Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016 · 40 rely on...
Transcript of Critical roles of vacuolar invertase in floral organ ...€¦ · 11/03/2016 · 40 rely on...
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Critical roles of vacuolar invertase in floral organ development and male and 1
female fertilities are revealed through characterization of GhVIN1-RNAi cotton 2
plants 3
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Lu Wang and Yong-Ling Ruan 7
8 School of Environmental amp Life Sciences and 9 Australian-China Research Centre for Crop Improvement 10 The University of Newcastle 11 Callaghan NSW 2308 12 Australia 13 14 Current address School of Plant Science University of Tasmania Hobart TAS 15 7001 Australia 16 17 Correspondance 18 19 Yong-Ling Ruan 20 Fax 61 2 49216572 21 E-mail Yong-LingRuannewcastleeduau 22 23 24 Author contribution 25 Y-LR conceived the project and supervised the research Y-LR and 26 LW designed the research plans LW performed the research LW and Y-LR 27 analysed the data LW and Y-LR wrote the article 28
29
Funding 30
This work was supported by Chinese National Science Foundation (Grant 30425043) 31
and Australian Research Council (DP110104931 to Y-L Ruan) 32
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Plant Physiology Preview Published on March 11 2016 as DOI101104pp1600197
Copyright 2016 by the American Society of Plant Biologists
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ABSTRACT 38
Seed number and quality are key traits determining plant fitness and crop yield and 39
rely on combined competence in male and female fertilities Sucrose (Suc) 40
metabolism is central to reproductive success It remains elusive though how 41
individual Suc metabolic enzymes may regulate the complex reproductive processes 42
Here by silencing vacuolar invertase (VIN) genes in cotton reproductive organs we 43
revealed diverse roles that VIN play in multiple reproductive processes A set of 44
phenotypic and genetic studies showed significant reductions of viable seeds in the 45
GhVIN1-RNAi plants attributed to pollination failure and impaired male and female 46
fertilities The former was largely owing to the spatial mismatch between style and 47
stamen and delayed pollen release from the anthers whereas male defects came from 48
poor pollen viability The transgenic stamen exhibited altered expression of genes 49
responsible for starch metabolism and auxin and jasmonic acid signaling Further 50
analyses identified the reduction of GhVINs expression in the seed coat as the major 51
cause for the reduced female fertility which appeared to disrupt the expression of 52
some key genes involved in trehalose and auxin metabolism and signaling leading to 53
programmed cell death or growth repression in the filial tissues Together the data 54
provide an unprecedented example that VIN is required for synchronizing style and 55
stamen development and the formation of male and female fertility for seed 56
development in a crop species cotton 57
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INTRODUCTION 59
In flowering plants sexual reproduction involves (i) the gametophytic development 60
producing sperms in the pollens within the anthers and eggs in the ovules embedded 61
within the ovaries (ii) accomplishment of specific interactions between mature 62
pollens and the receptive stigma followed by pollen tube elongation down to the 63
ovules (iii) gamete fusion known as double fertilization resulting in a diploid 64
embryo nucleus and a triploid endosperm nucleus and (iv) the coordinated 65
development among seed coat embryo and endosperm to generate a viable seed 66
Accompanied with the distinctive cellular and developmental changes during these 67
processes complex molecular and biochemical pathways have evolved to regulate 68
each step to ensure the success of seed production 69
Sugars are important energy source building blocks osmotic solutes and signaling 70
molecules (Ruan 2014) As the principal product of photosynthesis sucrose (Suc) is 71
the primary carbon translocated from source leaves to non-photosynthetic sinks 72
including reproductive organs Prior to its use for metabolism and biosynthesis Suc 73
needs to be degraded into hexoses by either Suc synthase (Sus EC 24113) or 74
invertase (INV EC 32126) Sus cleaves Suc in the presence of UDP into 75
UDP-glucose and fructose (Fru) and is largely involved in cell wall and starch 76
biosynthesis in sink organs (Chourey et al 1998 Brill et al 2011) and maintaining 77
sink strength (Pozueta-Romero et al 1999 Xu et al 2012) especially in crop species 78
(Ruan 2014) INV on the other hand hydrolyzes Suc into Fru and glucose (Glc) and 79
plays essential roles in plant development and stress responses (Koch 2004 Ruan 80
2014) Based on their subcellular location INV can be classified as cell wall invertase 81
(CWIN) cytoplasmic invertase (CIN) and vacuolar invertase (VIN) 82
The involvement of INVs in pollen development has been observed in a wide range 83
of species (Maddison et al 1999 Goetz et al 2001 Proels et al 2006 Castro and 84
Cleacutement 2007 Engelke et al 2010 Pressman et al 2012) especially under stress 85
conditions such as drought (Koonjul et al 2005) and cold (Oliver et al 2005) 86
Positive correlations between INV activities and seed and fruit development have also 87
been reported in maize (eg Cheng et al 1996 Boyer and McLaughlin 2007) rice 88
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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89
al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90
tomato (Zanor et al 2009 Jin et al 2009) 91
Apart from their major roles in primary metabolism INVs are also intimately 92
involved in sugar signaling For example the VIN-derived hexose signaling likely 93
plays an indispensable role in cotton fiber (seed trichome) initiation through 94
regulating the expression of some MYB transcription factors and auxin signaling 95
genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96
signaling pathways have been implicated during the development of wheat pollen 97
(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98
al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99
2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100
Millaacuten-Cantildeongo et al 2014) 101
Despite the progress outlined above there is a lack of understanding on whether INVs 102
modulate both male and female fertilities and if so how the regulation may be 103
achieved at the developmental cellular and molecular levels Filling this major 104
knowledge gap is essential for better understanding the regulation of plant 105
reproductive development and for designing better approaches to improve crop 106
reproductive success for seed and fruit production under climate change (Ruan 2014) 107
Here we provided a comprehensive analysis on the roles of VIN in reproductive 108
development using VIN-suppressed cotton as a model The data obtained revealed that 109
VIN is required for both male and female fertilities and its reduced expression in seed 110
coat led to programmed cell death or growth repression in the filial tissues 111
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RESULTS 114
Silencing GhVIN1 resulted in high proportion of unviable seeds 115
In our previous study (Wang et al 2014) a RNA interference construct against a 116
major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117
RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118
development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119
significant reduction of VIN activity in cotton seeds and consequently a fiberless 120
seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121
seed epidermis we also observed a significant reduction of seeds in the 122
GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123
Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124
buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125
number of bolls that set and viable seeds per boll were reduced in all the transgenic 126
lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127
The ovule number per boll however was not significantly affected in the transgenic 128
plants (Figure S2) excluding the possibility of reduced ovule development as a 129
potential cause for the reduced seed production The transgenic lines examined were 130
homozygous for the transgenes based on PCR-detection of the presence of RDL 131
promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132
A close phenotypic analysis identified two types of unviable seeds from the 133
transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134
seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135
after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136
maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137
latter were expanded to some extent but were hollow or only partially filled inside the 138
seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139
(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140
to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141
average of 50 78 36 35 34 and 49 of total ovules failed to expand 142
(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143
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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144
becoming under-developed seeds in the corresponding lines (Figure 2M) The 145
presence of the higher proportion of these two types of unviable seeds led to 146
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significant reduction of viable seeds across the transgenic lines examined (Figure 147
2M) 148
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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- 25 -
of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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- 27 -
caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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- 28 -
failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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ABSTRACT 38
Seed number and quality are key traits determining plant fitness and crop yield and 39
rely on combined competence in male and female fertilities Sucrose (Suc) 40
metabolism is central to reproductive success It remains elusive though how 41
individual Suc metabolic enzymes may regulate the complex reproductive processes 42
Here by silencing vacuolar invertase (VIN) genes in cotton reproductive organs we 43
revealed diverse roles that VIN play in multiple reproductive processes A set of 44
phenotypic and genetic studies showed significant reductions of viable seeds in the 45
GhVIN1-RNAi plants attributed to pollination failure and impaired male and female 46
fertilities The former was largely owing to the spatial mismatch between style and 47
stamen and delayed pollen release from the anthers whereas male defects came from 48
poor pollen viability The transgenic stamen exhibited altered expression of genes 49
responsible for starch metabolism and auxin and jasmonic acid signaling Further 50
analyses identified the reduction of GhVINs expression in the seed coat as the major 51
cause for the reduced female fertility which appeared to disrupt the expression of 52
some key genes involved in trehalose and auxin metabolism and signaling leading to 53
programmed cell death or growth repression in the filial tissues Together the data 54
provide an unprecedented example that VIN is required for synchronizing style and 55
stamen development and the formation of male and female fertility for seed 56
development in a crop species cotton 57
58
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INTRODUCTION 59
In flowering plants sexual reproduction involves (i) the gametophytic development 60
producing sperms in the pollens within the anthers and eggs in the ovules embedded 61
within the ovaries (ii) accomplishment of specific interactions between mature 62
pollens and the receptive stigma followed by pollen tube elongation down to the 63
ovules (iii) gamete fusion known as double fertilization resulting in a diploid 64
embryo nucleus and a triploid endosperm nucleus and (iv) the coordinated 65
development among seed coat embryo and endosperm to generate a viable seed 66
Accompanied with the distinctive cellular and developmental changes during these 67
processes complex molecular and biochemical pathways have evolved to regulate 68
each step to ensure the success of seed production 69
Sugars are important energy source building blocks osmotic solutes and signaling 70
molecules (Ruan 2014) As the principal product of photosynthesis sucrose (Suc) is 71
the primary carbon translocated from source leaves to non-photosynthetic sinks 72
including reproductive organs Prior to its use for metabolism and biosynthesis Suc 73
needs to be degraded into hexoses by either Suc synthase (Sus EC 24113) or 74
invertase (INV EC 32126) Sus cleaves Suc in the presence of UDP into 75
UDP-glucose and fructose (Fru) and is largely involved in cell wall and starch 76
biosynthesis in sink organs (Chourey et al 1998 Brill et al 2011) and maintaining 77
sink strength (Pozueta-Romero et al 1999 Xu et al 2012) especially in crop species 78
(Ruan 2014) INV on the other hand hydrolyzes Suc into Fru and glucose (Glc) and 79
plays essential roles in plant development and stress responses (Koch 2004 Ruan 80
2014) Based on their subcellular location INV can be classified as cell wall invertase 81
(CWIN) cytoplasmic invertase (CIN) and vacuolar invertase (VIN) 82
The involvement of INVs in pollen development has been observed in a wide range 83
of species (Maddison et al 1999 Goetz et al 2001 Proels et al 2006 Castro and 84
Cleacutement 2007 Engelke et al 2010 Pressman et al 2012) especially under stress 85
conditions such as drought (Koonjul et al 2005) and cold (Oliver et al 2005) 86
Positive correlations between INV activities and seed and fruit development have also 87
been reported in maize (eg Cheng et al 1996 Boyer and McLaughlin 2007) rice 88
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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89
al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90
tomato (Zanor et al 2009 Jin et al 2009) 91
Apart from their major roles in primary metabolism INVs are also intimately 92
involved in sugar signaling For example the VIN-derived hexose signaling likely 93
plays an indispensable role in cotton fiber (seed trichome) initiation through 94
regulating the expression of some MYB transcription factors and auxin signaling 95
genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96
signaling pathways have been implicated during the development of wheat pollen 97
(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98
al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99
2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100
Millaacuten-Cantildeongo et al 2014) 101
Despite the progress outlined above there is a lack of understanding on whether INVs 102
modulate both male and female fertilities and if so how the regulation may be 103
achieved at the developmental cellular and molecular levels Filling this major 104
knowledge gap is essential for better understanding the regulation of plant 105
reproductive development and for designing better approaches to improve crop 106
reproductive success for seed and fruit production under climate change (Ruan 2014) 107
Here we provided a comprehensive analysis on the roles of VIN in reproductive 108
development using VIN-suppressed cotton as a model The data obtained revealed that 109
VIN is required for both male and female fertilities and its reduced expression in seed 110
coat led to programmed cell death or growth repression in the filial tissues 111
112
113
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RESULTS 114
Silencing GhVIN1 resulted in high proportion of unviable seeds 115
In our previous study (Wang et al 2014) a RNA interference construct against a 116
major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117
RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118
development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119
significant reduction of VIN activity in cotton seeds and consequently a fiberless 120
seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121
seed epidermis we also observed a significant reduction of seeds in the 122
GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123
Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124
buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125
number of bolls that set and viable seeds per boll were reduced in all the transgenic 126
lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127
The ovule number per boll however was not significantly affected in the transgenic 128
plants (Figure S2) excluding the possibility of reduced ovule development as a 129
potential cause for the reduced seed production The transgenic lines examined were 130
homozygous for the transgenes based on PCR-detection of the presence of RDL 131
promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132
A close phenotypic analysis identified two types of unviable seeds from the 133
transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134
seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135
after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136
maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137
latter were expanded to some extent but were hollow or only partially filled inside the 138
seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139
(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140
to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141
average of 50 78 36 35 34 and 49 of total ovules failed to expand 142
(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143
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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144
becoming under-developed seeds in the corresponding lines (Figure 2M) The 145
presence of the higher proportion of these two types of unviable seeds led to 146
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significant reduction of viable seeds across the transgenic lines examined (Figure 147
2M) 148
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
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INTRODUCTION 59
In flowering plants sexual reproduction involves (i) the gametophytic development 60
producing sperms in the pollens within the anthers and eggs in the ovules embedded 61
within the ovaries (ii) accomplishment of specific interactions between mature 62
pollens and the receptive stigma followed by pollen tube elongation down to the 63
ovules (iii) gamete fusion known as double fertilization resulting in a diploid 64
embryo nucleus and a triploid endosperm nucleus and (iv) the coordinated 65
development among seed coat embryo and endosperm to generate a viable seed 66
Accompanied with the distinctive cellular and developmental changes during these 67
processes complex molecular and biochemical pathways have evolved to regulate 68
each step to ensure the success of seed production 69
Sugars are important energy source building blocks osmotic solutes and signaling 70
molecules (Ruan 2014) As the principal product of photosynthesis sucrose (Suc) is 71
the primary carbon translocated from source leaves to non-photosynthetic sinks 72
including reproductive organs Prior to its use for metabolism and biosynthesis Suc 73
needs to be degraded into hexoses by either Suc synthase (Sus EC 24113) or 74
invertase (INV EC 32126) Sus cleaves Suc in the presence of UDP into 75
UDP-glucose and fructose (Fru) and is largely involved in cell wall and starch 76
biosynthesis in sink organs (Chourey et al 1998 Brill et al 2011) and maintaining 77
sink strength (Pozueta-Romero et al 1999 Xu et al 2012) especially in crop species 78
(Ruan 2014) INV on the other hand hydrolyzes Suc into Fru and glucose (Glc) and 79
plays essential roles in plant development and stress responses (Koch 2004 Ruan 80
2014) Based on their subcellular location INV can be classified as cell wall invertase 81
(CWIN) cytoplasmic invertase (CIN) and vacuolar invertase (VIN) 82
The involvement of INVs in pollen development has been observed in a wide range 83
of species (Maddison et al 1999 Goetz et al 2001 Proels et al 2006 Castro and 84
Cleacutement 2007 Engelke et al 2010 Pressman et al 2012) especially under stress 85
conditions such as drought (Koonjul et al 2005) and cold (Oliver et al 2005) 86
Positive correlations between INV activities and seed and fruit development have also 87
been reported in maize (eg Cheng et al 1996 Boyer and McLaughlin 2007) rice 88
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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89
al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90
tomato (Zanor et al 2009 Jin et al 2009) 91
Apart from their major roles in primary metabolism INVs are also intimately 92
involved in sugar signaling For example the VIN-derived hexose signaling likely 93
plays an indispensable role in cotton fiber (seed trichome) initiation through 94
regulating the expression of some MYB transcription factors and auxin signaling 95
genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96
signaling pathways have been implicated during the development of wheat pollen 97
(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98
al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99
2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100
Millaacuten-Cantildeongo et al 2014) 101
Despite the progress outlined above there is a lack of understanding on whether INVs 102
modulate both male and female fertilities and if so how the regulation may be 103
achieved at the developmental cellular and molecular levels Filling this major 104
knowledge gap is essential for better understanding the regulation of plant 105
reproductive development and for designing better approaches to improve crop 106
reproductive success for seed and fruit production under climate change (Ruan 2014) 107
Here we provided a comprehensive analysis on the roles of VIN in reproductive 108
development using VIN-suppressed cotton as a model The data obtained revealed that 109
VIN is required for both male and female fertilities and its reduced expression in seed 110
coat led to programmed cell death or growth repression in the filial tissues 111
112
113
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RESULTS 114
Silencing GhVIN1 resulted in high proportion of unviable seeds 115
In our previous study (Wang et al 2014) a RNA interference construct against a 116
major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117
RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118
development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119
significant reduction of VIN activity in cotton seeds and consequently a fiberless 120
seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121
seed epidermis we also observed a significant reduction of seeds in the 122
GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123
Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124
buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125
number of bolls that set and viable seeds per boll were reduced in all the transgenic 126
lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127
The ovule number per boll however was not significantly affected in the transgenic 128
plants (Figure S2) excluding the possibility of reduced ovule development as a 129
potential cause for the reduced seed production The transgenic lines examined were 130
homozygous for the transgenes based on PCR-detection of the presence of RDL 131
promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132
A close phenotypic analysis identified two types of unviable seeds from the 133
transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134
seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135
after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136
maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137
latter were expanded to some extent but were hollow or only partially filled inside the 138
seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139
(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140
to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141
average of 50 78 36 35 34 and 49 of total ovules failed to expand 142
(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143
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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144
becoming under-developed seeds in the corresponding lines (Figure 2M) The 145
presence of the higher proportion of these two types of unviable seeds led to 146
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significant reduction of viable seeds across the transgenic lines examined (Figure 147
2M) 148
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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(Hirose et al 2002 Wang et al 2008) barley (Weschke et al 2003 Serrnivasulu et 89
al 2004) broad bean (Weber et al 1996) grape (Davies and Robinson 1996) and 90
tomato (Zanor et al 2009 Jin et al 2009) 91
Apart from their major roles in primary metabolism INVs are also intimately 92
involved in sugar signaling For example the VIN-derived hexose signaling likely 93
plays an indispensable role in cotton fiber (seed trichome) initiation through 94
regulating the expression of some MYB transcription factors and auxin signaling 95
genes (Wang et al 2014) Furthermore interactions between CWINs and hormone 96
signaling pathways have been implicated during the development of wheat pollen 97
(ABA- Ji et al 2011) maize seed (cytokinins- Rijavec et al 2009 auxin- LeClere et 98
al 2010) rice grain (auxin- French et al 2014) tomato fruit (ethylene- Zanor et al 99
2009) and Arabidopsis seed extrafloral nectar secretion (jasmonic acid- 100
Millaacuten-Cantildeongo et al 2014) 101
Despite the progress outlined above there is a lack of understanding on whether INVs 102
modulate both male and female fertilities and if so how the regulation may be 103
achieved at the developmental cellular and molecular levels Filling this major 104
knowledge gap is essential for better understanding the regulation of plant 105
reproductive development and for designing better approaches to improve crop 106
reproductive success for seed and fruit production under climate change (Ruan 2014) 107
Here we provided a comprehensive analysis on the roles of VIN in reproductive 108
development using VIN-suppressed cotton as a model The data obtained revealed that 109
VIN is required for both male and female fertilities and its reduced expression in seed 110
coat led to programmed cell death or growth repression in the filial tissues 111
112
113
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RESULTS 114
Silencing GhVIN1 resulted in high proportion of unviable seeds 115
In our previous study (Wang et al 2014) a RNA interference construct against a 116
major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117
RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118
development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119
significant reduction of VIN activity in cotton seeds and consequently a fiberless 120
seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121
seed epidermis we also observed a significant reduction of seeds in the 122
GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123
Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124
buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125
number of bolls that set and viable seeds per boll were reduced in all the transgenic 126
lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127
The ovule number per boll however was not significantly affected in the transgenic 128
plants (Figure S2) excluding the possibility of reduced ovule development as a 129
potential cause for the reduced seed production The transgenic lines examined were 130
homozygous for the transgenes based on PCR-detection of the presence of RDL 131
promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132
A close phenotypic analysis identified two types of unviable seeds from the 133
transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134
seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135
after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136
maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137
latter were expanded to some extent but were hollow or only partially filled inside the 138
seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139
(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140
to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141
average of 50 78 36 35 34 and 49 of total ovules failed to expand 142
(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143
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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144
becoming under-developed seeds in the corresponding lines (Figure 2M) The 145
presence of the higher proportion of these two types of unviable seeds led to 146
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significant reduction of viable seeds across the transgenic lines examined (Figure 147
2M) 148
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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- 25 -
of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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- 27 -
caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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RESULTS 114
Silencing GhVIN1 resulted in high proportion of unviable seeds 115
In our previous study (Wang et al 2014) a RNA interference construct against a 116
major cotton vacuolar invertase gene GhVIN1 was introduced into cotton under the 117
RD22-like1 (RDL1) promoter which is active mainly in cotton fiber and seed early in 118
development (Wang et al 2004) The suppression of cotton GhVIN1 resulted in 119
significant reduction of VIN activity in cotton seeds and consequently a fiberless 120
seed phenotype (Wang et al 2014) Apart from the blockage of fiber initiation from 121
seed epidermis we also observed a significant reduction of seeds in the 122
GhVIN1-RNAi lines as compared to those of wild type (WT) plants (Figure S1 and 123
Figure 1) Detailed analyses at T3 generation revealed that while the number of flower 124
buds was reduced only in one (line 2-3-1) out of six lines examined (Figure 1A) the 125
number of bolls that set and viable seeds per boll were reduced in all the transgenic 126
lines to 60-75 and 21-56 of those in WT plants respectively (Figure 1B and C) 127
The ovule number per boll however was not significantly affected in the transgenic 128
plants (Figure S2) excluding the possibility of reduced ovule development as a 129
potential cause for the reduced seed production The transgenic lines examined were 130
homozygous for the transgenes based on PCR-detection of the presence of RDL 131
promoter-GhVIN1 fragment in all of the tested T3 and T4 progenies for each line 132
A close phenotypic analysis identified two types of unviable seeds from the 133
transgenic lines comprising of (i) un-developed seedsovules and (ii) under-developed 134
seeds (Figure 2) The former became morphologically distinguishable as early as ~5 d 135
after anthesis (DAA) and remained at the size of unfertilized ovules even by boll 136
maturity (indicated by red arrows or red dash-lines in Figure 2E F K and L) The 137
latter were expanded to some extent but were hollow or only partially filled inside the 138
seed coat and could be easily sorted out from the normal seeds at about 30 DAA 139
(yellow arrowheads or yellow dash-lines in Figure 2H I K and L) Overall compared 140
to 11 of un-developed and 3 of under-developed seeds observed in the WT an 141
average of 50 78 36 35 34 and 49 of total ovules failed to expand 142
(hence being un-developed) in line 2-3-1 15-4-2 28-2-1 28-4-2 61-1-2 and 61-9-1 143
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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144
becoming under-developed seeds in the corresponding lines (Figure 2M) The 145
presence of the higher proportion of these two types of unviable seeds led to 146
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significant reduction of viable seeds across the transgenic lines examined (Figure 147
2M) 148
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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respectively accompanied with ~7 4 17 26 23 and 32 of the ovules 144
becoming under-developed seeds in the corresponding lines (Figure 2M) The 145
presence of the higher proportion of these two types of unviable seeds led to 146
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significant reduction of viable seeds across the transgenic lines examined (Figure 147
2M) 148
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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significant reduction of viable seeds across the transgenic lines examined (Figure 147
2M) 148
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
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To explore the cellular and molecular basis of the observed seed phenotype 149
(Figures 1 and 2) we next selected three independent lines 15-4-2 28-4-1and 61-9-1 150
for detailed analyses Here 15-4-2 had an extremely large proportion of un-developed 151
seeds while the latter two lines represent those with high ratio of under-developed 152
seeds (Figure 2) The flower bud number was not significantly affected in these three 153
lines as compared to the WT (Figure 1A) 154
155
GhVIN1-RNAi plants exhibited mismatched floral structure delayed anther 156
dehiscence and low pollen viability 157
The presence of large proportion of unviable seeds in the GhVIN1-RNAi plants was 158
somehow unexpected given VIN has been typically considered to regulate cell 159
enlargement (Wang et al 2010) The finding prompted us to investigate the 160
