterns by performing in situ hybridization in WT anthers using an RNA 256

antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257

GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258

probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259

sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260

pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261

the RDL promoter used to driven the RNAi construct was indeed active in pollen 262

grains and in the top part of filaments connecting anthers transformed with RDL- 263

β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264

be targeted by the RNAi construct for degradation in the regions 265

Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266

GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267

61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268

in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269

RNAi construct Consequently VIN activity was significantly decreased in the 270

stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271

degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272

level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273

except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274

level (Figures 6 E and F) The reduction of VIN activity was associated with a 275

decrease in CIN activity from lines 15-4-2 and 61-9-1 276

Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277

(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278

(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279

failure leading to un-developed seeds (Figures 1-2) 280

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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1045

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281

GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282

starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

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expression of auxin signaling genes 284

To explore the molecular basis of the VIN-mediated regulation of stamen 285

development and anther dehiscence we examined the potential effects of reduced 286

VIN activity on the expression of genes responsible for carbohydrate allocation and 287

hormonal function in -1d stamen The transcript levels of two ADP-glucose 288

pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289

enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290

three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291

in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292

α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293

that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294

mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295

transporters and hexokinase and Glc and Fru content (Figure S7) 296

Apart from starch metabolism auxin also plays important roles in filament 297

elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298

2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299

roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300

us to investigate the expressions of auxin-related genes in -1 d stamen Several 301

stamen-expressed candidate genes involved in auxin biosynthesis transport and 302

perception were chosen to measure their mRNA levels based on previous studies (eg 303

Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304

GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305

The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306

whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307

exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308

No difference was observed in the transcript levels between the transgenic and the WT 309

stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310

auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311

(Figure S8) 312

In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314

2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315

signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316

GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317

anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318

al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319

in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320

with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321

remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322

the expression of these JA signaling genes in the stamen 323

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

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Page 18: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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324

Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325

style or ovule 326

In addition to the low paternal fertility maternal defect was also found to contribute to 327

poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328

ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329

promoter used to drive the transgene expression was not active in cotton ovules 330

(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331

were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332

ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333

Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334

tissues that showed no difference between the RNAi and WT plants (Figure S9) 335

Together both styles and ovules can be excluded as the source of maternal defects In 336

other words the problem comes from the seeds 337

338

Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339

death or growth arrest in the filial tissue 340

The un-developed seedsovules remained in the size of ovule with no or little 341

expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342

changes underlying the growth arrest however must have happened beforehand 343

Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344

with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345

and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346

seeds to examine possible PCD in the GhVIN1-RNAi seeds 347

As a technical positive control seed sections were treated with DNase which 348

resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349

8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350

8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351

no TUNEL positive signals were observed in the WT seed derived from fertilized 352

ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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- 24 -

slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 19: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354

15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355

seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356

reflecting the contribution of paternal defect to the undeveloped seed the others 357

displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 20: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359

seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360

cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361

tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362

weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363

indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364

the data matched with the early genetic analyses that the un-developed seeds are 365

largely due to paternal defects with a small portion of it attributable to maternal 366

defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367

reaction with similar results obtained (Figure S10) 368

In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369

coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370

(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371

and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372

(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373

Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374

(Figure 9 F-G) 375

Apart from the un-developed seeds the transgenic cotton bolls also produced 376

some under-developed seeds which were able to expand to a certain extent (Figure 2I 377

and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378

the normally-developed seeds have produced torpedo embryos with cellularized 379

endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380

the globular-heart embryo stage with limited or abnormal endosperm cellularization 381

(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382

endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383

transgenic seeds embryo development were stunted with residual endosperm tissue 384

remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385

normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386

GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387

tissues growth was not due to physical constrain imposed by the seed coat 388

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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- 24 -

slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

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Page 21: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389

disrupted expression of genes for trehalose and auxin metabolism and signaling 390

Finally we examined how suppression of GhVINs in the maternal seed tissue could 391

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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- 30 -

from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 22: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392

At this stage the un-developed ovule-like seeds were readily distinguishable and 393

removed from the samples and seed coat and filial tissues could be easily separated 394

qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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- 24 -

slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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- 25 -

of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396

filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397

(Figure 9) and genetic evidence that the under-developed seed phenotype was 398

predominately under maternal control (Figure S5D) As compared to that in WT the 399

GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400

of that in WT) in about half of the tested samples (replicates a) but was not or only 401

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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 24: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 24 -

slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402

used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403

normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404

likely the that cotton bolls with high proportions of under-developed seeds would 405

have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406

probably contained those with lower percentage of under-developed seeds It is 407

worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408

et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409

the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410

GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411

not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412

expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413

S11B) 414

The above analyses show that repression of GhVINs in seed coat was most likely 415

the cause of maternal defects it remains intriguing how this could result in growth 416

arrest or even cell death in the filial tissue without obvious effect on seed coat 417

development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418

intermediate in trehalose metabolism has emerged as a global regulator of carbon 419

metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420

Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421

synthase 1 mutant develop more slowly than wild type and do not progress through 422

the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423

examined whether expression of T6P-matabolism related genes was altered in the 424

GhVIN1-RNAi cotton seeds 425

Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426

three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427

the seed coat while the transcript levels of two TPS genes were largely unaffected in 428

the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429

strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430

but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431

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- 25 -

of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 25: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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of under-developed seeds) across all the lines examined indicating a response to the 432

severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433

a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434

11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435

replicates a across the three RNAi lines (Figure 11B) 436

The formation of a viable seeds requires effective communication among the 437

maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438

coordinated development One of the most important signaling molecules required for 439

this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440

of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441

signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442

biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443

auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444

greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445

samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446

expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447

to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448

genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449

of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450

increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451

respectively (Figure S12B) Clearly the expressions of genes related to auxin 452

biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453

filial tissues 454

455

456

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 26: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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DISCUSSION 457

