Common Artifacts in MRI - National Institutes of Health...2015/06/19  · Common Artifacts in MRI...

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Common Artifacts in MRI Vinai Roopchansingh Functional MRI Facility, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA June 19, 2015 Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 1 / 30

Transcript of Common Artifacts in MRI - National Institutes of Health...2015/06/19  · Common Artifacts in MRI...

Page 1: Common Artifacts in MRI - National Institutes of Health...2015/06/19  · Common Artifacts in MRI Vinai Roopchansingh Functional MRI Facility, National Institute of Mental Health,

Common Artifacts in MRI

Vinai Roopchansingh

Functional MRI Facility, National Institute of Mental Health, National Institutes of Health,

Bethesda, MD, USA

June 19, 2015

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 1 / 30

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Outline

1 Hardware artifacts, i.e. B0, B1, etc.

2 Reconstruction artifacts

3 Patient/sample artifacts

4 Misc. / grab-bag

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 2 / 30

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Outline

1 Hardware artifacts, i.e. B0, B1, etc.

2 Reconstruction artifacts

3 Patient/sample artifacts

4 Misc. / grab-bag

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 3 / 30

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Hardware imperfections

Distortions usually come from B0 or gradient issues.

Image shading/intensity problems usually come from B1 issues.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 4 / 30

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Hardware imperfections

Distortions usually come from B0 or gradient issues.

Image shading/intensity problems usually come from B1 issues.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 4 / 30

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Hardware imperfections

Distortions usually come from B0 or gradient issues.

Image shading/intensity problems usually come from B1 issues.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 4 / 30

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Distortion issues

Larmor equation ⇒

ω0 = γB0

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 5 / 30

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Distortion issues

Larmor equation ⇒

ω0 = γB0

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 5 / 30

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Distortion issues

Larmor equation ⇒

ω0 = γB0

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 5 / 30

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Geometric distortion - Extreme example

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 6 / 30

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Geometric distortion - Extreme example

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 6 / 30

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Geometric distortion - Extreme example

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 6 / 30

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More common, less extreme, distortion examples

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 7 / 30

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More common, less extreme, distortion examples

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 7 / 30

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More common, less extreme, distortion examples

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 7 / 30

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More common, less extreme, distortion examples

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 7 / 30

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More common, less extreme, distortion examples

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 7 / 30

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More common, less extreme, distortion examples

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 7 / 30

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More common, less extreme, distortion examples

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 7 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Even more subtle distortion issues

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 8 / 30

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Very exotic, very troublesome, distortion issue

Data provided by J. Sarlls

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 9 / 30

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Very exotic, very troublesome, distortion issue

Data provided by J. Sarlls

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 9 / 30

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Very exotic, very troublesome, distortion issue

Data provided by J. Sarlls

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 9 / 30

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Very exotic, very troublesome, distortion issue

Data provided by J. Sarlls

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 9 / 30

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Very exotic, very troublesome, distortion issue

Data provided by J. Sarlls

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 9 / 30

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Issues with image intensity, shading, noise

Problems with image intensity variation, noise, etc

⇒ problems along the RF chain

⇒ limitations imposed by physics (geometry, sensitivity).

e.g. RF Coils, RF amplifiers, etc.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 10 / 30

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Issues with image intensity, shading, noise

Problems with image intensity variation, noise, etc

⇒ problems along the RF chain

⇒ limitations imposed by physics (geometry, sensitivity).

e.g. RF Coils, RF amplifiers, etc.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 10 / 30

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Issues with image intensity, shading, noise

Problems with image intensity variation, noise, etc

⇒ problems along the RF chain

⇒ limitations imposed by physics (geometry, sensitivity).

e.g. RF Coils, RF amplifiers, etc.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 10 / 30

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Issues with image intensity, shading, noise

Problems with image intensity variation, noise, etc

⇒ problems along the RF chain

⇒ limitations imposed by physics (geometry, sensitivity).

e.g. RF Coils, RF amplifiers, etc.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 10 / 30

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Failing hardware - single-channel coil

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 11 / 30

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Failing hardware - single-channel coil

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 11 / 30

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Failing hardware - single-channel coil

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 11 / 30

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Failing hardware - multi-channel array coils

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 12 / 30

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Failing hardware - multi-channel array coils

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 12 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Coil Sensitivity

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 13 / 30

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Dielectric Effects / a.k.a. B1 Inhomogeneities

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 14 / 30

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Dielectric Effects / a.k.a. B1 Inhomogeneities