underlying developmental basis One surprising observation was that the 161
GhVIN1-RNAi plants had evident abnormality in flower structure A large proportion 162
of the transgenic flowers displayed spatially mismatched stamen and stigma (Figure 163
3A) or their malformation or even a lack of pistil and stamen entirely (Figure S3) 164
The stigma protrusion well above the stamen was owing to the increased style lengths 165
as in line 28-4-1 and 61-9-1 or shortened filament length and anther coverage region 166
as in line 15-4-2 (Figure 3B) Moreover pollen number per flower was reduced to an 167
average of 18 60 and 84 of that in WT in line 15-4-2 61-9-1 and 28-4-1 168
respectively (Figure 3B) 169
We also observed a delayed dehiscence in a proportion of the transgenic flowers 170
(indicated by arrowheads in Figures 3A and highlighted in Figures 3D vs C and E) 171
Consistently aniline blue staining of 0-d styles revealed far fewer pollen grains 172
landed on the transgenic stigmas as compared to that in the wild type (Figure 3F) 173
Anther opening requires cellular degeneration of septum and stomium and 174
secondary cell wall thickening of endothecium and water loss from anthers (Wilson et 175
al 2011) To this end in contrast to the thickened WT anther endothecium walls that 176
emitted callose fluorescence following aniline blue staining (Figure 4 A and B) no or 177
much reduced fluorescent signals were observed in the anther walls from line 15-4-2 178
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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and 61-9-1 (Figure 4 C-F) indicating compromised wall thickening in the 179
endothecium of those anthers Histological analyses also revealed that 50 and 31 180
of the -1d anthers from lines 15-4-2 28-4-1 had un-degenerated septum whereas a 181
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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majority of the WT septum had been degraded by -1 DAA (Figure 4H vs G) Together 182
the impaired septum degeneration and endothecium wall thickening are the likely 183
cellular basis for the delayed anther dehiscence in the RNAi lines 184
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Starch accumulation in filament and anther-filament junction region serves as a 185
carbon source for generating soluble sugars prior to anthesis to draw water from 186
anther wall osmotically thereby contributing to anther dehiscence and opening 187
(Keijzer 1987 Bonner and Dickinson 1990 Stadler et al 1999) Staining with I2-KI 188
revealed that in contrast to the strong signal of starch displayed in the WT stamen the 189
transgenic filaments and especially their joint area with anthers exhibited much 190
reduced starch staining (Figure 4I to M) Noteworthy is that the least starch staining 191
was observed in line 15-4-2 (Figure 4K) which displayed the strongest phenotype of 192
anther dehiscence delay (Figure 3A and D) The reduced starch accumulation in the 193
anther-filament joint region may represent a metabolic basis for the delay of anther 194
dehiscence in the RNAi stamen 195
Pollen viability staining with FDA revealed significantly reduced viable pollens 196
in the transgenic anthers (Figures 4N and O) Moreover the transgenic lines also 197
exhibited significantly reduced germination rate (Figure 4P) and lowed pollen tube 198
elongation (Figure S4A) A certain number of pollen tubes however were able to 199
reach the base of the ovaries in the RNAi plants (Figure S4 D-E) 200
201
Genetic evidence that both male and female fertilities were impaired in the 202
GhVIN1-RNAi cotton plants 203
To test whether the reduced seed set in the transgenic plants was caused solely by 204
insufficient pollen grains landed on the stigmas we hand-pollinated RNAi and WT 205
cottons with their respective pollens To analyze the proportions of the three types of 206
seeds (normal and viable un- and under-developed) between WT and RNAi lines we 207
created a generalized linear mixed model (GLMM) with a binomial error structure 208
and logistic link function (see method for details) GLMM has been widely used in 209
genetics and evolution studies for analyzing complex biological systems without 210
ignoring the random effects or violating the statistical assumptions on normal 211
distribution and constant variances (Quinn and Keough 2002 Jinks et al 2006 212
Bolker et al 2009) 213
Hand-pollination did not affect seed set in WT indicating sufficient pollen load 214
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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under natural condition (Figure 5A) It however increased seed set in the transgenic 215
lines to some extent as compared to their respective control sets (Figure 5A) 216
Accordingly the proportion of un- and under-developed seeds was reduced by 217
hand-pollination in some transgenic lines (Figure S5 A and B) It is important to note 218
however that hand-pollination only partially restore seed set (Figure 5A) indicating 219
that pollination deficiency is not the only factor accounting for low seed production in 220
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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the GhVIN1 RNAi plants 221
We then performed reciprocal cross between WT and transgenic lines to dissect the 222
relative paternal and maternal contributions to reduced seed production in the RNAi 223
plants As shown in Figure 5B in comparison with ~88 of viable seed in the 224
self-pollinated WT plants pollination of WT stigma with pollens from RNAi line 225
reduced viable seed percentage by 20 to 50 Conversely reciprocal cross of RNAi 226
stigma with WT pollens increased viable seed percentage to some extent but not to 227
the level in WT (Figure 5B) The data show that both maternal and paternal defects 228
contribute to seed infertility in GhVIN1 RNAi plants 229
Interestingly compared to that of the WT self-pollination the proportion of 230
under-developed seed remained unaffected by pollination of the WT flower with 231
pollens from the RNAi lines (Figure S5D) Moreover comparable ratio of the 232
under-developed seed was observed between the RNAi times WT hybrids and RNAi 233
self-pollination (Figure S 5 D vs B) Hence paternal impact seems irrelevant to these 234
type of shrunken seeds In other words the under-developed seeds are mainly derived 235
from maternal defects By contrast however pollination of the WT stigma with the 236
RNAi pollens increased the proportion of the un-developed seeds as compared to that 237
of WT self-pollination while descendants from RNAi ()times WT () crosses showed 238
reduced percentage of un-developed seeds as compared to the respective 239
self-pollinated RNAi lines (Figure S5 C vs A) Thus paternal defects clearly 240
contribute to the production of un-developed seeds Additionally the proportion of 241
undeveloped seed in RNAi 15-4-2 () times WT () hybrids is much higher than that of 242
WT self-pollination but smaller than RNAi 15-4-2 self-pollination (Figure S5 C vs 243
A) suggesting an evolvement of maternal defect for the undeveloped seed 244
Seed set is dependent on assimilate import and utilization in sinks (Ruan et al 245
2012) To assess if the poor seed set may relate to reduced assimilate availability for 246
individual bolls in the GhVIN1 RNAi plants we performed thinning experiments to 247
remove most of the flower buds to allow only 4 bolls to set per plant The treatment 248
slightly increased seed set in the WT but with no significant effect on the RNAi lines 249
(Figure 5C) indicating that the seed phenotype in the transgenic plants is not due to 250
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- 14 -
compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
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compromised assimilate supply 251
252
RNAi-mediated suppression of GhVIN expression led to a significant decline in 253
VIN activity in stamen 254
To gain insights into the roles of GhVINs in anther we first examined its cellular 255
expression patterns by performing in situ hybridization in WT anthers using an RNA 256
antisense probe carrying 185 base pairs matching the C-terminals of GhVIN1 and 257
GhVIN2 mRNA sequences with 100 and 80 identities respectively Thus the 258
probe would hybridize both GhVIN1 and GhVIN2 transcripts In comparison with the 259
sense control (Figures 6 A and C) GhVINs transcripts were detected abundantly in 260
pollen grains and in anther-filament joint area (Figures 6 B and D) On the other hand 261
the RDL promoter used to driven the RNAi construct was indeed active in pollen 262
grains and in the top part of filaments connecting anthers transformed with RDL- 263
β-glucuronidase (GUS) reporter gene (Figure S6 A-B) Thus GhVIN mRNAs would 264
be targeted by the RNAi construct for degradation in the regions 265
Consistently quantitative real-time PCR (qPCR) analyses revealed that the 266
GhVIN1 transcripts were reduced by 82 25 and 55 in RNAi 15-4-2 28-4-1 and 267
61-9-1 stamen (Figure 6E) Meanwhile the GhVIN2 mRNA levels were also reduced 268
in the transgenic stamen (Figure 6E) reflecting co-silencing effect by the GhVIN1 269
RNAi construct Consequently VIN activity was significantly decreased in the 270
stamen from all three transgenic lines as compared to that in WT (Figure 6F) with its 271
degree of reduction corresponding to the level of suppression in the GhVIN1 mRNA 272
level (Figure 6E) The CWIN activity was largely unaffected in the RNAi stamen 273
except in transgenic line 15-4-2 which exhibited a reduction in activity and mRNA 274
level (Figures 6 E and F) The reduction of VIN activity was associated with a 275
decrease in CIN activity from lines 15-4-2 and 61-9-1 276
Collectively the data indicate that the inhibition of GhVINs in anther and pollen 277
(Figure 6) impaired stamen and pollen development in the RNAi cotton plants 278
(Figures 3-5) These paternal defects likely resulted in pollination and fertilization 279
failure leading to un-developed seeds (Figures 1-2) 280
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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281
GhVIN1-RNAi stamen were characterized with reduced expressions of genes for 282
starch metabolism auxin biosynthesis and jasmonic acid responses and altered 283
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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- 25 -
of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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- 27 -
caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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- 28 -
failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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expression of auxin signaling genes 284
To explore the molecular basis of the VIN-mediated regulation of stamen 285
development and anther dehiscence we examined the potential effects of reduced 286
VIN activity on the expression of genes responsible for carbohydrate allocation and 287
hormonal function in -1d stamen The transcript levels of two ADP-glucose 288
pyrophosphorylase genes (GhAGPase1 and GhAGPase2) encoding the rate-limiting 289
enzyme AGPase for starch synthesis were significantly decreased in the stamen of all 290
three transgenic lines (Figures 7A and S7) consistent with the reduced starch content 291
in the transgenic stamen (Figures 4 I -M) Besides down-regulated expression of an 292
α-amylase gene GhαAmy was also observed in line 15-4-2 and 28-4-1 as compared to 293
that in WT (Figures 7A and S7) By contrast no detectable changes were found in 294
mRNA levels of a cohort of anther-expressed candidate genes encoding Sus H+sugar 295
transporters and hexokinase and Glc and Fru content (Figure S7) 296
Apart from starch metabolism auxin also plays important roles in filament 297
elongation anther dehiscence and pollen maturation (Cecchetti et al 2008 Feng et al 298
2006 Sundberg and Oslashstergaard 2009) This together with recent progresses on the 299
roles of sugars in auxin biosynthesis and signaling (Wang and Ruan 2013) prompted 300
us to investigate the expressions of auxin-related genes in -1 d stamen Several 301
stamen-expressed candidate genes involved in auxin biosynthesis transport and 302
perception were chosen to measure their mRNA levels based on previous studies (eg 303
Min et al 2014) Most notably the transcripts of two auxin biosynthesis genes 304
GhTAA1 and GhYUC5 were significantly reduced in the RNAi stamen (Figure 7B) 305
The auxin signaling gene GhABP1 was reduced in its transcript level in two lines 306
whereas GhARF1 showed increased expression in line 15-4-2 and its paralog GhARF2 307
exhibited a decreased mRNA level in this line as well as in line 28-4-1 (Figure 7C) 308
No difference was observed in the transcript levels between the transgenic and the WT 309
stamen for the other two auxin biosynthesis genes GhTAR2 and GhYUC11 and an 310
auxin influx carrier GhAUX1 and two efflux transporter genes GhPIN2 and GhPIN3 311
(Figure S8) 312
In addition to auxin jasmonic acid (JA) is another hormone known to be a critical 313
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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- 28 -
failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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regulator in filament extension anther dehiscence and pollen viability (Ishiguro et al 314
2001 Scott et al 2004) and hexose signaling is involved in JA biosynthesis and 315
signaling (Hamann et al 2009) In cotton a pollen specific R2-R3 MYB gene 316
GhMYB24 and a 9-lipoxygenase gene GhLOX1 have been identified to regulate late 317
anther and pollen development in response to JA signaling (Marmey et al 2007 Li et 318
al 2013) The GhMYB24 transcripts level was reduced by 59 31 and 34 of that 319
in WT in the -1d stamens of the RNAi lines 15-4-2 28-4-1 and 61-9-1 respectively 320
with the GhLOX1 mRNA level reduced by ~ 90 in line 15-4-1 and by ~80 in the 321
remaining two lines (Figure 7D) The data show that suppression of GhVINs blocked 322
the expression of these JA signaling genes in the stamen 323
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
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324
Female sterility in GhVIN1-RNAi plants was originated from seed rather than 325
style or ovule 326
In addition to the low paternal fertility maternal defect was also found to contribute to 327
poor seed set (Figures 5 and S5) In broad term the maternal defect could derive from 328
ovule or style in the pistil or seed coat and nucellus in the seed To this end the RDL1 329
promoter used to drive the transgene expression was not active in cotton ovules 330
(Figure S6A and C Guan et al 2011) and the GhVINs transcripts and VIN activity 331
were also undetectable in WT ovules (Wang et al 2010 2014) Similar to that in the 332
ovules the RNAi styles exhibited no or little RDL1-GUS signals (Figure S6A) 333
Moreover there was only traceable level of GhVIN1 mRNAs detected in -1d style 334
tissues that showed no difference between the RNAi and WT plants (Figure S9) 335
Together both styles and ovules can be excluded as the source of maternal defects In 336
other words the problem comes from the seeds 337
338
Suppression of GhVINs in seed maternal tissue resulted in programmed cell 339
death or growth arrest in the filial tissue 340
The un-developed seedsovules remained in the size of ovule with no or little 341
expansion (Figure 2) hence became readily recognizable by 5 DAA The biochemical 342
changes underlying the growth arrest however must have happened beforehand 343
Given that inhibition of Suc-to-Hex conversion has been shown to trigger or associate 344
with programmed cell death (PCD) in maize ovaries (Boyer and McLaughlin 2007) 345
and tomato fruitlets (Li et al 2012) we next performed TUNEL assay on 3d cotton 346
seeds to examine possible PCD in the GhVIN1-RNAi seeds 347
As a technical positive control seed sections were treated with DNase which 348
resulted in strong green florescent TUNEL signals throughout the entire seeds (Figure 349
8 A-B) Similar PCD pattern was observed in the biological positive control (Figures 350
8 E-F) in which WT ovules were emasculated at -1d and harvested at 3d By contrast 351
no TUNEL positive signals were observed in the WT seed derived from fertilized 352
ovules (Figures 8 C-D) indicating PCD did not occur in WT seed at this stage 353
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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- 25 -
of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Significantly strong PCD signals were detected in the 3 d seeds from the RNAi line 354
15-4-2 While about half of the tested RNAi seeds exhibited PCD signals all over the 355
seed coat and filial tissues similar to the WT-emasculation control (Figure 8F) 356
reflecting the contribution of paternal defect to the undeveloped seed the others 357
displayed PCD signals confined to nucellus and filial tissues but not in the seed coat 358