Despite the general recognition that reproductive success relies heavily on Suc 458

metabolism to acquire carbon nutrient energy and signals for the development of 459

different reproductive tissues it remains elusive how Suc metabolism couples with 460

complex reproductive development at the cellular and molecular levels (Ruan et al 461

2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462

VIN exerts strong control over floral development and the formation of male and 463

female fertilities thereby acting as a major player for seed set and subsequent 464

development in cotton As such the study provides significant insights into the 465

intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466

development and opens up new perspectives for genetic modifications to enhance 467

crop seed development 468

469

VIN is required for floral morphogenesis and the formation of male and female 470

fertilities 471

The data obtained in this study show that the expression of cotton VIN genes is 472

required for proper pollination fertilization seed set and subsequent seed 473

development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474

exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475

floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476

anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477

viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478

seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479

tissue (Figures 8-10) 480

The above reproductive defects collectively led to the production in the 481

GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482

seedsovules and under-developed seeds The former was resulted from (a) pollination 483

failure because of spatially unmatched development between stamen and pistils or 484

delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485

abortion owing to the nucellus and filial tissue cell death early in seed development 486

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caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 27: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 27 -

caused by maternal defects On the other hand the under-developed seeds were 487

largely attributable to female sterility based on data from reciprocal crosses (Figure 488

S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489

10) Together the analyses identify VIN as a major regulator for diverse reproductive 490

processes from floral development to the formation of male and female fertilities To 491

our knowledge this represents an unprecedented example on the control of such 492

diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493

with our finding there have been no reports on VIN mutants in any crop species as 494

such a mutant is likely reproductively lethal based on what we found in this study 495

Biochemically VIN activity may regulate reproductive development through 496

modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497

modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498

sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499

coupled with Suc influx during cell division of fruit development (Beauvoit et al 500

2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501

cytosolic hexose levels through coupling with the activities of tonoplast sugar 502

transporters Altering cytosolic hexose levels could have profound impact on gene 503

expression through sugar signaling in parallel to its central role in sugar metabolism 504

(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505

and trehalose metabolism and auxin and JA synthesis and signaling in the 506

GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507

gene expression observed in stamen and developing seeds are likely the direct effect 508

of decreased GhVIN gene expression since the intervention did not appear to affect 509

the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510

or sugar transporters (Figure 9 Figures S7 and S11) 511

512

VIN contributes to male fertility probably through impacting on starch 513

metabolism and auxin and JA synthesis and signaling in stamen 514

The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515

release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516

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- 28 -

failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

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- 29 -

547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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- 30 -

from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 28: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517

The delay in pollen release from the transgenic anthers may arise from a 518

combination of (a) incomplete septum degradation and impaired endothecium 519

secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520

to reduced starch accumulation in filament and anther-filament conjunction region 521

(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522

filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523

and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524

stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525

expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526

GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527

down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528

indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529

result in not only a delay in anther dehiscence but also poor pollen viability as starch 530

abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531

2001 Datta et al 2002) 532

Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533

GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534

regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535

et al 2013) Moreover the transgenic stamen was also characterized with declined 536

expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537

receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538

JA metabolism and signaling are of importance in anther differentiation and 539

dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540

et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541

alter the expression of these genes through modulating cytosolic sugar homeostats and 542

sugar signaling Although the exact nature of such a regulation remains to be 543

elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544

and male fertility potentially through VIN-mediated regulation of starch turnover and 545

auxin and JA synthesis and signaling 546

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 29 -

547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

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- 30 -

from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 29: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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547

Seed coat GhVIN expression may be required for adequate sugar supply and 548

balanced sugar and auxin signaling to support filial tissue development 549

Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550

also partially responsible for the generation of un-developed seed and was largely 551

accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552

intriguing finding was that although GhVINs were predominately expressed in the 553

seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554

the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555

negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556

and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557

seed coat to the down regulation of largely maternally-expressed GhVINs 558

One possibility is that VIN activity in the seed coat may be essential for nutrient 559

flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560

phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561

activities and gene expressions have been observed in WT cotton outer seed coat 562

during early seed development (Wang et al 2010) along with strong Sus expression 563

and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564

the outer seed coat are essential for lowering local Suc concentration to facilitate 565

phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566

expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567

and phloem unloading This is indicated by the significant decrease in Glc and Fru 568

content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569

hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570

unloading occurs symplasmically (Palmer et al 2015) 571

For subsequent translocation into the filial tissues in cotton seed assimilates must 572

pass two symplasmically disconnected cellular sites between outer and inner seed 573

coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574

2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575

facilitate the hexose production in these sites Thus it is possible that hexose derived 576

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

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- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 30: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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from the maternal VIN and CWIN activities is the major carbon source transported 577

into the filial tissues of developing cotton seed Indeed hexose could dominate over 578

Suc in their import into endosperm during early seed development in Arabidopsis 579

(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580

underpin the importance of sucrolytic activities in channeling carbon from maternal to 581

filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582

block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583

starvation and even PCD (Figure 8) The correlation between low Glc and activation 584

of some PCD genes has been observed in maize grain under drought (Boyer and 585

McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586

While some seeds were blocked entirely thus becoming ovule-like un-developed 587

seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588

the endosperm and embryo developed to certain extent but became arrested at 589

torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590

seeds After fertilization a signal from the syncytial endosperm is considered to play 591

crucial role in triggering seed coat cell expansion and regulating seed size in 592

Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593

expansion has initiated it develops independently from endosperm and embryo 594

(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595

has received no or impaired initial signal for its growth while the under-developed 596

seeds may have acquired such a signal from the endosperm during nuclear division (~ 597

3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598

developed Consistently the endosperm in the under-developed seed appeared to 599

develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600

al 2008) when its increased sugar demand for cell wall synthesis could become 601

unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602

discussed previously 603

Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604

and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605

trehalose metabolism may have been affected in the transgenic seed which could 606