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 14 / 30

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Dielectric Effects / a.k.a. B1 Inhomogeneities

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 14 / 30

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Outline

1 Hardware artifacts, i.e. B0, B1, etc.

2 Reconstruction artifacts

3 Patient/sample artifacts

4 Misc. / grab-bag

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 15 / 30

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Accelerated Reconstruction artifacts

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 16 / 30

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Accelerated Reconstruction artifacts

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 16 / 30

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Accelerated Reconstruction artifacts

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 16 / 30

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Accelerated Reconstruction artifacts

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 16 / 30

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Accelerated Reconstruction artifacts

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 16 / 30

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Error combining data

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 17 / 30

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Error combining data

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 17 / 30

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Error combining data

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 17 / 30

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Outline

1 Hardware artifacts, i.e. B0, B1, etc.

2 Reconstruction artifacts

3 Patient/sample artifacts

4 Misc. / grab-bag

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 18 / 30

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Patient/sample artifacts

Probably hardest class of artifacts to deal with.

Ethical responsibility toward your patients, volunteers,

and animals.

Experimental validity - not supposed to change the

state of the thing you are measuring.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 19 / 30

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Patient/sample artifacts

Probably hardest class of artifacts to deal with.

Ethical responsibility toward your patients, volunteers,

and animals.

Experimental validity - not supposed to change the

state of the thing you are measuring.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 19 / 30

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Patient/sample artifacts

Probably hardest class of artifacts to deal with.

Ethical responsibility toward your patients, volunteers,

and animals.

Experimental validity - not supposed to change the

state of the thing you are measuring.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 19 / 30

Page 68: Common Artifacts in MRI - National Institutes of Health...2015/06/19  · Common Artifacts in MRI Vinai Roopchansingh Functional MRI Facility, National Institute of Mental Health,

Patient/sample artifacts

Probably hardest class of artifacts to deal with.

Ethical responsibility toward your patients, volunteers,

and animals.

Experimental validity - not supposed to change the

state of the thing you are measuring.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 19 / 30

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B0 uniformity

Basic premise of MRI - VERY uniform magnetic field,

distorted in a controlled fashion to provide spatial

information.

⇒ Have to revise this assumption when imaging.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 20 / 30

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B0 uniformity

Basic premise of MRI - VERY uniform magnetic field,

distorted in a controlled fashion to provide spatial

information.

⇒ Have to revise this assumption when imaging.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 20 / 30

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B0 uniformity

Basic premise of MRI - VERY uniform magnetic field,

distorted in a controlled fashion to provide spatial

information.

⇒ Have to revise this assumption when imaging.

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 20 / 30

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B0 uniformity in the human brain

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 21 / 30

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B0 uniformity in the human brain

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 21 / 30

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B0 uniformity in the human brain

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 21 / 30

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B0 uniformity in the human brain

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 21 / 30

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B0 uniformity in the human brain

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 21 / 30

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B0 uniformity in the human brain

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 21 / 30

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Different tissue types, namely fat

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 22 / 30

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Different tissue types, namely fat

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 22 / 30

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Different tissue types, namely fat

Vinai R. (FMRIF/NIMH/NIH/DHHS) MR Artifacts 2015.06.19 22 / 30

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Physiology

van Gelderen: Magnetic Resonance In Medicine (57:2), 362-368, Feb 2007.

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Physiology

van Gelderen: Magnetic Resonance In Medicine (57:2), 362-368, Feb 2007.

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Motion

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Motion

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Motion

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Motion

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Motion

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Motion

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Motion

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Outline

1 Hardware artifacts, i.e. B0, B1, etc.

2 Reconstruction artifacts

3 Patient/sample artifacts

4 Misc. / grab-bag

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EPI Nyquist Ghosting

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EPI Nyquist Ghosting

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EPI Nyquist Ghosting

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Saturation effects

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Saturation effects

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Saturation effects

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Saturation effects

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Saturation effects

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Pop-quiz

How to differentiate fat shift artifact from Nyquist ghost shift ?

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Pop-quiz

How to differentiate fat shift artifact from Nyquist ghost shift ?

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Pop-quiz

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Acknowledgments

J. Sarlls (NMRF-NINDS)

R. M. Birn (MCW/FIM-NIMH/UW)

S. Wei and S. Kippenhan (SIN-NIMH)

J. Gonzalez-Castillo (FIM-NIMH)

D. Handwerker (FIM-NIMH)

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