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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(Figure 8H) To determine if maternal defect is involved in the cell death in the RNAi 359
seeds TUNEL assay was also performed on sections of hybrid seeds derived from a 360
cross between RNAi () x WT () The analyses revealed that among the 10 seeds 361
tested 7 seeds displayed PCD signals strongly in the embryo and endosperm and 362
weakly in the nucellus but not in seed coat and fiber cells (Figure 8J) This finding 363
indicates that the PCD in the filial tissues was resulted from maternal defect Overall 364
the data matched with the early genetic analyses that the un-developed seeds are 365
largely due to paternal defects with a small portion of it attributable to maternal 366
defects (Figure 5 and Figure S5) The TUNEL assay was repeated using a colorimetric 367
reaction with similar results obtained (Figure S10) 368
In situ hybridization analyses showed strong GhVIN mRNA signals in outer seed 369
coat and fiber cells of the 3 d WT seeds with little signal detected in the filial tissues 370
(Figure 9 A-D) qPCR measurements revealed significant reductions of the GhVIN1 371
and GhVIN2 transcript levels in the 3 d RNAi seeds across all the three RNAi lines 372
(Figure 9E) leading to significant reductions of VIN activity by ~ 50 to 80 and 373
Glc and Fru content by ~50 to 60 with no effect on CWIN activity and Suc level 374
(Figure 9 F-G) 375
Apart from the un-developed seeds the transgenic cotton bolls also produced 376
some under-developed seeds which were able to expand to a certain extent (Figure 2I 377
and L) but were unviable as well Histological analyses revealed that by ~15 DAA 378
the normally-developed seeds have produced torpedo embryos with cellularized 379
endosperms (Figure 10A B E and e) while the under-developed seeds were still in 380
the globular-heart embryo stage with limited or abnormal endosperm cellularization 381
(Figure 10 C D F-g) By 30 DAA WT embryos were fully expanded with 382
endosperm completely absorbed (Figure 10H and h) whereas in the under-developed 383
transgenic seeds embryo development were stunted with residual endosperm tissue 384
remained (Figure 10 I-j) Interestingly many of the under-developed seeds had 385
normal seed sizes (Figures 2I-L and 10 I and J vs H) indicating cell expansion in the 386
GhVIN1-RNAi seed coat were largely unaffected and the suppression of their filial 387
tissues growth was not due to physical constrain imposed by the seed coat 388
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Impaired embryonic development in GhVIN1-RNAi seeds was associated with 389
disrupted expression of genes for trehalose and auxin metabolism and signaling 390
Finally we examined how suppression of GhVINs in the maternal seed tissue could 391
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lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 22 -
lead to embryonic arrest in the under-developed seed by targeting seeds at 10 DAA 392
At this stage the un-developed ovule-like seeds were readily distinguishable and 393
removed from the samples and seed coat and filial tissues could be easily separated 394
qPCR analyses revealed that in the 10 d WT seed the mRNA levels of both 395
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- 23 -
GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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- 25 -
of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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- 26 -
DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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- 27 -
caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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- 28 -
failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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GhVIN1 and GhVIN2 were about ten times higher in the seed coat than that in the 396
filial tissue (Figure 11A) consistent with in situ hybridization data from 3 d seeds 397
(Figure 9) and genetic evidence that the under-developed seed phenotype was 398
predominately under maternal control (Figure S5D) As compared to that in WT the 399
GhVIN1 expression in transgenic seed coat and filial tissue was extremely low (le10 400
of that in WT) in about half of the tested samples (replicates a) but was not or only 401
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slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 24 -
slightly reduced in the remaining seed samples (replicates b) (Figure 11A) As we 402
used the 10-d seeds from one cotton boll as one replicate which was a mixture of 403
normal-grown transgenic seeds and under-developed seeds at 10 DAA it is very 404
likely the that cotton bolls with high proportions of under-developed seeds would 405
have significantly reduced GhVIN1 transcripts (replicates a) while the replicates b 406
probably contained those with lower percentage of under-developed seeds It is 407
worth noting GhVIN1 is the dominating VIN genes expressed in cotton seeds (Wang 408
et al 2014) evidenced by its transcript levels being more than 40 times of GhVIN2 in 409
the seed coat and filial tissue (Figure 11A) Compared to WT the expression of 410
GhVIN2 was also co-silenced by the GhVIN1-RNAi construct in the replicates a but 411
not in replicates b of the transgenic seed coat (Figure 11A) Apart from GhVINs the 412
expression of CWIN and Sus genes were largely unaffected in 10 d seeds (Figure 413
S11B) 414
The above analyses show that repression of GhVINs in seed coat was most likely 415
the cause of maternal defects it remains intriguing how this could result in growth 416
arrest or even cell death in the filial tissue without obvious effect on seed coat 417
development (Figures 8-10) In this context trehalose-6-phosphate (T6P) an 418
intermediate in trehalose metabolism has emerged as a global regulator of carbon 419
metabolism and plant growth in response to sugar availability (OrsquoHara et al 2013 420
Lunn et al 2014) Moreover the embryos of Arabidopsis trehalose-6-phosphate 421
synthase 1 mutant develop more slowly than wild type and do not progress through 422
the torpedo-to -cotyledon stage (Gόmez et al 2005) In light of this information we 423
examined whether expression of T6P-matabolism related genes was altered in the 424
GhVIN1-RNAi cotton seeds 425
Sequences analyses identified two trehalose-6-phosphate synthase (TPS) and 426
three trehalose-6-phosphate phosphatase (TPP) genes from the cotton genome Within 427
the seed coat while the transcript levels of two TPS genes were largely unaffected in 428
the RNAi lines GhTPP3 displayed increased mRNA levels in replicates a (with 429
strong GhVIN1 suppression suggesting high percentage of under-developed seeds) 430
but not in replicates b (with weak GhVIN1 suppression and probably low percentage 431
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- 25 -
of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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- 27 -
caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 25 -
of under-developed seeds) across all the lines examined indicating a response to the 432
severe GhVIN1 silencing The GhTPP1 transcript level was reduced in both replicates 433
a and b which may reflect an indirect effect from the suppression of GhVIN1 (Figure 434
11B) In the filial tissue the mRNA level of GhTPS2 was dramatically reduced in the 435
replicates a across the three RNAi lines (Figure 11B) 436
The formation of a viable seeds requires effective communication among the 437
maternally-derived seed coat and the zygotic embryo and endosperm to ensure their 438
coordinated development One of the most important signaling molecules required for 439
this communication is auxin (Locascio et al 2014) Prompted by the regulatory roles 440
of Glc in auxin biosynthesis (LeClere et al 2010 Sairannen et al 2012) and 441
signaling (Mishra et al 2009 Wang et al 2014) the expression of a cohort of auxin 442
biosynthesis and signaling genes were then examined in 10 d seed For the three tested 443
auxin signaling genes GhABP1 GhARF1 and GhARF2 their transcript levels were 444
greatly reduced in seed coat especially in those with GhVIN1-strongly suppressed 445
samples (replicates a Figure S12B) Within the filial tissue declined GhABP1 446
expression was also observed in RNAi line 28-4-1 and 61-9-1 replicates as compared 447
to that in WT (Figure S12B) Among the six highly-expressed auxin biosynthesis 448
genes significantly reduced GhTAA1 transcript level was observed in the filial tissues 449
of all three lines while the transcript level of GhTAA1 GhYUC2 and GhYUC5 was 450
increased in the replicates a seed coat samples of line 61-9-1 15-4-2 and 28-4-1 451
respectively (Figure S12B) Clearly the expressions of genes related to auxin 452
biosynthesis and signaling response were disrupted in 10 d transgenic coat seed and 453
filial tissues 454
455
456
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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DISCUSSION 457
Despite the general recognition that reproductive success relies heavily on Suc 458
metabolism to acquire carbon nutrient energy and signals for the development of 459
different reproductive tissues it remains elusive how Suc metabolism couples with 460
complex reproductive development at the cellular and molecular levels (Ruan et al 461
2012 Nuccio et al 2015) Here we provided genetic and developmental evidence that 462
VIN exerts strong control over floral development and the formation of male and 463
female fertilities thereby acting as a major player for seed set and subsequent 464
development in cotton As such the study provides significant insights into the 465
intimate linkage between VIN-mediated Suc metabolism and plant reproductive 466
development and opens up new perspectives for genetic modifications to enhance 467
crop seed development 468
469
VIN is required for floral morphogenesis and the formation of male and female 470
fertilities 471
The data obtained in this study show that the expression of cotton VIN genes is 472
required for proper pollination fertilization seed set and subsequent seed 473
development First a large proportion of the flowers in the GhVIN1-RNAi cottons 474
exhibited abnormal flower structures (Figures 3 and S2) indicating a role of VIN in 475
floral morphogenesis Second suppressing GhVIN expression in the stamen delayed 476
anther dehiscence hence pollen release (Figures 3 and S3) and reduced pollen 477
viability and pollen tube germination (Figures 5-6) Third suppression of GhVINs in 478
seed maternal tissue resulted in programmed cell death or growth arrest in the filial 479
tissue (Figures 8-10) 480
The above reproductive defects collectively led to the production in the 481
GhVIN1-RNAi bolls of a large number of unviable seeds classified as un-developed 482
seedsovules and under-developed seeds The former was resulted from (a) pollination 483
failure because of spatially unmatched development between stamen and pistils or 484
delayed pollen release (b) fertilization failure due to poor pollen viability and (c) seed 485
abortion owing to the nucellus and filial tissue cell death early in seed development 486
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caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
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Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
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- 27 -
caused by maternal defects On the other hand the under-developed seeds were 487
largely attributable to female sterility based on data from reciprocal crosses (Figure 488
S5) resulting in growth arrest of the filial tissue evident at about 10-15 DAA (Figure 489
10) Together the analyses identify VIN as a major regulator for diverse reproductive 490
processes from floral development to the formation of male and female fertilities To 491
our knowledge this represents an unprecedented example on the control of such 492
diverse aspects of reproductive development by a sugar metabolic enzyme Consistent 493
with our finding there have been no reports on VIN mutants in any crop species as 494
such a mutant is likely reproductively lethal based on what we found in this study 495
Biochemically VIN activity may regulate reproductive development through 496
modulating cytoplasmic hexose levels and sugar signaling Flux analysis and 497
modelling of sugar metabolism in tomato pericarp indicate that VIN-catalyzed 498
sucrolytic activity in the vacuole induces hexose efflux from vacuole into cytoplasm 499
coupled with Suc influx during cell division of fruit development (Beauvoit et al 500
2014) Thus VINs are able to regulate not only vacuolar sugar homeostasis but also 501
cytosolic hexose levels through coupling with the activities of tonoplast sugar 502
transporters Altering cytosolic hexose levels could have profound impact on gene 503
expression through sugar signaling in parallel to its central role in sugar metabolism 504
(Ruan 2014) In agreement with this view is the altered gene expressions for starch 505
and trehalose metabolism and auxin and JA synthesis and signaling in the 506
GhVIN1-RNAi stamen and seed (Figures 7 and 11 and Figure S12) The alteration in 507
gene expression observed in stamen and developing seeds are likely the direct effect 508
of decreased GhVIN gene expression since the intervention did not appear to affect 509
the expression of genes encoding other sucrose- degradation enzymes (CWIN and Sus) 510
or sugar transporters (Figure 9 Figures S7 and S11) 511
512
VIN contributes to male fertility probably through impacting on starch 513
metabolism and auxin and JA synthesis and signaling in stamen 514
The paternal defects observed in the GhVIN1 RNAi plants include delayed pollen 515
release and reduced pollen viability (Figures 3 and 4) The defects caused pollination 516
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- 28 -
failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 28 -
failures rendering the ovules unable to develop into seeds (Figures 2 and 5) 517
The delay in pollen release from the transgenic anthers may arise from a 518
combination of (a) incomplete septum degradation and impaired endothecium 519
secondary thickening and (b) inadequate anther wall dehydration before anthesis due 520
to reduced starch accumulation in filament and anther-filament conjunction region 521
(Figure 4) The starch-to-sugar conversion would increase the osmotic potential in 522
filament to facilitate water efflux from anthers leading to anther dehiscence (Bonner 523
and Dickinson 1990 Stadler et al 1999) The reduced starch in the GhVIN1-silenced 524
stamen is likely owing to (i) decreased starch synthesis as indicated by the reduced 525
expression of two ADP-glucose pyrophosphorylase genes (GhAGPase1 and 526
GhAGPase2) and (ii) compromised starch hydrolysis as suggested by the 527
down-regulation of an α-amylase gene GhαAmy (Figures 7A and S7) These data 528
indicate that starch turnover is disrupted in the GhVIN1-RNAi stamen which could 529
result in not only a delay in anther dehiscence but also poor pollen viability as starch 530
abundance is critically required for pollen vigor (Cleacutement et al 1994 Goetz et al 531
2001 Datta et al 2002) 532
Suppression of GhVINs also reduced the transcript levels of GhMYB24 and 533
GhLOX1 in the transgenic stamens (Figure 7) Both genes have been shown to 534
regulate late anther and pollen development via JA signaling (Marmey et al 2007 Li 535
et al 2013) Moreover the transgenic stamen was also characterized with declined 536
expressions of auxin biosynthesis genes GhTAA1 and GhYUC5 an auxin signaling 537
receptor gene GhABP1 and an auxin responsive factor GhARF2 (Figure 7) Auxin and 538
JA metabolism and signaling are of importance in anther differentiation and 539
dehiscence and pollen development (Ishiguro et al 2001 Yang et al 2007 Cecchetti 540
et al 2008 Li et al 2013 Nashilevitz et al 2009) Silencing GhVIN expression may 541
alter the expression of these genes through modulating cytosolic sugar homeostats and 542
sugar signaling Although the exact nature of such a regulation remains to be 543
elucidated our data revealed a new linkage between VIN-mediated sugar metabolism 544
and male fertility potentially through VIN-mediated regulation of starch turnover and 545
auxin and JA synthesis and signaling 546
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 29 -
547
Seed coat GhVIN expression may be required for adequate sugar supply and 548
balanced sugar and auxin signaling to support filial tissue development 549
Apart from the paternal defects in the GhVIN1-RNAi plants maternal sterility was 550
also partially responsible for the generation of un-developed seed and was largely 551
accountable for the under-developed seed phenotype (see Figures 5 and S5) An 552
intriguing finding was that although GhVINs were predominately expressed in the 553