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- 31 -

compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 32 -

Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 31: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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compromise filial tissue development The effect of trehalose metabolism and 607

signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608

Another well-known signaling molecule involved in seed maternal-filial 609

communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610

disruption of gene expressions in relation to auxin biosynthesis and signaling 611

perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612

observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613

trehalose and auxin metabolism and signaling may also contribute to the blockage of 614

filial development in the under- developed seeds 615

616

VIN along with CWIN could act as a gatekeeper for reproductive success under 617

abiotic stress 618

Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619

resembles the symptoms of plants suffered from abiotic stress For example heat 620

stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621

dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622

2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623

1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624

pollen development under high temperature were associated with reduced expressions 625

of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626

biosynthesis Similarly wheat male reproductive failure under water deficit was 627

related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628

al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629

early target of drought stress during maize ovule abortion (Andersen et al 2002) 630

Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631

VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632

appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633

fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634

sugar homeostasis and signaling 635

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 32: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Materials and Methods 636

Plant growth condition pollination and bud thinning treatments 637

Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638

greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639

generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640

samples were excised from developing flower buds or cotton bolls at the specified day 641

after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642

throughout the whole growth cycle Seed number was counted by boll maturity 643

For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644

pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645

grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646

We collected more than 10000 pollens from a single flower for pollination of a 647

maximum three stigmas to ensure adequate pollination 648

For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649

removed at pinhead square stage (~3 weeks before flowering) 650

651

Pollen germination and pollen tube elongation 652

Pollen grains were collected shortly after anther dehiscence in the morning and 653

immediately tapped onto the germination medium modified from that described by 654

Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655

MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656

collected into one Petri dish as one biological replicate Pollens were incubated in the 657

dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658

pollen grain with pollen tube length longer than or at least equal to grain diameter was 659

considered to be germinated (Kakani et al 2002) Germination rate was determined 660

by dividing number of germinated pollen grain by the total number of pollens Pollen 661

tube length was measured using the Image J program (httprsbinfonihgovij) 662

663

Histological analyses 664

For pollen viability test fresh flowers were collected shortly after germination and 665

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- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 33: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 33 -

pollens were gently tapped into the modified pollen germination medium with an 666

addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667

were examined microscopically under UV excitation and a long-pass GFP emission 668

filter 669

To observe the number of pollens captured by stigma fresh flower were collected 670

at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671

K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672

fluorescence from aniline blue -bound callose under UV 673

For in vivo pollen tube elongation observation stigmas were collected at various 674

times after pollination The tissues were fixed in cold FAA fixation buffer (4 675

formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676

ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677

buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678

squashed gently before observation under UV 679

For anther structure observation -1d anther were fixed dehydrated embedded 680

sectioned stained with toluidine blue and examined according to Regan and Moffatt 681

(1990) To estimate the deposition of callose and the secondary wall thickening the 682

sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683

for 5 min followed by visualization under UV 684

For starch localization -1d anther sections and -1d flower (with sepal and petal 685

removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686

687

RNA extraction and reverse transcription 688

For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689

seed coats or filial tissues from one cotton boll were collected as one biological 690

sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691

was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692

cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693

Oligo dT(20) according to manufacturerrsquos recommendations 694

695

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- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 34: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 34 -

Real-time Quantitative RT-PCR (qPCR) analysis 696

qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697

Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698

cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699

and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700

at the end of amplification Gene-specific primers used for qPCR are listed in Table 701

S1 along with the GenBank accession numbers of the tested genes Primer sets 702

efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703

Software (QIAGEN) 704

Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705

of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706

GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707

most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708

on analysis from RefFinder program 709

(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710

(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711

control genes in this study All calculations of expression levels were performed on 712

quantities (Q) which were calculated via the ΔCq method with the formula Q = 713

(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714

value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715

amount were calculated The levels of target-gene expressions were normalized to the 716

geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717

of internal gene set from the cycle threshold value of the target genes 718

719

In-situ hybirization 720

In situ hybridization experiments were carried out according to Wang et al (2010) 721

722

Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723

Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724

histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725

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- 35 -

Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 35: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726

Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727

according to the manufacturersrsquo instructions Slides were analyzed microscopically 728

(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729

fluorescent channel (fluorometric TUNEL) 730

731

Invertase enzyme assay and sugar measurement 732

Invertase activities and sugar levels were measured enzymatically as described in 733

Wang et al (2010) 734

735

Statistical analyses 736

Unless otherwise specified randomization one-way analysis of variance test 737

(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738

were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739

were performed using JMP 11 statistics software 740

Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741

was used to analyze the cotton seed numbers in the hand-pollination 742

cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743

(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744

treatmentscontrol) randomized design Statistical calculations were performed using 745

SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746

-transformed because data distribution of model residuals were not normal A p-value 747

lt005 was considered significant 748

749

Acknowledgements 750

This work was supported by Chinese National Science Foundation and Australian 751

Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752

Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753

RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754

Colyvas (University of Newcastle Australia) for help in statistical analyses 755

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- 36 -

Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

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- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 36: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Figure legend 756

Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757

compared to that in WT plants 758

Data are presented in box plots where the horizontal line within the box represents the 759

median while the top and bottom of the box represent the value in 75 and 25 of 760

the population respectively The extent of the vertical line indicates the maximum 761

and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762

of each T3 line at full maturity from two independent trials For the viable seed 763

number in (C) data were collected from cotton bolls harvested from at least 6 764

individual plants of each T3 transgenic line with the total boll number indicated 765

above each box plot Asterisks indicate significant differences between WT and a 766

given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767

768

Figure 2 The unviable cotton seeds comprised un-developed and 769

under-developed seeds from the GhVIN1-RNAi lines 770

(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771

lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772

indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773

seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774

1cm 775

(M) The proportions of the fully-developed un-developed and under-developed seeds 776

per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777

30 cotton bolls from 8 individuals of each line in two independent trials Different 778

letters indicate significant difference at plt005 according to one-way ANOVA 779

780

Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781

delayed anther dehiscence and reduced pollen number 782

(A) Representative images of 0-d transgenic flowers with petals removed showing 783

the uncoordinated style protrusion and stamen development in the RNAi plants as 784

compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785

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- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