seed coat as indicated by in situ hybridization and qPCR results (Figures 9 and 11) 554
the suppression of GhVINs had little phenotypic effect on the seed coat but evident 555
negative impact on filial tissues characterized by their cell death at 3 DAA (Figure 8) 556
and growth arrest at 10 DAA (Figure 10) Why filial tissues are more sensitive than 557
seed coat to the down regulation of largely maternally-expressed GhVINs 558
One possibility is that VIN activity in the seed coat may be essential for nutrient 559
flow to the filial tissues In cotton seed Suc is unloaded symplasmically from the 560
phloem in the outer seed coat (Ruan et al 1997 Wang and Ruan 2012) High VIN 561
activities and gene expressions have been observed in WT cotton outer seed coat 562
during early seed development (Wang et al 2010) along with strong Sus expression 563
and activity in the seed epidermis (Ruan et al 2003) These Suc-cleavage enzymes in 564
the outer seed coat are essential for lowering local Suc concentration to facilitate 565
phloem unloading (Ruan et al 1996 Wang et al 2014) Suppression of GhVIN 566
expression could dampen Suc-to-Glc Fru conversion hence reducing sink strength 567
and phloem unloading This is indicated by the significant decrease in Glc and Fru 568
content in 3 d GhVIN1-RNAi seeds (Figure 9) Pertinently VIN is the major enzyme 569
hydrolyzing Suc in tomato pericarp at cell division stage (Beauvoit et al 2014) when 570
unloading occurs symplasmically (Palmer et al 2015) 571
For subsequent translocation into the filial tissues in cotton seed assimilates must 572
pass two symplasmically disconnected cellular sites between outer and inner seed 573
coat and between maternal and filial tissues (Ruan et al 1997 Wang and Ruan 574
2012) High CWIN expression at both interfaces (Wang and Ruan 2012) may 575
facilitate the hexose production in these sites Thus it is possible that hexose derived 576
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 30 -
from the maternal VIN and CWIN activities is the major carbon source transported 577
into the filial tissues of developing cotton seed Indeed hexose could dominate over 578
Suc in their import into endosperm during early seed development in Arabidopsis 579
(Baud et al 2005 Chen et al 2015) and maize (Sosso et al 2015) These findings 580
underpin the importance of sucrolytic activities in channeling carbon from maternal to 581
filial tissues GhVIN1-RNAi mediated reduction of VIN activity in the seed coat likely 582
block hexose generation (Figure 9) and its flow to filial tissues causing carbon 583
starvation and even PCD (Figure 8) The correlation between low Glc and activation 584
of some PCD genes has been observed in maize grain under drought (Boyer and 585
McLaughlin 2007) and tomato fruit under heat stress (Li et al 2012) 586
While some seeds were blocked entirely thus becoming ovule-like un-developed 587
seeds in the GhVIN1-RNAi lines others were able to survive the early stage in which 588
the endosperm and embryo developed to certain extent but became arrested at 589
torpedo stage (Figure 10) The latter had comparable seed coat as fully-developed 590
seeds After fertilization a signal from the syncytial endosperm is considered to play 591
crucial role in triggering seed coat cell expansion and regulating seed size in 592
Arabidopsis (Chaudhury et al 2001 Garcia et al 2003) Once seed coat cell 593
expansion has initiated it develops independently from endosperm and embryo 594
(Haughn and Chaudhury 2005) Thus the seed coat in un-developed seeds probably 595
has received no or impaired initial signal for its growth while the under-developed 596
seeds may have acquired such a signal from the endosperm during nuclear division (~ 597
3-5 DAA in cotton- Wang and Ruan 2012) allowing their seed coats to be fully 598
developed Consistently the endosperm in the under-developed seed appeared to 599
develop until the cellularization stages at ~10 DAA (Figure 10 but also see Ruan et 600
al 2008) when its increased sugar demand for cell wall synthesis could become 601
unsustainable due to suppression of GhVINs expression in the maternal seed coat as 602
discussed previously 603
Silencing GhVINs altered the expression of two GhTPP genes in the seed coat 604
and reduced the transcript level of GhTPS2 in the filial tissue (Figure 11) suggesting 605
trehalose metabolism may have been affected in the transgenic seed which could 606
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 31 -
compromise filial tissue development The effect of trehalose metabolism and 607
signaling on grain set has been recently demonstrated in maize (Nuccio et al 2015) 608
Another well-known signaling molecule involved in seed maternal-filial 609
communication is auxin Here the GhVIN1-suppressed transgenic seed exhibited a 610
disruption of gene expressions in relation to auxin biosynthesis and signaling 611
perception (Figure S12) Reduced gene expression for auxin biosynthesis has been 612
observed in the maize CWIN mutant (LeClere et al 2010) The likely compromised 613
trehalose and auxin metabolism and signaling may also contribute to the blockage of 614
filial development in the under- developed seeds 615
616
VIN along with CWIN could act as a gatekeeper for reproductive success under 617
abiotic stress 618
Finally much of the phenotype we observed in the GhVIN1-RNAi cotton plant 619
resembles the symptoms of plants suffered from abiotic stress For example heat 620
stressed-cotton plants also exhibit abnormal stigma protrusion delayed anther 621
dehiscence and reduced pollen viability (Brown 2001 Snider et al 2009 Min et al 622
2014) and high rates of boll shedding and seed abortion (Powell 1969 Reddy et al 623
1992 Brown 2001) Min et al (2014) also reported that the impaired anther and 624
pollen development under high temperature were associated with reduced expressions 625
of INV and starch synthesis genes decreased glucose level as well as disrupted auxin 626
biosynthesis Similarly wheat male reproductive failure under water deficit was 627
related to declined VIN (Ivr5) and CWIN (Ivr1) gene expression in pollens (Koonjul et 628
al 2005) Indeed maize soluble acid invertase (VIN gene Ivr2) was identified as an 629
early target of drought stress during maize ovule abortion (Andersen et al 2002) 630
Similarly high heat tolerance in tomato flower and young fruit correlates with strong 631
VIN and CWIN activities (Li et al 2012) Collectively VINs along with CWINs 632
appear to act as a common downstream lsquogatekeeperrsquo in sustaining reproductive 633
fertilities under abiotic stress likely through maintaining sink strength and cytosolic 634
sugar homeostasis and signaling 635
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 32 -
Materials and Methods 636
Plant growth condition pollination and bud thinning treatments 637
Wild type and transgenic cotton (G hirsutum cv Coker312) plants were grown in 638
greenhouse according to Wang et al (2010) GhVIN1-RNAi cotton lines were 639
generated as previously described (Wang et al 2014) Flower stamen ovule or seed 640
samples were excised from developing flower buds or cotton bolls at the specified day 641
after anthesis (DAA) The numbers of cotton flowers and bolls were counted 642
throughout the whole growth cycle Seed number was counted by boll maturity 643
For hand-pollination flower buds were emasculated at -1 DAA and stigmas were 644
pollinated in the next day at ~10 am Each cotton stigma requires ~100 viable pollen 645
grains to fully fertilize the ovules in a given cotton boll (Waller and Mamood 1991) 646
We collected more than 10000 pollens from a single flower for pollination of a 647
maximum three stigmas to ensure adequate pollination 648
For bud thinning experiment all cotton buds except 4 buds at nodes 6 to 9 were 649
removed at pinhead square stage (~3 weeks before flowering) 650
651
Pollen germination and pollen tube elongation 652
Pollen grains were collected shortly after anther dehiscence in the morning and 653
immediately tapped onto the germination medium modified from that described by 654
Burke et al (2004) It contains 005 H3BO4 002 Ca(NO3)2 001 KNO3 002 655
MgSO47H2O and 25 sucrose with pH 60 Pollen grains from one flower were 656
collected into one Petri dish as one biological replicate Pollens were incubated in the 657
dark at 28 for 2 hours before microscopic observation (Zeiss Axiophot D-7082) A 658
pollen grain with pollen tube length longer than or at least equal to grain diameter was 659
considered to be germinated (Kakani et al 2002) Germination rate was determined 660
by dividing number of germinated pollen grain by the total number of pollens Pollen 661
tube length was measured using the Image J program (httprsbinfonihgovij) 662
663
Histological analyses 664
For pollen viability test fresh flowers were collected shortly after germination and 665
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
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- 33 -
pollens were gently tapped into the modified pollen germination medium with an 666
addition of 5μg ml-1 fluorescein diacetate (FDA) After 5 min incubation pollens 667
were examined microscopically under UV excitation and a long-pass GFP emission 668
filter 669
To observe the number of pollens captured by stigma fresh flower were collected 670
at ~3-4 h after anther dehiscence Stigmas were stained by 01 aniline blue in 67mM 671
K2HPO4-KH2PO4 buffer (pH75) for 5 min Pollen grains exhibited green 672
fluorescence from aniline blue -bound callose under UV 673
For in vivo pollen tube elongation observation stigmas were collected at various 674
times after pollination The tissues were fixed in cold FAA fixation buffer (4 675
formaldehyde 70 ethanol 10 acetic acid) overnight rehydration with gradient 676
ethanol and water soften in 1M NaOH overnight rinsed by 01M K2HPO4-KH2PO4 677
buffer (pH85) and then stained by 01 aniline blue for 4 h Stigma tissue was 678
squashed gently before observation under UV 679
For anther structure observation -1d anther were fixed dehydrated embedded 680
sectioned stained with toluidine blue and examined according to Regan and Moffatt 681
(1990) To estimate the deposition of callose and the secondary wall thickening the 682
sections were stained with 1 aniline blue in 01M K2HPO4-KH2PO4 buffer pH85 683
for 5 min followed by visualization under UV 684
For starch localization -1d anther sections and -1d flower (with sepal and petal 685
removed) were stained by KI-I2 (2 KI 05 I2) for 10 s and 3 min respectively 686
687
RNA extraction and reverse transcription 688
For RNA extraction -1d stamen or style from one cotton flower and ovules seeds 689
seed coats or filial tissues from one cotton boll were collected as one biological 690
sample Total RNA was isolated according to Ruan et al (1997) About 05μg RNA 691
was treated by RQ1 RNase-free DNase (Promega) and then reverse transcribed to 692
cDNA using SuperScriptTM First-strand synthesis system (Invitrogen) with 50μM 693
Oligo dT(20) according to manufacturerrsquos recommendations 694
695
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 34 -
Real-time Quantitative RT-PCR (qPCR) analysis 696
qPCR was performed with SYBRreg Green and PlatinumregTaq DNA Polymerase (Life 697
Technologies) on a Rotor-Gene Q instrument (QIAGEN) following amplification 698
cycles as below 10 min at 95degC followed by 40 rounds of 10 s at 95degC 20 s at 60degC 699
and 20 s at 72 degC A product melting curve was used to confirm a single PCR product 700
at the end of amplification Gene-specific primers used for qPCR are listed in Table 701
S1 along with the GenBank accession numbers of the tested genes Primer sets 702
efficiencies (E) were estimated for each experimental set by Rotor-Gene 6000 Series 703
Software (QIAGEN) 704
Among the cotton reference genes of F-box family gene GhFBX6 catalytic subunit 705
of protein phosphatase 2A GhPP2A1 poly-ubiquitin gene GhUBQ14 and actin gene 706
GhACT4 (Artico et al 2010) a combination of GhFBX6 and GhUBQ14 displayed the 707
most stable expressions among WT and GhVIN1-RNAi cotton cDNA samples based 708
on analysis from RefFinder program 709
(httpwwwleonxiecomreferencegenephptype=reference) and geNORM software 710
(httpmedgenugentbe~jvdesompgenorm) and therefore were used as internal 711
control genes in this study All calculations of expression levels were performed on 712
quantities (Q) which were calculated via the ΔCq method with the formula Q = 713
(E)ΔCq (Hellemans et al 2007) ΔCq equals Cq of the sample with the lowest Cq 714
value (highest abundance) minus Cq of a sample Efficiency (E) corrected relative 715
amount were calculated The levels of target-gene expressions were normalized to the 716
geometric mean of GhFBX6 and GhUBQ14 by subtracting the cycle threshold value 717
of internal gene set from the cycle threshold value of the target genes 718
719
In-situ hybirization 720
In situ hybridization experiments were carried out according to Wang et al (2010) 721
722
Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) 723
Sections of paraffin embedded cotton ovule or seed samples were dewaxed with 100 724
histolene rehydrated in a graded ethanol series and permeabilized in proteinase K 725
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
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- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
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- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 35 -
Nick-end labeling of fragmented DNA was performed using the Fluoresce In situ Cell 726
Death Detection Kit (Roche) or DeadEnd Colorimetric TUNEL system (Promega) 727
according to the manufacturersrsquo instructions Slides were analyzed microscopically 728
(Zeiss Axiophot D-7082) under bright field (colorimetric TUNEL) or green 729
fluorescent channel (fluorometric TUNEL) 730
731
Invertase enzyme assay and sugar measurement 732
Invertase activities and sugar levels were measured enzymatically as described in 733
Wang et al (2010) 734
735
Statistical analyses 736
Unless otherwise specified randomization one-way analysis of variance test 737
(ANOVA) was used for the comparisons among WT and different RNAi lines Means 738
were compared using all pairs Turky HSD test Statistical calculations of ANOVA 739
were performed using JMP 11 statistics software 740
Generalized linear mixed model (GLMM- see Jinks et al 2006 Bolker et al 2009) 741
was used to analyze the cotton seed numbers in the hand-pollination 742
cross-hybridization cotton bud thinning treatments It was a two level hierarchical 743
(each of 3 types seed within each of 3 or 4 genotypes nested with 5 different 744
treatmentscontrol) randomized design Statistical calculations were performed using 745
SASreg 92 (SAS Institute Inc Cary NC USA) Data sets were natural logarithm (Ln) 746
-transformed because data distribution of model residuals were not normal A p-value 747
lt005 was considered significant 748
749
Acknowledgements 750
This work was supported by Chinese National Science Foundation and Australian 751
Research Council to Y-L Ruan We thank XY Chen and H Lian (Shanghai Institute of 752
Plant Physiology and Ecology Chinese Academy of Sciences) for providing the 753
RDLGUS transgenic cotton seeds and performing GUS staining We also thank Kim 754
Colyvas (University of Newcastle Australia) for help in statistical analyses 755
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 36 -
Figure legend 756
Figure 1 GhVINs-RNAi plants exhibited reduced boll and viable seed number as 757
compared to that in WT plants 758
Data are presented in box plots where the horizontal line within the box represents the 759
median while the top and bottom of the box represent the value in 75 and 25 of 760
the population respectively The extent of the vertical line indicates the maximum 761
and minimum of the data Data in (A) and (B) were collected from 8 individual plants 762
of each T3 line at full maturity from two independent trials For the viable seed 763
number in (C) data were collected from cotton bolls harvested from at least 6 764
individual plants of each T3 transgenic line with the total boll number indicated 765
above each box plot Asterisks indicate significant differences between WT and a 766
given RNAi line (one-way ANOVA plt005 plt001 plt0001) 767
768
Figure 2 The unviable cotton seeds comprised un-developed and 769
under-developed seeds from the GhVIN1-RNAi lines 770
(A-L) Representative images of 30-d cotton bolls and the seeds from WT (A-C) and 771
lines 15-4-2 (D-F) 28-4-1 (G-I) and 61-9-1 (J-L) The un-developed seeds are 772
indicated by red arrows and dash lines (E F K and L) whereas the under-developed 773
seeds are shown by the yellow arrowheads and dash lines (F H I K and L) Bars = 774
1cm 775
(M) The proportions of the fully-developed un-developed and under-developed seeds 776
per boll in WT and T3 GhVIN1-RNAi plants Each value is the mean plusmn SE of at least 777
30 cotton bolls from 8 individuals of each line in two independent trials Different 778