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Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

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Page 37: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 37 -

brace indicates the stamen region measured in (B) 786

(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787

stamen region and less stamen and pollen numbers per flower Each value is the mean 788

plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789

Asterisks denote significant difference (one-way ANOVA plt005 plt001 790

plt0001) between RNAi and WT 791

(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792

RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793

(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794

day of flowering Styles were stained with aniline blue (left panel bright field) and 795

viewed under UV to show the fluorescence emitted from the stained pollen grains in 796

boxed regions (i ndash iii) 797

Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798

same as that in (C) 799

800

Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801

incomplete septum degradation in a certain number of -1d anthers reduced 802

starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803

germination rates 804

(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805

61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806

(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807

(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808

stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809

absence in G 810

(I) Representative image of WT and transgenic -1d stamens and styles stained with 811

KI-I2 812

(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813

and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814

WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 38 -

much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

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- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 38: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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much weaker staining in filaments and especially at the anther-filament joint regions 816

(yellow arrows and arrowheads respectively) 817

(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818

grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819

malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820

The proportions of viable pollen grains determined by FDA staining was significantly 821

reduced in the transgenic lines as compared to that in WT (O) Each value is the 822

mean plusmn SE from four biological replicates 823

(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824

compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825

each line 826

Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827

(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828

indicate significant difference between RNAi and WT in (O) and (P) based on 829

one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830

831

Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832

thinning(C) on seed fertility in GhVIN1-RNAi lines 833

The percentages of fully-developed seeds in total ovules were calculated for the 834

non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835

after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836

mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837

for each line Different letters indicate significant difference at plt005 according to 838

GLMM 839

840

Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841

and in pollens of WT cotton stamen but were evidently reduced in 842

GhVIN1-RNAi lines resulting in decreased VIN activities 843

(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844

an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 39 -

anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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anther-fiament joint area in (B) as compared to the same region in the sense control 846

(A) 847

(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848

respectively showing strong GhVIN mRNA signals in WT pollens 849

(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850

transgenic stamen Data represent mean plusmn SE (n ge 6) 851

(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852

mean plusmn SE (n= 4) 853

Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854

plt001 plt0001) between RNAi and WT 855

856

Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857

candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858

and jasmonic acid response (D) and altered the expression of some auxin 859

signaling genes (C) 860

Data represent mean values plusmn SE (n ge 6) generated from the same biological 861

replicates as in Figure 6E Asterisks indicate significant differences (one-way 862

ANOVA plt005 plt001 plt0001) between RNAi and WT 863

864

Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865

of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866

Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867

treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868

ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869

GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870

Note compared to the green florescent TUNEL-positive signals detected in the entire 871

seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872

WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873

coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874

filial tissues was under maternal control 875

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- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

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- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

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- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 40: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 40 -

em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876

coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877

878

Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879

were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880

activity 881

(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882

RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883

(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884

fiber cells 885

(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886

compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887

line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888

(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889

mean plusmn SE (n ge6) 890

(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892

(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893

seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894

f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895

in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896

plt001 plt0001) between RNAi and WT 897

898

Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899

growth 900

(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901

seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902

from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903

progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904

whereas the under-developed seeds remained in the globular embryo stage with 905

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

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- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 41: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 41 -

disrupted or limited endosperm cellularization (arrowheads in C and D) 906

(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907

and g) under-developed seeds showed slightly bigger seed size but retarded filial 908

tissue growth 909

(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910

where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911

61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912

endosperm remained 913

Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914

isolated from the seeds presented in the image labelled with same but uppercase 915

letters 916

Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917

in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918

919

Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920

involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921

seed coat and filial tissue 922

Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923

from a given cotton boll in the transgenic line comprised of two populations 924

under-developed seeds and viable seeds which were visually undistinguishable with 925

eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926

reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927

same order of magnitude as in the WT in others replicates (replicates b) 928

Data represent mean values plusmn SE of at least three biological samples Asterisks 929

indicate significant differences (one-way ANOVA plt005 plt001 930

plt0001) between RNAi and WT 931

932

933

934

935

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 42 -

Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

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- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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- 46 -

1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Page 42: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Supplemental files 936

937

Supplemental Table 1 Quantitative real-time PCR primers used in this study 938

939

Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940

generation in comparison with that in WT 941

Data is presented in box plots where the horizontal line within the box represents the 942

median while the top and bottom lines of the box represent viable seed number in 943

75 and 25 of the boll population respectively The extent of the vertical line 944

indicates the maximum and minimum of the data The boll numbers used in the 945

survey harvested from at least 6 individual plants of each line are indicated above the 946

box plots Asterisks indicate significant differences between WT and RNAi 947

(one-way ANOVA plt005 plt001 plt0001) 948

949

Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950

identical to that in WT 951

Data were presented in box plots as explained in Figure S1 Ovules were counted 952

from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953

germination from two independent trials The number of cotton bolls used in each line 954

was listed above each of the box plots Asterisks indicate significant differences 955

between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956

957

Figure S3 Suppression of GhVIN1 affected floral organs formation 958

(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959

on the day of anthesis with stigma encircled by stamen (B) 960

(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961

D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962

and indehiscent anthers (yellow arrowhead in F) 963

(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964

lines include single (G) and double bracts (H) without any other floral organs or 965

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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1045

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Page 43: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

- 43 -

bracts with a tubular leafy structure in the center (I and J) instead of male and female 966

reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967

(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968

969

Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970

and WT cotton plants 971

(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972

value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973

collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974

differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975

WT 976

(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977

stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978

and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979

980

Figure S5 The percentages of un-developed seeds (A C and E) and 981

under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982

crossing (C-D) and bud thinning (E-F) 983

C non-treated control H hand pollinated bolls T+H bud thinning and hand 984

pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985

at least 20 bolls from at least 5 individual plants for each line Different letters 986

indicate significant difference at plt005 according to GLMM 987

988

Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989

(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990

H) 991

Red arrows in A and B indicate GUS signal in the filament and anther joint region 992

Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993

detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994

2 mm in (G-H) 995

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 44 -

Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

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- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

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Page 44: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996

measured soluble sugar levels in -1 d WT and RNAi stamen 997

Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998

according to the fold changes of qPCR mean value in each RNAi line compared to 999

that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000

6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001

all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002

pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003

debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004

hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005

PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006

sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007

1008

Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009

GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010

GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011

Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012

Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013

difference between WT and each RNAi line 1014

1015

Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016

GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017

mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018

ANOVA plt005 plt001) between RNAi and WT 1019

1020

Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021

3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022

(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023

TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024

and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

- 45 -

sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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1045

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Parsed CitationsAndersen MN Asch FA Wu Y Jensen CR Naeligsted H Mogensen VO and Koch KE (2002) Soluble invertase expressionis an early target of stress during the critical abortion sensitive phase of young ovary development in maize Plant Physiol 130591-604

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Artico S Nardeli SM Brilhante O Grossi-de-Sa MF and Alves-Ferreira M (2010) Identification and evaluation of newreference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data BMC Plant Biol 10 49

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Baud S Wuilleme S Lemoine R Kronenberger J Caboche M Lepiniec L and Rochat C (2005) The AtSUC5 sucrosetransporter specifically expressed in the endosperm is involved in early seed development in Arabidopsis Plant J 43 824-836

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beauvoit BP Colombieacute S Monier A Andrieu M-H Biais B Beacutenard C Cheacuteniclet C Dieuaide-Noubhani M Nazaret CMazat J-P and Gibon Y (2014) Model-assisted analysis of sugar metabolism throughout tomato fruit development revealsenzyme and carrier properties in relation to vacuole expansion Plant Cell 26 3224-3242

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Bolker BM Brooks ME Clark CJ Geange SW Poulsen JR Stevens MHH and White J-SS (2009) Generalized linearmixed models a practical guide for ecology and evolution Trends Ecol Evol 24 127-135

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Page 45: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026

outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027

1028

Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029

in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030

For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031

and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032

mean values plusmn SE from six biological replicates for (A) and at least three biological 1033

replicates for (B) 1034

1035

Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036

signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037

compare to those in WT 1038

For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039

suppression respectively as shown in Figure 11 1040

Data represent mean values plusmn SE of at least three biological samples Asterisks 1041

indicate significant differences (one-way ANOVA plt005 plt001 1042

plt0001) between RNAi and WT 1043

1044

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

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Brill E van Thournout M White RG Llewellyn D Campbell PM Engelen S Ruan YL Arioli T and Furbank RT (2011) Anovel isoform of sucrose synthase is targeted to the cell wall during secondary cell wall synthesis in cotton fiber Plant Physiol157 40-54

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Brown PW (2001) Heat stress and cotton yields in Arizona p1-7 In Cotton A College of Agricultural Report Series P-125 Collegeof Agriculture Univ Arizona Tucson AZ

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Burke JJ Velten J and Oliver MJ (2004) In vitro analysis of cotton pollen germination Agronomy Journal 96 359-368Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Castro AJ and Cleacutement C (2007) Sucrose and starch catabolism in the anther of Lilium during its development a comparativestudy among the anther wall locular fluid and microsporepollen fractions Planta 225 1573-1582

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Cecchetti V Altamura M M Falasca G Costantino P and Cardarelli M (2008) Auxin regulates Arabidopsis anther dehiscencepollen maturation and filament elongation Plant Cell 20 1760-1774

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Chaudhury AM Koltunow A Payne T Luo M Tucker MR Dennis ES and Peacock WJ (2001) Control of early seeddevelopment Annu Rev Cell Dev Biol 17 677-699

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CrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen LQ Lin IW Qu XQ Sosso D McFarlane HE Londontildeo A Samuels AL and Frommer WB (2015) A cascade ofsequentially expressed sucrose transporters in the seed coat and endosperm provides nutrition for the Arabidopsis embryo PlantCell 27 607-619

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Cheng WH Taliercio EW and Chourey PS (1996) The miniaturel seed locus of maize encodes a cell wall invertase requiredfor nomal development of endosperm and maternal cells in the pedicel Plant Cell 8 971-983

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Cleacutement C Chavant L Burrus M and Audran JC (1994) Anther starch variations in Lilium during pollen development SexPlant Reprod 7 347-356

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Datta R Chamusco KC and Chourey PS (2002) Starch biosynthesis during pollen maturation is associated with alteredpatterns of gene expression in maize Plant Physiol 130 1645-1656

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Davies C and Robinson SP (1996) Cloning of two putative vacuolar invertase cDNAs and their expression in grapevine tissuesPlant Physiol 111 275-283

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Engelke T Hirsche J and Roitsch T (2010) Anther-specific carbohydrate supply and restoration of metabolically engineeredmale sterility J Exp Bot 61 2693-2706

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Feng X L Ni W M Elge S Mueller-Roeber B Xu Z Hand Xue H W (2006) Auxin flow in anther filaments is critical for pollengrain development through regulating pollen mitosis Plant Mol Biol 61 215-226

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Hamann T Bennett M Mansfield J and Somerville C (2009) Identification of cell-wall stress as a hexose-dependent andosmosensitive regulator of plant responses Plant J 57 1015-1026

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Haughn G and Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis Trends Plant Sci 10 472-477Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Hellemans J Mortier G De Paepe A Speleman F and Vandesompele J (2007) qBase relative quantification framework andsoftware for management and automated analysis of real-time quantitative PCR data Genome Biol 8 R19

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Hirose T Takano M and Terao T (2002) Cell wall invertase in developing rice caryopsis molecular cloning of OsCIN1 andanalysis of its expression in relation to its role in grain filling Plant Cell Physiol 43 452-459