letters indicate significant difference at plt005 according to one-way ANOVA 779
780
Figure 3 Silencing GhVIN1 in cotton disrupted style and stamen development 781
delayed anther dehiscence and reduced pollen number 782
(A) Representative images of 0-d transgenic flowers with petals removed showing 783
the uncoordinated style protrusion and stamen development in the RNAi plants as 784
compared to that of WT The red arrowheads indicate indehiscent anthers Yellow 785
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 37 -
brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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1045
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brace indicates the stamen region measured in (B) 786
(B) GhVIN1-RNAi flowers displayed longer styles or shorter filaments decreased 787
stamen region and less stamen and pollen numbers per flower Each value is the mean 788
plusmn SE with data collected from 8 flowers of 4 individual plants for each line 789
Asterisks denote significant difference (one-way ANOVA plt005 plt001 790
plt0001) between RNAi and WT 791
(C-E) Anther dehiscence occurred on the day of flowering in WT (C) but not in the 792
RNAi line 15-4-2 (D) The latter dehisced 1 d later (E) 793
(F) Less pollens were detected in transgenic styles as compared to that in WT on the 794
day of flowering Styles were stained with aniline blue (left panel bright field) and 795
viewed under UV to show the fluorescence emitted from the stained pollen grains in 796
boxed regions (i ndash iii) 797
Bars = 1 cm in (A) 200 μm in (C) and 5 mm in (F) The scales in (D) and (E) are the 798
same as that in (C) 799
800
Figure 4 GhVIN1-RNAi lines displayed unthickened endothecium walls 801
incomplete septum degradation in a certain number of -1d anthers reduced 802
starch accumulation in -1d stamens and lowered pollen viability and pollen tube 803
germination rates 804
(A-F) Representative images of -1d WT (A and B) RNAi lines15-4-2 (C and D) and 805
61-9-1 (E and F) anther sections stained with aniline blue observed under bright field 806
(A C and E) and UV (B D and F) Red arrows indicate the position of anther wall 807
(G-H) Representative images of -1d WT (G) and RNAi 15-4-2 (H) anther sections 808
stained with toluidine blue Note the remaining septum (arrowheads in H) but its 809
absence in G 810
(I) Representative image of WT and transgenic -1d stamens and styles stained with 811
KI-I2 812
(J-M) Magnified views of stamen from WT (J) RNAi 15-4-2 (K) RNAi 28-4-1 (L) 813
and RNAi 61-9-1 (M) respectively Compared to the strong staining of starch in the 814
WT stamen by KI-I2 indicated by the dark color the transgenic stamen exhibited 815
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 38 -
much weaker staining in filaments and especially at the anther-filament joint regions 816
(yellow arrows and arrowheads respectively) 817
(N-O) Bright-field and green fluorescence images of the same set of mature pollen 818
grains stained with FDA from WT and RNAi line15-4-2 (N) Pink arrows indicate 819
malformed pollen grains Blue arrowheads point to pollen grains with lost viability 820
The proportions of viable pollen grains determined by FDA staining was significantly 821
reduced in the transgenic lines as compared to that in WT (O) Each value is the 822
mean plusmn SE from four biological replicates 823
(P) Pollen germination rates were significantly reduced in the GhVIN1-RNAi lines as 824
compared to that in WT Each value is the mean plusmn SE of 8 flowers from 4 plants for 825
each line 826
Bars = 100 μm in (A) (C) (E) (G) and (N) and 1 cm in (I) and the scales in (B) 827
(D) (F) and (H) are the same as that in (A) (C) (E) and (G) respectively Asterisks 828
indicate significant difference between RNAi and WT in (O) and (P) based on 829
one-way ANOVA after arcsine transformation ( plt005 plt001 plt0001) 830
831
Figure 5 Impact of hand-pollination (A) reciprocal crossing (B) and bud 832
thinning(C) on seed fertility in GhVIN1-RNAi lines 833
The percentages of fully-developed seeds in total ovules were calculated for the 834
non-treated control (C) hand-pollinated bolls (H) reciprocal-cross hybrids and bolls 835
after bud thinning and hand pollination (T+H) Each value is the GLMM estimated 836
mean plusmn SE Data were collected from at least 20 bolls from at least 5 individual plants 837
for each line Different letters indicate significant difference at plt005 according to 838
GLMM 839
840
Figure 6 GhVIN transcripts were abundant at the anther-filament joint region 841
and in pollens of WT cotton stamen but were evidently reduced in 842
GhVIN1-RNAi lines resulting in decreased VIN activities 843
(A-D) A longitudinal-section of -1d WT cotton anther hybridized with a sense (A) and 844
an antisense (B) RNA probes for GhVINs Note GhVIN mRNA signals in the circled 845
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 39 -
anther-fiament joint area in (B) as compared to the same region in the sense control 846
(A) 847
(C) and (D) are magnified views of pollens in the boxed area of (A) and (B) 848
respectively showing strong GhVIN mRNA signals in WT pollens 849
(E) qPCR analyses of GhVIN1 GhVIN2 and GhCWIN1 transcripts in -1d WT and 850
transgenic stamen Data represent mean plusmn SE (n ge 6) 851
(F) VIN CWIN and CIN activities in -1d WT and RNAi stamen Each value is the 852
mean plusmn SE (n= 4) 853
Asterisks in (E) and (F) indicate significant differences (One way ANOVA plt005 854
plt001 plt0001) between RNAi and WT 855
856
Figure 7 Silencing GhVIN1 reduced the transcript levels in -1 d stamen of 857
candidate genes for starch synthesis and degradation (A) auxin biosynthesis (B) 858
and jasmonic acid response (D) and altered the expression of some auxin 859
signaling genes (C) 860
Data represent mean values plusmn SE (n ge 6) generated from the same biological 861
replicates as in Figure 6E Asterisks indicate significant differences (one-way 862
ANOVA plt005 plt001 plt0001) between RNAi and WT 863
864
Figure 8 TUNEL-positive PCD signals detected in 3-d un-developed cotton seeds 865
of GhVINs-RNAi line 15-4-2 and the RNAi 15-4-2 times WT hybrid 866
Florescent TUNEL assay was conducted on longitudinal sections of 3 d WT seed 867
treated with DNase I as a technique positive control (A-B) WT seed (C-D) and WT 868
ovule with flower bud emasculated at -1 d as biological positive control (E-F) 869
GhVINs-RNAi 15-4-2 seed (G-H) and RNAi 15-4-2 times WT hybrid seed (I-J) 870
Note compared to the green florescent TUNEL-positive signals detected in the entire 871
seeds of the positive controls in (B) and (F) the TUNEL signals in the RNAi 15-4-2 times 872
WT hybrid seed were restricted to nucellus embryo and endosperm but not in seed 873
coat and fiber cells of the RNAi sections (H and J) indicating the PCD signal in the 874
filial tissues was under maternal control 875
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218
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- 40 -
em embryo en endosperm f fiber isc inner seed coat n nucellus osc outer seed 876
coat Bar = 100μm in (A) and the scales in (B-J) are the same as that in (A) 877
878
Figure 9 GhVINs transcripts abundant in the seed coat of 3 d WT cotton seeds 879
were significantly reduced in GhVINs-RNAi seeds along with a reduction of VIN 880
activity 881
(A-D) A longitude-section of 3d seed hybridized with a sense (A) and an antisense (B) 882
RNA probes for GhVINs (C) and (D) are magnified views at the integument region in 883
(A) and (B) respectively Note strong GhVIN mRNA signals in outer seed coat and 884
fiber cells 885
(E) Significantly reduced GhVIN1 and GhVIN2 transcripts in the 3d RNAi seeds as 886
compared to that in the WT For comparison with fiberless (fl) transgenic seeds from 887
line 28-4-1 and 61-9-1 fibers on cotton seeds of WT and RNAi 15-4-2 were removed 888
(-f) to minimize the influence of GhVINs transcripts from fiber cells Data represent 889
mean plusmn SE (n ge6) 890
(F) VIN activity but not CWIN activity was significantly reduced in 3d transgenic 891
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 892
(G) Sugar assays shown significantly reduced Glc and Fru contents in 3d transgenic 893
seeds as compared to those in WT Data represent mean values plusmn SE (n ge 4) 894
f fiber isc inner seed coat osc outer seed coat Bars = 200 μm in (A-B) and 50μm 895
in (C-D) Asterisks indicate significant differences (one-way ANOVA plt005 896
plt001 plt0001) between RNAi and WT 897
898
Figure 10 Under-developed GhVINs-RNAi seeds exhibited impaired filial tissue 899
growth 900
(A-D) Toluidine blue staining of the longitudinal sections of 15 d fully-developed 901
seed from WT cotton (A) GhVINs-RNAi 61-9-1 (B) and under-developed seed 902
from RNAi 28-4-1 (C) and 61-9-1(D) Note the fully-developed seeds had 903
progressed to torpedo embryo stage with cellularized endosperms (arrows in A and B) 904
whereas the under-developed seeds remained in the globular embryo stage with 905
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
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- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
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- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
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- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 41 -
disrupted or limited endosperm cellularization (arrowheads in C and D) 906
(E-g) Compared to the 15 d WT seed (E and e) RNAi 28-4-1 (F and f) and 61-9-1(G 907
and g) under-developed seeds showed slightly bigger seed size but retarded filial 908
tissue growth 909
(H-j) Compared to the fully developed cotyledon embryo in the WT seed at 30 d 910
where endosperm was fully absorbed (H and h) the RNAi 28-4-1 (I and i) and 911
61-9-1(J and j) under-developed seeds exhibited stunted embryo growth with 912
endosperm remained 913
Figures labeled by lowercase letters show embryo (left) and endosperm (right) tissues 914
isolated from the seeds presented in the image labelled with same but uppercase 915
letters 916
Bars = 100μm in (A) and 5mm in (E and H) The scales in (B-D) are the same as that 917
in (A) and the scales in (e-g) and (h-j) are same as that in (E) and (H) respectively 918
919
Figure 11 qPCR analysis of mRNA levels of GhVIN1 and GhVIN2 (A) and genes 920
involved in trehalose metabolism (B) in 10 DAA WT and GhVIN1-RNAi cotton 921
seed coat and filial tissue 922
Seeds from one cotton boll were used as one biological replicate Note the 10-d seeds 923
from a given cotton boll in the transgenic line comprised of two populations 924
under-developed seeds and viable seeds which were visually undistinguishable with 925
eyes at 10 DAA Compared to that in WT the GhVIN1 expression were dramatically 926
reduced in some replicates of each transgenic lines (replicates a) but comparable or at 927
same order of magnitude as in the WT in others replicates (replicates b) 928
Data represent mean values plusmn SE of at least three biological samples Asterisks 929
indicate significant differences (one-way ANOVA plt005 plt001 930
plt0001) between RNAi and WT 931
932
933
934
935
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 42 -
Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Supplemental files 936
937
Supplemental Table 1 Quantitative real-time PCR primers used in this study 938
939
Figure S1 GhVIN1-RNAi cotton plants showed reduced viable seeds at T2 940
generation in comparison with that in WT 941
Data is presented in box plots where the horizontal line within the box represents the 942
median while the top and bottom lines of the box represent viable seed number in 943
75 and 25 of the boll population respectively The extent of the vertical line 944
indicates the maximum and minimum of the data The boll numbers used in the 945
survey harvested from at least 6 individual plants of each line are indicated above the 946
box plots Asterisks indicate significant differences between WT and RNAi 947
(one-way ANOVA plt005 plt001 plt0001) 948
949
Figure S2 GhVIN1-RNAi cotton plants displayed ovule number per boll 950
identical to that in WT 951
Data were presented in box plots as explained in Figure S1 Ovules were counted 952
from cotton bolls harvested from 8 T3 individuals of each line at ~3 months after 953
germination from two independent trials The number of cotton bolls used in each line 954
was listed above each of the box plots Asterisks indicate significant differences 955
between WT and RNAi (one-way ANOVA plt005 plt001 plt0001) 956
957
Figure S3 Suppression of GhVIN1 affected floral organs formation 958
(A-B) WT -1d bud surrounded by three bracts in a pyramid-like shape (A) and flower 959
on the day of anthesis with stigma encircled by stamen (B) 960
(C-F) RNAi cotton 0d flowers showed over-protrusion of stigma (red arrows in C and 961
D) or malformed stigma (E and F) and significantly fewer stamen (D) and brown 962
and indehiscent anthers (yellow arrowhead in F) 963
(G-J) Other severe defective floral structure phenotypes exhibited in the transgenic 964
lines include single (G) and double bracts (H) without any other floral organs or 965
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 43 -
bracts with a tubular leafy structure in the center (I and J) instead of male and female 966
reproductive organs The boxed tubular structure in (J) is enlarged (i) and cut open in 967
(ii) b bracts p petal sta stamen sti stigma Bars = 1cm 968
969
Figure S4 In vitro (A) and in vivo (B-E) pollen tube elongation in GhVINs-RNAi 970
and WT cotton plants 971
(A) Pollen tube length was significantly reduced after in vitro culture for 2 hrs Each 972
value is the mean plusmn SE of the numbers of pollen tubes listed after each genotype 973
collected from 8 flowers on 4 plants for each line Asterisks indicate significant 974
differences (Studentrsquos t-test plt005 plt001 plt0001) between RNAi and 975
WT 976
(B-E) Aniline blue staining detected signals of pollen grain germination in 0_d WT 977
stigma (B) and pollen tubes at the base of 1d styles in WT (C) and RNAi 15-4-2 (D) 978
and 61-9-1 (E) Bar= in (B) The scales in (C-E) are the same as that in (B) 979
980
Figure S5 The percentages of un-developed seeds (A C and E) and 981
under-developed seeds (B D and F) after hand pollination (A-B) reciprocal 982
crossing (C-D) and bud thinning (E-F) 983
C non-treated control H hand pollinated bolls T+H bud thinning and hand 984
pollination Each value is the GLMM estimated mean plusmn SE Data were collected from 985
at least 20 bolls from at least 5 individual plants for each line Different letters 986
indicate significant difference at plt005 according to GLMM 987
988
Figure S6 RDLpGUS expression in -1 d transgenic cotton floral organ (A) stamen 989
(B) and ovule (C) and transgenic seeds at 1 d (D) 2 d (E) 5 d (F) and 10 d (G and 990
H) 991
Red arrows in A and B indicate GUS signal in the filament and anther joint region 992
Yellow arrows in B show GUS in in pollen grains Also note no GUS signal was 993
detected in -1d ovules (C and blue arrow in A) Bar = 5 mm in (A) 500 μm in (B-F) 994
2 mm in (G-H) 995
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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- 44 -
Figure S7 A heat map of genes involved in aspects of sugar metabolism and 996
measured soluble sugar levels in -1 d WT and RNAi stamen 997
Data represent mean values plusmn SE (n ge 8) in sugar assay Heat map were generated 998
according to the fold changes of qPCR mean value in each RNAi line compared to 999
that in WT (n ge 6) data were generated use the same biological replicates as in Figure 1000
6E Asterisks and red underlines indicate significant differences (one-way ANOVA 1001
all pairs Turky HSD plt005) between RNAi and WT AGPase ADP-glucose 1002
pyrophosphorylase AMY amylase BE starch branching enzyme DBE starch 1003
debranching enzyme FK fructose kinase GPI glucose phosphate isomerase HXK 1004
hexose kinase INV invertase MAL maltose MST monosaccharide transporter 1005
PGM Phosphoglucomutase SS starch synthase Sus sucrose synthase SUT 1006
sucrose transporter UGPase UDP-glucose pyrophosphorylase 1007
1008
Figure S8 qPCR analysis of the transcript levels of auxin biosynthesis genes 1009
GhTAR2 and GhYUC11 and auxin transportation genes GhAUX1 GhPIN2 and 1010
GhPIN3 in -1 DAA stamen from WT and RNAi plants 1011
Data represent mean values plusmn SE (n ge 6) from the same biological replicates as in 1012
Figure 6E One-way ANOVA analyses (all pairs Turky HSD) showed no significant 1013
difference between WT and each RNAi line 1014
1015
Figure S9 qPCR analysis of the transcript levels of GhVIN1 GhVIN2 GhCWIN1 1016
GhSus1 and GhSusA in -1 DAA styles from WT and RNAi plants Data represent 1017
mean values plusmn SE (n ge 3) Asterisks indicate significant differences (one-way 1018
ANOVA plt005 plt001) between RNAi and WT 1019
1020
Figure S10 Colorimetric TUNEL assay on the longitudinal and cross -sections of 1021
3d WT seed (A and C) and GhVINs-RNAi 15-4-2 seed (B and D) respectively 1022
(E) a magnified view of the boxed regions in (B) Note the golden-brown 1023