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Ishiguro S Kawai-Oda A Ueda K Nishida I and Okada K (2001) The DEFECTIVE IN ANTHER DEHISCENCE1 gene encodes anovel phospholipase A1 catalyzing the initial step of jasmonic acid biosynthesis which synchronizes pollen maturation antherdehiscence and flower opening in Arabidopsis Plant Cell 13 2191-2209

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Ji XM Dong B Shiran B Talbot MT Edlington JE Hughes T White RG Gubler F and Dolferus R (2011) Control ofabscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals PlantPhysiol 156 647-662

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Jin Y Ni DA and Ruan YL (2009) Posttranslational elevation of cell wall invertase activity by silencing its inhibitor in tomatodelays leaf senescence and increases seed weight and fruit hexose level Plant Cell 21 2072-2089

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Jinks RL Willoughby I and Baker C (2006) Direct seeding of ash (Fraxinus excelsior L) and sycamore (Acer pseudoplatanusL) the effects of sowing date pre-emergent herbicides cultivation and protection on seedling emergence and survival ForestEcol Manag 237 373-386

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LeClere S Schmelz EA and Chourey PS (2010) Sugar levels regulate tryptophan-dependent auxin biosynthesis in developingmaize kernels Plant Physiol 153 306-318

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Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906

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Guan XY Lee J J Pang MX Shi X L Stelly D M and Chen Z J (2011) Activation of Arabidopsis seed hair development bycotton fiber-related genes PLoS ONE 6 e213101

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Hamann T Bennett M Mansfield J and Somerville C (2009) Identification of cell-wall stress as a hexose-dependent andosmosensitive regulator of plant responses Plant J 57 1015-1026

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Haughn G and Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis Trends Plant Sci 10 472-477Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Hellemans J Mortier G De Paepe A Speleman F and Vandesompele J (2007) qBase relative quantification framework andsoftware for management and automated analysis of real-time quantitative PCR data Genome Biol 8 R19

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Heslop-Harrison J and Heslop-Harrison Y (1970) Evaluation of pollen viability by enzymatically induced fluorescenceIntracellular hydrolysisof fluorescein diacetate Stain Technol 45115-120

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Hirose T Takano M and Terao T (2002) Cell wall invertase in developing rice caryopsis molecular cloning of OsCIN1 andanalysis of its expression in relation to its role in grain filling Plant Cell Physiol 43 452-459

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ishiguro S Kawai-Oda A Ueda K Nishida I and Okada K (2001) The DEFECTIVE IN ANTHER DEHISCENCE1 gene encodes anovel phospholipase A1 catalyzing the initial step of jasmonic acid biosynthesis which synchronizes pollen maturation antherdehiscence and flower opening in Arabidopsis Plant Cell 13 2191-2209

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Ji XM Dong B Shiran B Talbot MT Edlington JE Hughes T White RG Gubler F and Dolferus R (2011) Control ofabscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals PlantPhysiol 156 647-662

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Jin Y Ni DA and Ruan YL (2009) Posttranslational elevation of cell wall invertase activity by silencing its inhibitor in tomatodelays leaf senescence and increases seed weight and fruit hexose level Plant Cell 21 2072-2089

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Jinks RL Willoughby I and Baker C (2006) Direct seeding of ash (Fraxinus excelsior L) and sycamore (Acer pseudoplatanusL) the effects of sowing date pre-emergent herbicides cultivation and protection on seedling emergence and survival ForestEcol Manag 237 373-386

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kakani VG Prasad PVV Craufurd PQ and Wheeler TR (2002) Response of in vitro pollen germination and pollen tubegrowth of groundnut (Arachis hypogaea L) genotypes to temperature Plant Cell Environ 25 1651-1661

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Keijzer CJ (1987) The cytology of anther dehiscence and pollen dispersal I The opening mechanism of longitudinally dehiscinganthers New Phytol 105 487-498

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Koch K (2004) Sucrose metabolism regulatory mechanisms and pivotal roles in sugar sensing and plant development CurrOpin Plant Biol 7 235-246

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Koonjul PK Minhas JS Nunes C Sheoran IS and Saini HS (2005) Selective transcriptional down-regulation of antherinvertases precedes the failure of pollen development in water-stressed wheat J Exp Bot 56179-190

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

LeClere S Schmelz EA and Chourey PS (2010) Sugar levels regulate tryptophan-dependent auxin biosynthesis in developingmaize kernels Plant Physiol 153 306-318

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906

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Li Z Palmer WM Martin AP Wang R Rainsford F Jin Y Patrick JW Yang Y and Ruan YL (2012) High invertase activityin tomato reproductive organs correlates with enhanced sucrose import into and heat tolerance of young fruit J Exp Bot 631155-1166

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Locascio A Roig-Villanova I Bernardi Jand Varotto S (2014) Current perspectives on the hormonal control of seeddevelopment in Arabidopsis and maize a focus on auxin Front Plant Sci 5 412

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Maddison AL Hedley PE Meyer RC Aziz N Davidson D and Machray GC (1999) Expression of tandem invertase genesassociated with sexual and vegetative growth cycles in potato Plant Mol Biol 41 741-751

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Marmey P Jalloul A Alhamdia M Assigbetse K Cacas JL Voloudakis AE Champion A Clerivet A Montillet JL andNicole M (2007) The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutumto Xanthomonas campestris pv malvacearum Plant Physiol Bioch 45 596-606

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Martin ML Lechner L Zabaleta EJ and Salerno GL (2013) A mitochondrial alkalineneutral invertase isoform (AN-InvC)functions in developmental energy-demanding processes in Arabidopsis Planta 237 813-822

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Millaacuten-Cantildeongo C Orona-Tamayo D and Heil M (2014) Phloem sugar flux and jasmonic acid-responsive cell wall invertasecontrol extrafloral nectar secretion in Ricinus communis J Chem Ecol 40 760-769

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Min L Li Y Hu Q Zhu L Gao W Wu Y Ding Y Liu S Yang X and Zhang X (2014) Sugar and auxin signaling pathwaysrespond to high-temperature stress during anther development as revealed by transcript profiling analysis in cotton PlantPhysiol 164 1293-1308

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Nashilevitz S Melamed-Bessudo C Aharoni A Kossmann J Wolf S and Levy AA (2009) The legwd mutant uncovers the roleof starch phosphorylation in pollen development and germination in tomato Plant J 57 1-13

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Nuccio ML Wu J Mowers R Zhou HP Meghji M Primavesi LF Paul MJ Chen X Gao Y Haque E Basu SSLagrimini LM (2015) Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and droughtconditions Nat Biotechnol 33 862-869

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O Hara LE Paul MJ and Wingler A (2013) How do sugars regulate plant growth and development New insight into the roleof trehalose-6-phosphate Mol Plant 6 261-274

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Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330

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Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328

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Marmey P Jalloul A Alhamdia M Assigbetse K Cacas JL Voloudakis AE Champion A Clerivet A Montillet JL andNicole M (2007) The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutumto Xanthomonas campestris pv malvacearum Plant Physiol Bioch 45 596-606

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Martin ML Lechner L Zabaleta EJ and Salerno GL (2013) A mitochondrial alkalineneutral invertase isoform (AN-InvC)functions in developmental energy-demanding processes in Arabidopsis Planta 237 813-822

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Nashilevitz S Melamed-Bessudo C Aharoni A Kossmann J Wolf S and Levy AA (2009) The legwd mutant uncovers the roleof starch phosphorylation in pollen development and germination in tomato Plant J 57 1-13

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Nuccio ML Wu J Mowers R Zhou HP Meghji M Primavesi LF Paul MJ Chen X Gao Y Haque E Basu SSLagrimini LM (2015) Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and droughtconditions Nat Biotechnol 33 862-869

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

O Hara LE Paul MJ and Wingler A (2013) How do sugars regulate plant growth and development New insight into the roleof trehalose-6-phosphate Mol Plant 6 261-274

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328

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Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554

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Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK

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Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

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Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

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Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

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Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

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Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

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Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

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httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Page 48: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

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Haughn G and Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis Trends Plant Sci 10 472-477Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Hellemans J Mortier G De Paepe A Speleman F and Vandesompele J (2007) qBase relative quantification framework andsoftware for management and automated analysis of real-time quantitative PCR data Genome Biol 8 R19

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Heslop-Harrison J and Heslop-Harrison Y (1970) Evaluation of pollen viability by enzymatically induced fluorescenceIntracellular hydrolysisof fluorescein diacetate Stain Technol 45115-120

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Hirose T Takano M and Terao T (2002) Cell wall invertase in developing rice caryopsis molecular cloning of OsCIN1 andanalysis of its expression in relation to its role in grain filling Plant Cell Physiol 43 452-459

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Ishiguro S Kawai-Oda A Ueda K Nishida I and Okada K (2001) The DEFECTIVE IN ANTHER DEHISCENCE1 gene encodes anovel phospholipase A1 catalyzing the initial step of jasmonic acid biosynthesis which synchronizes pollen maturation antherdehiscence and flower opening in Arabidopsis Plant Cell 13 2191-2209

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Ji XM Dong B Shiran B Talbot MT Edlington JE Hughes T White RG Gubler F and Dolferus R (2011) Control ofabscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals PlantPhysiol 156 647-662

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Jin Y Ni DA and Ruan YL (2009) Posttranslational elevation of cell wall invertase activity by silencing its inhibitor in tomatodelays leaf senescence and increases seed weight and fruit hexose level Plant Cell 21 2072-2089

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Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906

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Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Page 49: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

Haughn G and Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis Trends Plant Sci 10 472-477Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Hellemans J Mortier G De Paepe A Speleman F and Vandesompele J (2007) qBase relative quantification framework andsoftware for management and automated analysis of real-time quantitative PCR data Genome Biol 8 R19

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heslop-Harrison J and Heslop-Harrison Y (1970) Evaluation of pollen viability by enzymatically induced fluorescenceIntracellular hydrolysisof fluorescein diacetate Stain Technol 45115-120

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Hirose T Takano M and Terao T (2002) Cell wall invertase in developing rice caryopsis molecular cloning of OsCIN1 andanalysis of its expression in relation to its role in grain filling Plant Cell Physiol 43 452-459

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ishiguro S Kawai-Oda A Ueda K Nishida I and Okada K (2001) The DEFECTIVE IN ANTHER DEHISCENCE1 gene encodes anovel phospholipase A1 catalyzing the initial step of jasmonic acid biosynthesis which synchronizes pollen maturation antherdehiscence and flower opening in Arabidopsis Plant Cell 13 2191-2209

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ji XM Dong B Shiran B Talbot MT Edlington JE Hughes T White RG Gubler F and Dolferus R (2011) Control ofabscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals PlantPhysiol 156 647-662

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Jin Y Ni DA and Ruan YL (2009) Posttranslational elevation of cell wall invertase activity by silencing its inhibitor in tomatodelays leaf senescence and increases seed weight and fruit hexose level Plant Cell 21 2072-2089

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Jinks RL Willoughby I and Baker C (2006) Direct seeding of ash (Fraxinus excelsior L) and sycamore (Acer pseudoplatanusL) the effects of sowing date pre-emergent herbicides cultivation and protection on seedling emergence and survival ForestEcol Manag 237 373-386

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kakani VG Prasad PVV Craufurd PQ and Wheeler TR (2002) Response of in vitro pollen germination and pollen tubegrowth of groundnut (Arachis hypogaea L) genotypes to temperature Plant Cell Environ 25 1651-1661

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Keijzer CJ (1987) The cytology of anther dehiscence and pollen dispersal I The opening mechanism of longitudinally dehiscinganthers New Phytol 105 487-498

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Koch K (2004) Sucrose metabolism regulatory mechanisms and pivotal roles in sugar sensing and plant development CurrOpin Plant Biol 7 235-246