TUNEL-positive signals observed in the embryo (arrowheads) endosperm (arrows) 1024
and nucellus tissues of GhVINs-RNAi 15-4-2 seeds but their absence in the WT 1025
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 45 -
sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
- 46 -
1045
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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sections em Embryo en endosperm f fiber isc inner seed coat n nucellus osc 1026
outer seed coat Bars = 200 μm in (A-B) 50μm in (C-D) and 20μm in (E) 1027
1028
Figure S11 qPCR analyses of the expressions of GhCWIN1 GhSus1 and GhSusA 1029
in WT and RNAi 3d seeds (A) and 10d seed coat and filial tissues (B) 1030
For 10-d seeds from each RNAi line replicates a and b indicate samples with strong 1031
and weak GhVIN1 suppression respectively as shown in Figure 11 Data represents 1032
mean values plusmn SE from six biological replicates for (A) and at least three biological 1033
replicates for (B) 1034
1035
Figure S12 The expressions of genes related to auxin biosynthesis (A) and 1036
signaling response (B) were disrupted in10d WT GhVINs-RNAi seeds as 1037
compare to those in WT 1038
For each RNAi line replicates a and b indicate samples with strong and weak GhVIN1 1039
suppression respectively as shown in Figure 11 1040
Data represent mean values plusmn SE of at least three biological samples Asterisks 1041
indicate significant differences (one-way ANOVA plt005 plt001 1042
plt0001) between RNAi and WT 1043
1044
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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1045
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Copyright (c) 2020 American Society of Plant Biologists All rights reserved
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Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330
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Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328
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Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525
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Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260
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Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554
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Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK
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Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243
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Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889
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Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849
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Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385
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Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964
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Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13
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Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916
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Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138
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Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330
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Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328
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Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525
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Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260
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Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554
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Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK
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Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243
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Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849
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Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385
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Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13
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Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12
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Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916
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Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493
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Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138
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Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278
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required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
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Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
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Chen LQ Lin IW Qu XQ Sosso D McFarlane HE Londontildeo A Samuels AL and Frommer WB (2015) A cascade ofsequentially expressed sucrose transporters in the seed coat and endosperm provides nutrition for the Arabidopsis embryo PlantCell 27 607-619
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Datta R Chamusco KC and Chourey PS (2002) Starch biosynthesis during pollen maturation is associated with alteredpatterns of gene expression in maize Plant Physiol 130 1645-1656
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Davies C and Robinson SP (1996) Cloning of two putative vacuolar invertase cDNAs and their expression in grapevine tissuesPlant Physiol 111 275-283
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Engelke T Hirsche J and Roitsch T (2010) Anther-specific carbohydrate supply and restoration of metabolically engineeredmale sterility J Exp Bot 61 2693-2706
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Feng X L Ni W M Elge S Mueller-Roeber B Xu Z Hand Xue H W (2006) Auxin flow in anther filaments is critical for pollengrain development through regulating pollen mitosis Plant Mol Biol 61 215-226
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
French SR Abu-Zaitoon Y Uddin M Bennett K and Nonhebel HM (2014) Auxin and cell wall invertase related signalingduring rice grain development Plants 3 95-112
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Garcia D Saingery V Chambrier P Mayer U Juumlrgens G and Berger F (2003) Arabidopsis haiku mutants reveal new controlsof seed size by endosperm Plant Physiol 131 1661-1670
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Goetz M Godt DE Guivarch A Kahmann U Chriqui D and Roitsch T (2001) Induction of male sterility in plants bymetabolic engineering of the carbohydrate supply Proc Natl Acad Sci U S A 98 6522-6527
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Gmez LD Baud S and Graham IA (2005) The role of trehalose-6-phosphate synthase in Arabidopsis embryo developmentBiochem Soc Trans 33 280-282
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Guan XY Lee J J Pang MX Shi X L Stelly D M and Chen Z J (2011) Activation of Arabidopsis seed hair development bycotton fiber-related genes PLoS ONE 6 e213101
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Hamann T Bennett M Mansfield J and Somerville C (2009) Identification of cell-wall stress as a hexose-dependent andosmosensitive regulator of plant responses Plant J 57 1015-1026
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Haughn G and Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis Trends Plant Sci 10 472-477Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Hellemans J Mortier G De Paepe A Speleman F and Vandesompele J (2007) qBase relative quantification framework andsoftware for management and automated analysis of real-time quantitative PCR data Genome Biol 8 R19
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Heslop-Harrison J and Heslop-Harrison Y (1970) Evaluation of pollen viability by enzymatically induced fluorescenceIntracellular hydrolysisof fluorescein diacetate Stain Technol 45115-120
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Hirose T Takano M and Terao T (2002) Cell wall invertase in developing rice caryopsis molecular cloning of OsCIN1 andanalysis of its expression in relation to its role in grain filling Plant Cell Physiol 43 452-459
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ishiguro S Kawai-Oda A Ueda K Nishida I and Okada K (2001) The DEFECTIVE IN ANTHER DEHISCENCE1 gene encodes anovel phospholipase A1 catalyzing the initial step of jasmonic acid biosynthesis which synchronizes pollen maturation antherdehiscence and flower opening in Arabidopsis Plant Cell 13 2191-2209
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ji XM Dong B Shiran B Talbot MT Edlington JE Hughes T White RG Gubler F and Dolferus R (2011) Control ofabscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals PlantPhysiol 156 647-662
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Jin Y Ni DA and Ruan YL (2009) Posttranslational elevation of cell wall invertase activity by silencing its inhibitor in tomatodelays leaf senescence and increases seed weight and fruit hexose level Plant Cell 21 2072-2089
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Jinks RL Willoughby I and Baker C (2006) Direct seeding of ash (Fraxinus excelsior L) and sycamore (Acer pseudoplatanusL) the effects of sowing date pre-emergent herbicides cultivation and protection on seedling emergence and survival ForestEcol Manag 237 373-386
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Kakani VG Prasad PVV Craufurd PQ and Wheeler TR (2002) Response of in vitro pollen germination and pollen tubegrowth of groundnut (Arachis hypogaea L) genotypes to temperature Plant Cell Environ 25 1651-1661
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Keijzer CJ (1987) The cytology of anther dehiscence and pollen dispersal I The opening mechanism of longitudinally dehiscinganthers New Phytol 105 487-498
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Koch K (2004) Sucrose metabolism regulatory mechanisms and pivotal roles in sugar sensing and plant development CurrOpin Plant Biol 7 235-246
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Koonjul PK Minhas JS Nunes C Sheoran IS and Saini HS (2005) Selective transcriptional down-regulation of antherinvertases precedes the failure of pollen development in water-stressed wheat J Exp Bot 56179-190
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
LeClere S Schmelz EA and Chourey PS (2010) Sugar levels regulate tryptophan-dependent auxin biosynthesis in developingmaize kernels Plant Physiol 153 306-318
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Li Z Palmer WM Martin AP Wang R Rainsford F Jin Y Patrick JW Yang Y and Ruan YL (2012) High invertase activityin tomato reproductive organs correlates with enhanced sucrose import into and heat tolerance of young fruit J Exp Bot 631155-1166
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Locascio A Roig-Villanova I Bernardi Jand Varotto S (2014) Current perspectives on the hormonal control of seeddevelopment in Arabidopsis and maize a focus on auxin Front Plant Sci 5 412
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Lunn JE Delorge I Figueroa CM Van Dijck P Stitt M (2014) Trehalose metabolism in plants Plant J 79544-567Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Maddison AL Hedley PE Meyer RC Aziz N Davidson D and Machray GC (1999) Expression of tandem invertase genesassociated with sexual and vegetative growth cycles in potato Plant Mol Biol 41 741-751
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Marmey P Jalloul A Alhamdia M Assigbetse K Cacas JL Voloudakis AE Champion A Clerivet A Montillet JL andNicole M (2007) The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutumto Xanthomonas campestris pv malvacearum Plant Physiol Bioch 45 596-606
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Martin ML Lechner L Zabaleta EJ and Salerno GL (2013) A mitochondrial alkalineneutral invertase isoform (AN-InvC)functions in developmental energy-demanding processes in Arabidopsis Planta 237 813-822
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Millaacuten-Cantildeongo C Orona-Tamayo D and Heil M (2014) Phloem sugar flux and jasmonic acid-responsive cell wall invertasecontrol extrafloral nectar secretion in Ricinus communis J Chem Ecol 40 760-769
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Min L Li Y Hu Q Zhu L Gao W Wu Y Ding Y Liu S Yang X and Zhang X (2014) Sugar and auxin signaling pathwaysrespond to high-temperature stress during anther development as revealed by transcript profiling analysis in cotton PlantPhysiol 164 1293-1308
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Mishra BS Singh M Aggrawal P and Laxmi A (2009) Glucose and auxin signaling interaction in controlling Arabidopsisthaliana seedlings root growth and development Plos One 4 e4502
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Nashilevitz S Melamed-Bessudo C Aharoni A Kossmann J Wolf S and Levy AA (2009) The legwd mutant uncovers the roleof starch phosphorylation in pollen development and germination in tomato Plant J 57 1-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Nuccio ML Wu J Mowers R Zhou HP Meghji M Primavesi LF Paul MJ Chen X Gao Y Haque E Basu SSLagrimini LM (2015) Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and droughtconditions Nat Biotechnol 33 862-869
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
O Hara LE Paul MJ and Wingler A (2013) How do sugars regulate plant growth and development New insight into the roleof trehalose-6-phosphate Mol Plant 6 261-274
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12
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Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916
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Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493
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Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138
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Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278
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Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441
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Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374
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Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696
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Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
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Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787
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Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163
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Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334
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Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
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Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218
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httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Haughn G and Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis Trends Plant Sci 10 472-477Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Hellemans J Mortier G De Paepe A Speleman F and Vandesompele J (2007) qBase relative quantification framework andsoftware for management and automated analysis of real-time quantitative PCR data Genome Biol 8 R19
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Heslop-Harrison J and Heslop-Harrison Y (1970) Evaluation of pollen viability by enzymatically induced fluorescenceIntracellular hydrolysisof fluorescein diacetate Stain Technol 45115-120
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Hirose T Takano M and Terao T (2002) Cell wall invertase in developing rice caryopsis molecular cloning of OsCIN1 andanalysis of its expression in relation to its role in grain filling Plant Cell Physiol 43 452-459
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ishiguro S Kawai-Oda A Ueda K Nishida I and Okada K (2001) The DEFECTIVE IN ANTHER DEHISCENCE1 gene encodes anovel phospholipase A1 catalyzing the initial step of jasmonic acid biosynthesis which synchronizes pollen maturation antherdehiscence and flower opening in Arabidopsis Plant Cell 13 2191-2209
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ji XM Dong B Shiran B Talbot MT Edlington JE Hughes T White RG Gubler F and Dolferus R (2011) Control ofabscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals PlantPhysiol 156 647-662
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Jin Y Ni DA and Ruan YL (2009) Posttranslational elevation of cell wall invertase activity by silencing its inhibitor in tomatodelays leaf senescence and increases seed weight and fruit hexose level Plant Cell 21 2072-2089
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Jinks RL Willoughby I and Baker C (2006) Direct seeding of ash (Fraxinus excelsior L) and sycamore (Acer pseudoplatanusL) the effects of sowing date pre-emergent herbicides cultivation and protection on seedling emergence and survival ForestEcol Manag 237 373-386
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Kakani VG Prasad PVV Craufurd PQ and Wheeler TR (2002) Response of in vitro pollen germination and pollen tubegrowth of groundnut (Arachis hypogaea L) genotypes to temperature Plant Cell Environ 25 1651-1661
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Keijzer CJ (1987) The cytology of anther dehiscence and pollen dispersal I The opening mechanism of longitudinally dehiscinganthers New Phytol 105 487-498
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Koch K (2004) Sucrose metabolism regulatory mechanisms and pivotal roles in sugar sensing and plant development CurrOpin Plant Biol 7 235-246
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Koonjul PK Minhas JS Nunes C Sheoran IS and Saini HS (2005) Selective transcriptional down-regulation of antherinvertases precedes the failure of pollen development in water-stressed wheat J Exp Bot 56179-190
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
LeClere S Schmelz EA and Chourey PS (2010) Sugar levels regulate tryptophan-dependent auxin biosynthesis in developingmaize kernels Plant Physiol 153 306-318
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Li Z Palmer WM Martin AP Wang R Rainsford F Jin Y Patrick JW Yang Y and Ruan YL (2012) High invertase activityin tomato reproductive organs correlates with enhanced sucrose import into and heat tolerance of young fruit J Exp Bot 631155-1166
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Locascio A Roig-Villanova I Bernardi Jand Varotto S (2014) Current perspectives on the hormonal control of seeddevelopment in Arabidopsis and maize a focus on auxin Front Plant Sci 5 412
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Lunn JE Delorge I Figueroa CM Van Dijck P Stitt M (2014) Trehalose metabolism in plants Plant J 79544-567Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Maddison AL Hedley PE Meyer RC Aziz N Davidson D and Machray GC (1999) Expression of tandem invertase genesassociated with sexual and vegetative growth cycles in potato Plant Mol Biol 41 741-751
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Marmey P Jalloul A Alhamdia M Assigbetse K Cacas JL Voloudakis AE Champion A Clerivet A Montillet JL andNicole M (2007) The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutumto Xanthomonas campestris pv malvacearum Plant Physiol Bioch 45 596-606
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Martin ML Lechner L Zabaleta EJ and Salerno GL (2013) A mitochondrial alkalineneutral invertase isoform (AN-InvC)functions in developmental energy-demanding processes in Arabidopsis Planta 237 813-822
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Millaacuten-Cantildeongo C Orona-Tamayo D and Heil M (2014) Phloem sugar flux and jasmonic acid-responsive cell wall invertasecontrol extrafloral nectar secretion in Ricinus communis J Chem Ecol 40 760-769
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Min L Li Y Hu Q Zhu L Gao W Wu Y Ding Y Liu S Yang X and Zhang X (2014) Sugar and auxin signaling pathwaysrespond to high-temperature stress during anther development as revealed by transcript profiling analysis in cotton PlantPhysiol 164 1293-1308
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Mishra BS Singh M Aggrawal P and Laxmi A (2009) Glucose and auxin signaling interaction in controlling Arabidopsisthaliana seedlings root growth and development Plos One 4 e4502
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Nashilevitz S Melamed-Bessudo C Aharoni A Kossmann J Wolf S and Levy AA (2009) The legwd mutant uncovers the roleof starch phosphorylation in pollen development and germination in tomato Plant J 57 1-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Nuccio ML Wu J Mowers R Zhou HP Meghji M Primavesi LF Paul MJ Chen X Gao Y Haque E Basu SSLagrimini LM (2015) Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and droughtconditions Nat Biotechnol 33 862-869
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
O Hara LE Paul MJ and Wingler A (2013) How do sugars regulate plant growth and development New insight into the roleof trehalose-6-phosphate Mol Plant 6 261-274
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Li Y Jiang J Du ML Li L Wang XL and Li XB (2013) A cotton gene encoding MYB-like transcription factor is specificallyexpressed in pollen and is involved in regulation of late antherpollen development Plant Cell Physiol 54 893-906
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Li Z Palmer WM Martin AP Wang R Rainsford F Jin Y Patrick JW Yang Y and Ruan YL (2012) High invertase activityin tomato reproductive organs correlates with enhanced sucrose import into and heat tolerance of young fruit J Exp Bot 631155-1166
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Locascio A Roig-Villanova I Bernardi Jand Varotto S (2014) Current perspectives on the hormonal control of seeddevelopment in Arabidopsis and maize a focus on auxin Front Plant Sci 5 412
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Lunn JE Delorge I Figueroa CM Van Dijck P Stitt M (2014) Trehalose metabolism in plants Plant J 79544-567Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Maddison AL Hedley PE Meyer RC Aziz N Davidson D and Machray GC (1999) Expression of tandem invertase genesassociated with sexual and vegetative growth cycles in potato Plant Mol Biol 41 741-751
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Marmey P Jalloul A Alhamdia M Assigbetse K Cacas JL Voloudakis AE Champion A Clerivet A Montillet JL andNicole M (2007) The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutumto Xanthomonas campestris pv malvacearum Plant Physiol Bioch 45 596-606
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Martin ML Lechner L Zabaleta EJ and Salerno GL (2013) A mitochondrial alkalineneutral invertase isoform (AN-InvC)functions in developmental energy-demanding processes in Arabidopsis Planta 237 813-822
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Millaacuten-Cantildeongo C Orona-Tamayo D and Heil M (2014) Phloem sugar flux and jasmonic acid-responsive cell wall invertasecontrol extrafloral nectar secretion in Ricinus communis J Chem Ecol 40 760-769
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Min L Li Y Hu Q Zhu L Gao W Wu Y Ding Y Liu S Yang X and Zhang X (2014) Sugar and auxin signaling pathwaysrespond to high-temperature stress during anther development as revealed by transcript profiling analysis in cotton PlantPhysiol 164 1293-1308
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Mishra BS Singh M Aggrawal P and Laxmi A (2009) Glucose and auxin signaling interaction in controlling Arabidopsisthaliana seedlings root growth and development Plos One 4 e4502
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Nashilevitz S Melamed-Bessudo C Aharoni A Kossmann J Wolf S and Levy AA (2009) The legwd mutant uncovers the roleof starch phosphorylation in pollen development and germination in tomato Plant J 57 1-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Nuccio ML Wu J Mowers R Zhou HP Meghji M Primavesi LF Paul MJ Chen X Gao Y Haque E Basu SSLagrimini LM (2015) Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and droughtconditions Nat Biotechnol 33 862-869
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
O Hara LE Paul MJ and Wingler A (2013) How do sugars regulate plant growth and development New insight into the roleof trehalose-6-phosphate Mol Plant 6 261-274
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Oliver SN Dennis ES and Dolferus R (2005) ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice Plant Cell Physiol 48 1319-1330
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Osorio S Ruan YL and Fernie A R (2014) An update on source to sink carbon partitioning in tomato Front Plant Sci 5 516Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Palmer WM Ru L Jin Y Patrick JW and Ruan YL (2015) Tomato ovary-to-fruit transition is characterized by a spatial shift ofmRNAs for cell wall invertase and its inhibitor with the encoded proteins localized to sieve elements Mol Plant 8 315-328
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Powell R D (1969) Effect of temperature on boll set and development of Gossypium hirsutum Cotton Grow Rev 46 29-36Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pozueta-Romero J Perata P and Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants Crit RevPlant Sci 18 489-525
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Pressman E Shaked R Shen S Altahan L and Firon N (2012) Variations in carbohydrate content and sucrose-metabolizingenzymes in tomato (Solanum lycopersicum L) stamen parts during pollen maturation Am J Plant Sci 3 252-260
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Proels RK Gonzaacutelez MC and Roitsch T (2006) Gibberellin-dependent induction of tomato extracellular invertase Lin7 isrequired for pollen development Func Plant Biol 33 547-554
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Quinn G P amp Keough MJ (2002) Experimental Design and Data Analysis for Biologists Cambridge University Press CambridgeUK
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Reddy KR Hodges HF McKinion JM and Wall GA (1992) Temperature effect on pima cotton growth and developmentAgron J 84237-243
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Regan SM and Moffatt BA (1990) Cytochemical analysis of pollen development in wild-type Arabidopsis and a male-sterilemutant Plant Cell 2 877-889
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Rijavec T Kovac M Kladnik A Chourey PS and Dermastia M (2009) A comparative study on the role of cytokinins incaryopsis development in the maize miniature1 seed mutant and its wild type J Integr Plant Biol 51 840-849
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan Y-L (2014) Sucrose metabolism gateway to diverse carbon use and sugar signaling Annu Rev Plant Biol 65 33-67Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Chourey PS Delmer DP and Perez-Grau L (1997) The differential expression of sucrose synthase in relation todiverse patterns of carbon partitioning in developing cotton seed Plant Physiol 115 375-385
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ and Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cellinitiation elongation and seed development Plant Cell 15 952-964
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title httpsplantphysiolorgDownloaded on December 12 2020 - Published by
Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Stadler R Truernit E Gahrtz M and Sauer N (1999) The AtSUC1 sucrose carrier may represent the osmotic driving force foranther dehiscence and pollen tube growth in Arabidopsis Plant J 19 269-278
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sundberg E and Oslashstergaard L (2009) Distinct and dynamic auxin activities during reproductive developmentCold Spring HarbPerspect Biol 1 a001628
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Xu SM Brill E Llewellyn DJ Furbank RT and Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cottonaccelerates leaf expansion reduces seed abortion and enhances fiber production Mol Plant 5 430-441
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Waller GD and AN Mamood (1991) Upland and Pima cotton as pollen donors for male sterile upland seed parents Crop Sci 31265-266
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang ET Wang JJ Zhu XD Hao W Wang LY Li Q Zhang LX and He ZH (2008) Control of rice grain-lling and yield bya gene with a potential signature of domestication Nat Genet 40 1370-1374
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L Cook A Patrick JW Chen XY and Ruan Y L (2014) Silencing the vacuolar invertase gene GhVIN1 blocks cottonfiber initiation from the ovule epidermis probably by suppressing a cohort of regulatory genes via sugar signaling Plant J 78 686-696
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
Ruan Y-L Patrick J W and Brady C J (1996) The composition of apoplastic fluid recovered from intact developing tomato fruitAustralian Journal of Plant Physiology 23 9-13
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Patrick JW Bouzayen M Osorio S and Fernie AR (2012) Molecular regulation of seed and fruit set Trends PlantSci 17 656-665
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Ruan YL Llewellyn DJ Liu Q Xu SM Wu LM Wang L and Furbank RT (2008) Expression of sucrose synthase in thedeveloping endosperm is essential for early seed development in cotton Funct Plant Biol 35 1-12
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Scott JR Spielman M and Dickinson H G (2004) Stamen structure and function Plant Cell 16 S46-S60Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sairanen I Novaacutek O Penciacutek A Ikeda Y Jones B Sandberg G and Ljung K (2012) Soluble carbohydrates regulate auxinbiosynthesis via PIF proteins in Arabidopsis Plant Cell 24 4907-4916
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Sosso D Luo D Li QB Sasse J Yang J Gendrot G Suzuki M Koch KE McCarty DR Chourey PS Rogowsky PMRoss-lbarra J Yang B and Frommer WB (2015) Seed filling in domesticated maize and rice depends on SWEET-mediatedhexose transport Nat Genet 47 1489-1493
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Snider JL Oosterhuis DM Skulman BW and Kawakami EM (2009) Heat stress-induced limitations to reproductive successin Gossypium hirsutum Physiol Plant 137 125-138
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
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Wang L Li XR Lian H Ni DA He YK Chen XY and Ruan YL (2010) Evidence that high activity of vacuolar invertase ishttpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
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Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163
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Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334
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Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834
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Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
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Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218
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httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved
required for cotton fiber and Arabidopsis root elongation through osmotic dependent and independent pathway respectivelyPlant Physiol 154 744-756
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2012) New insights into roles of cell wall invertase in early seed development revealed bycomprehensive spatial and temporal expression patterns of GhCWIN1 in cotton Plant Physiol 160 777-787
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang L and Ruan Y L (2013) Regulation of cell division and expansion by sugar and auxin signaling Frontiers in Plant Science4 163
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wang S Wang JW Yu N Li CH Luo B Gou JY Wang LJ and Chen XY (2004) Control of plant trichome development bya cotton fiber MYB gene Plant Cell 16 2323-2334
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weber H Borisjuk L and Wobus U (1996) Controlling seed development and seed size in Vicia faba a role for seed coat-associated invertases and carbohydrate state Plant J 10 823-834
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Weschke W Panitz R Gubatz S Wang Q Radchuk R Weber H and Wobus U (2003) The role of invertases and hexosetransporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development Plant J 33 395-411
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Wilson ZA Song J Taylor B and Yang C (2011) The final split the regulation of anther dehiscence J Exp Bot 62 1633-1649Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
Yang XY Li JG Pei M Gu H Chen ZL and Qu LJ (2007) Over-expression of a flower-specific transcription factor geneAtMYB24 causes aberrant anther development Plant Cell Rep 26 219-228Zanor MI Osorio S Nunes-Nesi A Carrari FLohse M Usadel B Kuumlhn C Bleiss W Giavalisco P Willmitzer L Sulpice R Zhou YH and Fernie AR (2009) RNAinterference of LIN5 in Solanum lycopersicum confirms its role in controlling Brix content uncovers the influence of sugars on thelevels of fruit hormones and demonstrates the importance of sucrose cleavage for mormal fruit development and fertility PlantPhysiol 150 1204-1218
Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title
httpsplantphysiolorgDownloaded on December 12 2020 - Published by Copyright (c) 2020 American Society of Plant Biologists All rights reserved