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Koonjul PK Minhas JS Nunes C Sheoran IS and Saini HS (2005) Selective transcriptional down-regulation of antherinvertases precedes the failure of pollen development in water-stressed wheat J Exp Bot 56179-190

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

LeClere S Schmelz EA and Chourey PS (2010) Sugar levels regulate tryptophan-dependent auxin biosynthesis in developingmaize kernels Plant Physiol 153 306-318

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li Z Palmer WM Martin AP Wang R Rainsford F Jin Y Patrick JW Yang Y and Ruan YL (2012) High invertase activityin tomato reproductive organs correlates with enhanced sucrose import into and heat tolerance of young fruit J Exp Bot 631155-1166

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Locascio A Roig-Villanova I Bernardi Jand Varotto S (2014) Current perspectives on the hormonal control of seeddevelopment in Arabidopsis and maize a focus on auxin Front Plant Sci 5 412

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lunn JE Delorge I Figueroa CM Van Dijck P Stitt M (2014) Trehalose metabolism in plants Plant J 79544-567Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maddison AL Hedley PE Meyer RC Aziz N Davidson D and Machray GC (1999) Expression of tandem invertase genesassociated with sexual and vegetative growth cycles in potato Plant Mol Biol 41 741-751

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Marmey P Jalloul A Alhamdia M Assigbetse K Cacas JL Voloudakis AE Champion A Clerivet A Montillet JL andNicole M (2007) The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutumto Xanthomonas campestris pv malvacearum Plant Physiol Bioch 45 596-606

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Martin ML Lechner L Zabaleta EJ and Salerno GL (2013) A mitochondrial alkalineneutral invertase isoform (AN-InvC)functions in developmental energy-demanding processes in Arabidopsis Planta 237 813-822

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Millaacuten-Cantildeongo C Orona-Tamayo D and Heil M (2014) Phloem sugar flux and jasmonic acid-responsive cell wall invertasecontrol extrafloral nectar secretion in Ricinus communis J Chem Ecol 40 760-769

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Min L Li Y Hu Q Zhu L Gao W Wu Y Ding Y Liu S Yang X and Zhang X (2014) Sugar and auxin signaling pathwaysrespond to high-temperature stress during anther development as revealed by transcript profiling analysis in cotton PlantPhysiol 164 1293-1308

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mishra BS Singh M Aggrawal P and Laxmi A (2009) Glucose and auxin signaling interaction in controlling Arabidopsisthaliana seedlings root growth and development Plos One 4 e4502

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nashilevitz S Melamed-Bessudo C Aharoni A Kossmann J Wolf S and Levy AA (2009) The legwd mutant uncovers the roleof starch phosphorylation in pollen development and germination in tomato Plant J 57 1-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nuccio ML Wu J Mowers R Zhou HP Meghji M Primavesi LF Paul MJ Chen X Gao Y Haque E Basu SSLagrimini LM (2015) Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and droughtconditions Nat Biotechnol 33 862-869

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

O Hara LE Paul MJ and Wingler A (2013) How do sugars regulate plant growth and development New insight into the roleof trehalose-6-phosphate Mol Plant 6 261-274

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Page 50: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li Z Palmer WM Martin AP Wang R Rainsford F Jin Y Patrick JW Yang Y and Ruan YL (2012) High invertase activityin tomato reproductive organs correlates with enhanced sucrose import into and heat tolerance of young fruit J Exp Bot 631155-1166

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Locascio A Roig-Villanova I Bernardi Jand Varotto S (2014) Current perspectives on the hormonal control of seeddevelopment in Arabidopsis and maize a focus on auxin Front Plant Sci 5 412

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lunn JE Delorge I Figueroa CM Van Dijck P Stitt M (2014) Trehalose metabolism in plants Plant J 79544-567Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maddison AL Hedley PE Meyer RC Aziz N Davidson D and Machray GC (1999) Expression of tandem invertase genesassociated with sexual and vegetative growth cycles in potato Plant Mol Biol 41 741-751

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Marmey P Jalloul A Alhamdia M Assigbetse K Cacas JL Voloudakis AE Champion A Clerivet A Montillet JL andNicole M (2007) The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutumto Xanthomonas campestris pv malvacearum Plant Physiol Bioch 45 596-606

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Martin ML Lechner L Zabaleta EJ and Salerno GL (2013) A mitochondrial alkalineneutral invertase isoform (AN-InvC)functions in developmental energy-demanding processes in Arabidopsis Planta 237 813-822

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Millaacuten-Cantildeongo C Orona-Tamayo D and Heil M (2014) Phloem sugar flux and jasmonic acid-responsive cell wall invertasecontrol extrafloral nectar secretion in Ricinus communis J Chem Ecol 40 760-769

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Min L Li Y Hu Q Zhu L Gao W Wu Y Ding Y Liu S Yang X and Zhang X (2014) Sugar and auxin signaling pathwaysrespond to high-temperature stress during anther development as revealed by transcript profiling analysis in cotton PlantPhysiol 164 1293-1308

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mishra BS Singh M Aggrawal P and Laxmi A (2009) Glucose and auxin signaling interaction in controlling Arabidopsisthaliana seedlings root growth and development Plos One 4 e4502

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nashilevitz S Melamed-Bessudo C Aharoni A Kossmann J Wolf S and Levy AA (2009) The legwd mutant uncovers the roleof starch phosphorylation in pollen development and germination in tomato Plant J 57 1-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nuccio ML Wu J Mowers R Zhou HP Meghji M Primavesi LF Paul MJ Chen X Gao Y Haque E Basu SSLagrimini LM (2015) Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and droughtconditions Nat Biotechnol 33 862-869

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

O Hara LE Paul MJ and Wingler A (2013) How do sugars regulate plant growth and development New insight into the roleof trehalose-6-phosphate Mol Plant 6 261-274

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by

Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Page 51: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385

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Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964

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Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Page 52: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved

Page 53: Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016  · 40 rely on combined competence in male and female fertilities. Sucrose (Suc) 41 ... 60 In flowering

required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved